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At least 19 records

Materials Data on PrS by Materials Project

PrS is Halite, Rock Salt structured and crystallizes in the cubic Fm-3m space group. The structure is three-dimensional. Pr is bonded to six equivalent S atoms to form a mixture of edge and corner-sharing PrS6 octahedra. The corner-sharing octahedral tilt angles are 0°. All Pr–S bond lengths are 2.90 Å. S is bonded to six equivalent Pr atoms to form a mixture of edge and corner-sharing SPr6 octahedra. The corner-sharing octahedral tilt angles are 0°.

36 MATERIALS SCIENCE↗

Deep neural network improves the estimation of polygenic risk scores for breast cancer

Polygenic risk scores (PRS) estimate the genetic risk of an individual for a complex disease based on many genetic variants across the whole genome. Here, we compared a series of computational models for estimation of breast cancer PRS. A deep neural network (DNN) was found to outperform alternative machine learning techniques and established statistical algorithms, including BLUP, BayesA, and LDpred. In the test cohort with 50% prevalence, the Area Under the receiver operating characteristic Curve (AUC) were 67.4% for DNN, 64.2% for BLUP, 64.5% for BayesA, and 62.4% for LDpred. BLUP, BayesA, and LPpred all generated PRS that followed a normal distribution in the case population. However, the PRS generated by DNN in the case population followed a bimodal distribution composed of two normal distributions with distinctly different means. This suggests that DNN was able to separate the case population into a high-genetic-risk case subpopulation with an average PRS significantly higher than the control population and a normal-genetic-risk case subpopulation with an average PRS similar to the control population. This allowed DNN to achieve 18.8% recall at 90% precision in the test cohort with 50% prevalence, which can be extrapolated to 65.4% recall at 20% precision in a general population with 12% prevalence. Interpretation of the DNN model identified salient variants that were assigned insignificant p values by association studies, but were important for DNN prediction. These variants may be associated with the phenotype through nonlinear relationships.

59 BASIC BIOLOGICAL SCIENCES↗

Optimization and characterization of a silicon photomultiplier-based ZnS(Ag) proton recoil fast neutron detector for nuclear fuel performance monitoring at TREAT

The restart of the Transient Reactor Test Facility (TREAT) at Idaho National Laboratory and consequent refurbishment of the Fuel Motion Monitoring System (FMMS), or Hodoscope, offers the opportunity to upgrade the detector system used for neutron imaging. Silicon photomultipliers (SiPMs) are a viable option for updating the Hodoscope to yield improved fuel monitoring capability. The Hodoscope uses ZnS(Ag) proton recoil scintillators (PRS) that provide good gamma-ray suppression and discrimination. Previous work showed that the Hamamatsu S13360-6075CS SiPM offers the best neutron detection and gamma-ray discrimination capability with the ZnS PRS. This work optimizes a SiPM-based detector and develops a PRS prototype for testing. Specifically, possible overvoltages for use are determined by confirming steady operation over extended measurement times. In addition, various SiPM-circuit implementations are tested to optimize the detector according to desired properties, and ultimately a PRS prototype is developed with modifiable components for versatile testing. Measurements of the neutron detection efficiency and gamma-ray rejection efficiency of SiPM-based PRS detectors and a reference PMT-based detector are also carried out. Neutron detection efficiency ranges between 1-2%, and detected gamma-ray rejection efficiency is on the order of 10 -7 . In conclusion, use of a low-pass filter only or a low-pass filter and 50-ω shunt resistor is recommended for the SiPM-based detector, and both configurations demonstrate improved performance over the PMT-based detector.

46 - INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AN↗

Overestimated prediction using polygenic prediction derived from summary statistics

When polygenic risk score (PRS) is derived from summary statistics, independence between discovery and test sets cannot be monitored. We compared two types of PRS studies derived from raw genetic data (denoted as rPRS) and the summary statistics for IGAP (sPRS). Two variables with the high heritability in UK Biobank, hypertension, and height, are used to derive an exemplary scale effect of PRS. sPRS without APOE is derived from International Genomics of Alzheimer’s Project (IGAP), which records ΔAUC and ΔR 2 of 0.051 ± 0.013 and 0.063 ± 0.015 for Alzheimer’s Disease Sequencing Project (ADSP) and 0.060 and 0.086 for Accelerating Medicine Partnership - Alzheimer’s Disease (AMP-AD). On UK Biobank, rPRS performances for hypertension assuming a similar size of discovery and test sets are 0.0036 ± 0.0027 (ΔAUC) and 0.0032 ± 0.0028 (ΔR 2 ). For height, ΔR 2 is 0.029 ± 0.0037. Considering the high heritability of hypertension and height of UK Biobank and sample size of UK Biobank, sPRS results from AD databases are inflated. Independence between discovery and test sets is a well-known basic requirement for PRS studies. However, a lot of PRS studies cannot follow such requirements because of impossible direct comparisons when using summary statistics. Thus, for sPRS, potential duplications should be carefully considered within the same ethnic group.

97 MATHEMATICS AND COMPUTING↗

Physical Regime Sensitivity

Abstract This work presents a novel sensitivity approach that quantifies sensitivity to regimes of a model’s state variables rather than constitutive model parameters. This Physical Regime Sensitivity (PRS) determines which regimes of a model’s independent variables have the biggest influence on an experiment or application. PRS analysis is demonstrated on a strength model used in the simulation of a copper Taylor cylinder. In a series of simulations, the strength model was perturbed sequentially in local regimes of plastic strain, plastic strain rate, temperature and pressure, and then the prediction of cylinder shape was compared to unperturbed calculations. Results show, for example, that the deformed length of the cylinder was most sensitive to strength at a strain rate of 1.0 × 10 4 /sec., but the deformed footprint radius was most sensitive to strength at a strain rate of about 4.0 × 10 4 /sec. Compared to current histogram approaches, PRS can be used to design or interpret integrated experiments by identifying not just which regimes are accessed somewhere in the experiment but the causality question of which regimes actually affect the measured data. PRS should allow one to focus experimental and modeling efforts where they are most needed and to better interpret experiments.

36 MATERIALS SCIENCE↗

Microbial Reduction of Manganese Oxides From AMD Solids for the Biomining of Critical Minerals / Rare Earth Elements

Abandoned Coal-Mine Drainage (AMD) is a source of critical minerals (CMs) that can be biomined to increase domestic CM production for the growing tech industry while mitigating current AMD hazardous waste. Pennsylvania has ~11,000 abandoned mines, ~500 of which are currently being treated with passive remediation systems (PRS), designed to increase the pH and precipitate AMD waste onsite. Manganese (Mn) that precipitates from AMD waste can co-precipitate with CMs, and the Mn and CMs will accumulate on the PRS solids over the treatment period. This results in high Mn/CM solids that could produce a valuable leachate if resolubilized. Mn reduction and solubilization can occur through microbial driven geochemical changes such as the acidification of the environment, and it is expected that Mn resolubilization will lead to a co-resolubilization of the CMs. Investigation and stimulation of this microbial resolubilization could result in an affordable CM release process that does not require chemical additives into the environment. However the microbial mechanisms that contribute to Mn resolubilization are poorly understood. Here, we have isolated bacteria capable of resolubilizing Mn from AMD PRS. Five of the bacteria isolates have been identified as Bacillus spp. and two as Corynebacterium spp. that ferment glucose to reduce/solubilize Mn MnO2 by acidogenesis. The bacterial isolates are also capable of solubilizing Mn and CMs (Y, Zr, Sb, La, Ce, Pr, Nd, Sm, Eu, Gd, Tb, Dy, Ho, Er, Tm, Yb, and Lu) from AMD PRS precipitated solids through their production of organic acids. Determining the microbial metabolism and genes involved in the resolubilization of manganese is crucial to optimize the biomining of CMs from AMD solid precipitants. This work addresses the growing need to develop novel CM recovery methods from domestic sources.

critical minerals↗

Bacterial nitrite production oxidizes Fe(II) bioremediating acidic abandoned coal mine drainage

Passive remediation systems (PRSs) treating either acidic or neutral abandoned coal mine drainage (AMD) are colonized by bacteria that can bioremediate iron (Fe) through chemical cycling. Due to the low pH in acidic AMD, iron oxidation from soluble Fe(II) to precipitated Fe(III) is mainly directed by microbial oxidation. Less well described are biotic reactions that lead to iron remediation through abiotic secondary reactions. We describe here iron oxidation in acidic AMD that is mediated by the bacterial reduction of nitrate to nitrite followed by the geochemical oxidation of Fe(II). Within an acidic PRS, 4,560 bacteria cultured from the microbial community were screened for their ability to oxidize iron and to perform nitrate-dependent iron oxidation (NDFO). Iron oxidation in the culturable community was observed in every pond of the system, ranging from 2.1% to 11.4%, and NDFO was observed in every pond, ranging from 1.4% to 6.0% of the culturable bacteria. Five NDFO isolates were purified and identified as Paraburkholderia spp. One of our isolates, Paraburkholderia sp. AV18 was shown to drive NDFO through the bacterial production of nitrite that in turn chemically oxidizes Fe(II) (nitrate reduction-iron oxidation; NRIO). AV18 expressed nitrate reductase, napA, concurrent to nitrite production. Burkholderiales are found by 16S rRNA gene sequencing in every pond of the PRS. The frequency of NDFO metabolism in the culturable microbial community and abundance of Burkholderiales in the PRS suggest nitrite producers contribute to the bioremediation of iron in acidic AMD and may be an unharnessed opportunity to increase iron bioremediation in acidic conditions.

(NDFO)↗

Expansion of the Fast Neutron Hodoscope at TREAT to Support Fuel Safety Experiments

In 2024 the Fuel Motion Monitoring System (FMMS), or Hodoscope, at the Transient Reactor Test Facility, is being expanded from 96 viewing channels to 192 viewing channels, effectively doubling the FMMS field of view. Here, this increase in capability will allow the FMMS to support larger scale fuel tests, encompassing height-of-core test devices, test devices with multi-pin fuel assemblies, and test devices with recirculating coolant flow. Work supporting the expansion included refurbishing 96 additional proton recoil scintillator (PRS) detectors, doubling the data acquisition system (DAS) installed architecture, improving time synchronization in the DAS, and new research to measure the PRS detector energy-dependent, fast-neutron detection efficiency. In addition, laboratory activities have produced an improved benchtop testing capability for assessing the DAS, time synchronization, and external start triggering, along with an updated capability to scan PRS detectors to develop a preliminary flat-field normalization prior to deployment to TREAT.

46 - INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AN↗

Mach Conference, 2022.

There has been considerable interest in chemical vapor infiltration (CVI) manufactured silicon carbide fiber and silicon carbide matrix (SiC/SiC) composite tubes due to their superior mechanical properties. The SiC/SiC tubes are known to remain stable even after prolonged exposure to radiation. However, there are many variables in the manufacturing of SiC/SiC composite tubes such as elastic constants of constituent SiC fiber and SiC matrix, braiding angle, porosity, and others whose values vary over a range. The intention is to identify the distribution of elastic constants of SiC/SiC tubes which would help model the performance of the novel cladding material. To do so, a sensitivity analysis will be carried out to determine the dominant variables that influence the elastic constants of SiC/SiC tubes. A chosen number of combinations of dominant variables will be sampled through the Latin hypercube sampling (LHS) method. The elastic constants of composite tube namely Young's moduli in the circumferential and longitudinal direction, Poisson's ratio, and shear modulus will be calculated at sampled points through finite element (FE) analysis. A polynomial response surface (PRS) will be built for each of the elastic constants to be used as a surrogate to FE analysis. Once the predictive accuracy of PRS is verified at the validation set of data points, the PRS will be invoked 105 times in Monte Carlo simulations (MCS). The uncertainty can be quantified by calculating the coefficient of variation (CV) based on MCS-generated data which will be presented at the conference.

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

Identification of Distribution of Elastic Constants of SiC/SiC Braided Tubes

There has been considerable interest in chemical vapor infiltration (CVI) manufactured silicon carbide fiber and silicon carbide matrix (SiCf/SiCm) composite tubes due to their superior mechanical properties. There are many parameters in the manufacturing of SiCf/SiCm composite tubes such as elastic constants of constituent SiC fiber and SiC matrix, braiding angle, porosity, and others whose values vary over a range. A sensitivity analysis will be carried out to determine the dominant parameters among the abovementioned ones. We intend to determine the variability in elastic constants of SiCf/SiCm composite tubes considering the variability in dominant parameters. A chosen number of combinations of dominant variables will be sampled through Latin hypercube sampling (LHS) method. The elastic constants of composite tube namely Young's moduli in circumferential and longitudinal direction, Poisson's ratio and shear modulus will be calculated at sampled points through finite element (FE) analysis. A polynomial response surface (PRS) will be built for each of the elastic constants to be used a surrogate to FE analysis. once the predictive accuracy of PRS is verified at the validation set of data points, the PRS will be invoked 105 times in Monte Carlo simulations (MCS). The variability can be calculated based on MCS-generated data which will be presented at the conference.

42 ENGINEERING↗

Characterization of lift force and torque in prolate ellipsoid suspensions

The paper derives correlations for lift force and fluid torques acting on stationary prolate ellipsoid suspensions of aspect ratio (AR) 2.5, 5, and 10 subjected to uniform flow. Here, Particle Resolved Simulations (PRS) are conducted on a suspension of infinite extent in two directions for Reynolds number 10≤Re≤200 and solid fractions (φ) between 0.1≤φ≤0.3.The suspension-mean lift-to-drag ratio varies between 7% to 14% at Re=10 which increases to 14%~22% at Re=200. The torque-induced tip rotational acceleration can reach 38%~85% of drag-induced translational acceleration at Re=200. Single particle lift force and torque correlations of (Fröhlich et al., 2020) are modified and adapted to predict current angular-mean lift and torque data. The resulting lift correlation captures the PRS data within an average deviation below 7%. Torque exhibits a somewhat more complex dependency at AR=10 than the assumed sinθ ∙ cosθ variation but nevertheless the correlations predict angular-mean values with mean relative deviations of 16.6% at AR=10.

42 ENGINEERING↗

Relative alignment between magnetic fields and molecular gas structure in molecular clouds

Here, we compare the structure of synthetic dust polarization with synthetic molecular line emission from radiative transfer calculations using a three-dimensional, turbulent collapsing-cloud magnetohydrodynamics simulation. The histogram of relative orientation (HRO) technique and the projected Rayleigh statistic (PRS) are considered. In our trans-Alfvénic (more strongly magnetized) simulation, there is a transition to perpendicular alignment at densities above ~4 × 10 3 cm –3 . This transition is recovered in most of our synthetic observations of optically thin molecular tracers; however, for 12 CO it does not occur and the PRS remains in parallel alignment across the whole observer space. We calculate the physical depth of the optical depth τ = 1 surface and find that for 12 CO it is largely located in front of the cloud mid-plane, suggesting that 12 CO is too optically thick and instead mainly probes low-volume density gas. In our super-Alfvénic simulation, the magnetic field becomes significantly more tangled, and all observed tracers tend towards no preference for perpendicular or parallel alignment. An observable difference in alignment between optically thin and optically thick tracers may indicate the presence of a dynamically important magnetic field, though there is some degeneracy with viewing angle. We convolve our data with a Gaussian beam and compare it with HRO results of the Vela C molecular cloud. We find good agreement between these results and our sub-Alfvénic simulations when viewed with the magnetic field in the plane of the sky (especially when sensitivity limitations are considered), though the observations are also consistent with an intermediately inclined magnetic field.

79 ASTRONOMY AND ASTROPHYSICS↗

Calibration of reactive burn and Jones-Wilkins-Lee parameters for simulations of a detonation-driven flow experiment with uncertainty quantification

Here, uncertainties in the explosive-specific parameters of the Jones-Wilkins-Lee (JWL) equation of state (EOS) are carefully considered in hydrodynamic simulations of an explosive experiment to minimize the error in the flow prediction. Experimental data of the leading shock position in the transverse direction over time serves as the prediction metric for quantifying simulation prediction error. The uncertainty quantification technique, global sensitivity analysis, is utilized to determine the JWL parameters to which the transverse shock propagation is most sensitive. A polynomial response surface (PRS) is constructed in the space of the most influential JWL parameters, and the point of minimum error between the experimental data and the PRS yields calibrated JWL parameters for the experimental flow. The simulation results following the parameter calibration show good agreement with the experimental data. It was found that two significant parameters, the heat release per unit mass of reactant Q and JWL model exponent R 1 are strongly related, which makes it difficult to identify accurate values.

36 MATERIALS SCIENCE↗

From Edge to HPC: Investigating Cross-Facility Data Streaming Architectures

In this paper, we investigate three cross-facility data streaming architectures, Direct Streaming (DTS), Proxied Streaming (PRS), and Managed Service Streaming (MSS). We examine their architectural variations in data flow paths and deployment feasibility, and detail their implementation using the Data Streaming to HPC (DS2HPC) architectural framework and the SciStream memory-to-memory streaming toolkit on the production-grade Advanced Computing Ecosystem (ACE) infrastructure at Oak Ridge Leadership Computing Facility (OLCF). We present a workflow-specific evaluation of these architectures using three synthetic workloads derived from the streaming characteristics of scientific workflows. Through simulated experiments, we measure streaming throughput, round-trip time, and overhead under work sharing, work sharing with feedback, and broadcast and gather messaging patterns commonly found in AI-HPC communication motifs. Our study shows that DTS offers a minimal-hop path, resulting in higher throughput and lower latency, whereas MSS provides greater deployment feasibility and scalability across multiple users but incurs significant overhead. PRS lies in between, offering a scalable architecture whose performance matches DTS in most cases.

George, Anjus [ORNL] (ORCID:0000000179737061)↗

WOMBAT (Windfarm Operations and Maintenance cost-Benefit Analysis Tool) WISDEM® [SWR-21-68]

The windfarm operations and maintenance cost-benefit analysis tool (WOMBAT) is software to simulate the operations and maintenance phase of either onshore or offshore windfarms. WOMBAT is a medium-fidelity tool that is designed to model turbine, cable, and substation failures at the subassembly level, but is flexible enough that individual component or asset-level modeling can also be performed. WOMBAT enables users to model technological improvements, the use of a wide range of service equipment from drone repairs and remote resets to heavy lift vessels and crawler cranes, to analyze cost trends with varying trade-offs in conjunction with energy production, availability and a growing range of metrics. This library provides a tool to simulate the operation and maintenance phase (O&M) of distributed, land-based, and offshore windfarms using a discrete event simulation framework. WOMBAT is written around the SimPy discrete event simulation framework. Additionally, this is supported using a flexible and modular object-oriented code base, which enables the modeling of arbitrarily large (or small) windfarms with as many or as few failure and maintenance tasks that can be encoded. Please note that this is still heavily under development, so you may find some functionality to be incomplete at the current moment, but rest assured the functionality is expanding. With that said, it would be greatly appreciated for issues or PRs to be submitted for any improvements at all, from fixing typos (guaranteed to be a few) to features to testing. Also available at: https://pypi.org/project/wombat/

Cooperman, Aubryn↗

Improve Performance and Cost for Steam Turbine Maintenance, Repair, and Overhaul Using Additive Manufacturing

The overall objective was to develop additive-manufacturing-enabled repair solutions for last stage bucket (LSB) and additive-manufacturing-enabled packing rings (PRs) for coal-fired steam turbines with the goal of reducing routine maintenance, repair, and overhaul (MRO) cost and improving the operating efficiency of steam turbines. GE Steam Power (GESP) and GE Gas Power (GEGP) provided technical and commercial consulting to GER with insights on steam turbine MRO design requirements, MRO duration and costs, and an overall commercialization strategy for the additive manufacturing technologies developed in the proposed effort.

20 FOSSIL-FUELED POWER PLANTS↗

Bacterial Biomining Rare Earth Elements in Abandoned Coal Mine Drainage: Solubilization and Sequestration

Bacteria can be used to biomine rare earth elements (REEs) domestically from abandoned coal-mine drainage (AMD) solids. Pennsylvania has ~11,000 abandoned mines, with ~500 AMD passive remediation systems that precipitate AMD REE rich solids onsite. In passive systems, REEs, co-precipitate with manganese (Mn), accumulating as solids that can produce a valuable leachate when resolubilized. REEs like lanthanum (La) are used in battery technology. Microbial metabolic changes that co-resolubilize Mn and REEs could result in an affordable release process that does not require chemical additives and the select sequestering of REEs like La allow for the selective purification from a mixed REE composition. Currently, the microbial mechanisms that contribute to mass REE resolubilization and selective sequestration are poorly understood. We have isolated bacteria (Bacillus mycoides JR07 and Bacillus pseudomycoides KB7) that solubilize Mn oxide, La oxide, and AMD solids by acidogenesis. We have determined that isolates JR07 and KB7 solubilize the La from AMD PRS solids by their production of organic acids. Preliminary results show methylotrophic bacterial isolate B3 can take up soluble La(III), giving an avenue to purification of La from a rich REE leachate. Determining the microbial metabolism and genes involved in the mass resolubilization of REEs and selective biomining of La(III) is crucial to optimize the biomining of AMD solids. Our work addresses the growing need to develop novel REE recovery methods from domestic sources.

microbiology↗

Summary of Thermocouple Performance in the Advanced Gas Reactor Experiment AGR-5/6/7 During Irradiation in the Advanced Test Reactor

This is a conference presentation ppt file. The following abstract is for the entire conference paper - which will later be the subject of a PRS artifact The Advanced Gas Reactor -5/6/7 (AGR-5/6/7) experiment was the fourth and final experiment in the AGR experiment series and completed irradiation in July 2020. It serves as the formal fuel qualification test for the TRISO fuels under development by the US Department of Energy. This experiment was designed to irradiate fuel particles at temperatures ranging from 800°C ? 1500°C. The high end of the range created unique challenges for thermocouple-based temperature measurements. Commercially available high-temperature platinum-rhodium thermocouples (Types S, R, and B) and tungsten-rhenium thermocouples (Type C) suffer rapid decalibration due to transmutation of the thermoelements from neutron absorption. A special low neutron cross-section thermocouple system based on molybdenum/niobium thermoelements called High Temperature Irradiation Resistant thermocouple (HTIR-TC) has been under development at INL since circa 2004. Several examples of this thermocouple type were incorporated into regions of the test operating above 1200°C. For regions in the test operating in the 1000°C ? 1200°C range, high-performance versions of Type N thermocouples recently developed at Cambridge University were installed. Standard Type N thermocouples were used in regions of the test operating below 1000°C. A total of 54 thermocouples were incorporated into the test. A report of the performance of this large heterogenous set of thermocouples over the first third of the irradiation was previously provided (ANIMMA 2019). This follow-on paper discusses results from the balance of the experiment (Feb 2019 - July 2020). Special attention is focused on potential drift of thermocouples operating in the higher temperature regions.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗