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At least 19 records

Complementary antibody lineages achieve neutralization breadth in an HIV-1 infected elite neutralizer

Broadly neutralizing antibodies (bNAbs) have remarkable breadth and potency against most HIV-1 subtypes and are able to prevent HIV-1 infection in animal models. However, bNAbs are extremely difficult to induce by vaccination. Defining the developmental pathways towards neutralization breadth can assist in the design of strategies to elicit protective bNAb responses by vaccination. Here, HIV-1 envelope glycoproteins (Env)-specific IgG + B cells were isolated at various time points post infection from an HIV-1 infected elite neutralizer to obtain monoclonal antibodies (mAbs). Multiple antibody lineages were isolated targeting distinct epitopes on Env, including the gp120-gp41 interface, CD4-binding site, silent face and V3 region. The mAbs each neutralized a diverse set of HIV-1 strains from different clades indicating that the patient’s remarkable serum breadth and potency might have been the result of a polyclonal mixture rather than a single bNAb lineage. High-resolution cryo-electron microscopy structures of the neutralizing mAbs (NAbs) in complex with an Env trimer generated from the same individual revealed that the NAbs used multiple strategies to neutralize the virus; blocking the receptor binding site, binding to HIV-1 Env N-linked glycans, and disassembly of the trimer. These results show that diverse NAbs can complement each other to achieve a broad and potent neutralizing serum response in HIV-1 infected individuals. Hence, the induction of combinations of moderately broad NAbs might be a viable vaccine strategy to protect against a wide range of circulating HIV-1 viruses.

60 APPLIED LIFE SCIENCES↗

The production of low-energy neutral oxygen beams by grazing-incidence neutralization

The Vanderbilt University neutral oxygen facility produces beams of low-energy neutral oxygen atoms by means of grazing-incidence collisions between ion beams and metal surfaces. Residual ions are reflected by applied electric fields. This method can utilize initial ion beams of either O(+) or O2(+) since a very large percentage of molecular oxygen ions are dissociated when they undergo grazing-incidence neutralization. The method of neutralization is applicable to low-energy beams and to all ions. Particular emphasis is on O and N2 beams for simulation of the low Earth orbit space environment. Since the beam is a pure O-neutral beam and since measurements of the interaction of the beam with solid surfaces are made spectroscopically, absolute reaction rates can be determined. The technique permits the beams to be used in conjunction with electron and photon irradiation for studies of synergistic effects. Comparisons of optical spectra of Kapton excited by 2.5-keV O, O(+), and O2(+) show significant differences. Optical spectra of Kapton excited by neutral oxygen beams of less than 1 keV have been recorded.

Albridge, R. G.↗

Broadening a SARS-CoV-1–neutralizing antibody for potent SARS-CoV-2 neutralization through directed evolution

The emergence of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) underscores the need for strategies to rapidly develop neutralizing monoclonal antibodies that can function as prophylactic and therapeutic agents and to help guide vaccine design. Here, we demonstrate that engineering approaches can be used to refocus an existing antibody that neutralizes one virus but not a related virus. Through a rapid affinity maturation strategy, we engineered CR3022, a SARS-CoV-1–neutralizing antibody, to bind to the receptor binding domain of SARS-CoV-2 with >1000-fold increased affinity. The engineered CR3022 neutralized SARS-CoV-2 and provided prophylactic protection from viral challenge in a small animal model of SARS-CoV-2 infection. Deep sequencing throughout the engineering process paired with crystallographic analysis of engineered CR3022 elucidated the molecular mechanisms by which the antibody can accommodate sequence differences in the epitopes between SARS-CoV-1 and SARS-CoV-2. This workflow provides a blueprint for the rapid broadening of neutralization of an antibody from one virus to closely related but resistant viruses.

Biochemistry & Molecular Biology↗

Neutral gas pressure dependence of ion–ion mutual neutralization rate constants using Landau–Zener theory coupled with trajectory simulations

In this computational study, we describe a self-consistent trajectory simulation approach to capture the effect of neutral gas pressure on ion–ion mutual neutralization (MN) reactions. The electron transfer probability estimated using Landau–Zener (LZ) transition state theory is incorporated into classical trajectory simulations to elicit predictions of MN cross sections in vacuum and rate constants at finite neutral gas pressures. Electronic structure calculations with multireference configuration interaction and large correlation consistent basis sets are used to derive inputs to the LZ theory. The key advance of our trajectory simulation approach is the inclusion of the effect of ion-neutral interactions on MN using a Langevin representation of the effect of background gas on ion transport. For H + – H – and Li + – H(D) – , our approach quantitatively agrees with measured speed-dependent cross sections for up to ~10 5 m/s. For the ion pair Ne + – Cl – , our predictions of the MN rate constant at ~1 Torr are a factor of ~2 to 3 higher than the experimentally measured value. Similarly, for Xe + – F – in the pressure range of ~20 000–80 000 Pa, our predictions of the MN rate constant are ~20% lower but are in excellent qualitative agreement with experimental data. Here, the paradigm of using trajectory simulations to self-consistently capture the effect of gas pressure on MN reactions advanced here provides avenues for the inclusion of additional nonclassical effects in future work.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

The present and future status of heavy neutral leptons

Abstract The existence of nonzero neutrino masses points to the likely existence of multiple Standard Model neutral fermions. When such states are heavy enough that they cannot be produced in oscillations, they are referred to as heavy neutral leptons (HNLs). In this white paper, we discuss the present experimental status of HNLs including colliders, beta decay, accelerators, as well as astrophysical and cosmological impacts. We discuss the importance of continuing to search for HNLs, and its potential impact on our understanding of key fundamental questions, and additionally we outline the future prospects for next-generation future experiments or upcoming accelerator run scenarios.

Abdullahi, Asli M.↗

Imager of low energy neutral atoms (ILENA) - Imaging neutrals from the magnetosphere at energies below 20 keV

We describe a new imager suitable for measurements of magnetospheric neutrals with energies from about 100 eV to about 10 keV; an energy range adequate for imaging the plasmasheet neutral atoms out to about 10 R(E). The instrument, an outgrowth of a study of atom-surface collisions in support of satellite drag calculations, separates incident photons from neutral atoms by surface scattering and conversion of the neutrals to ions. Subsequently, the ions formed on the first surface are accelerated through a light rejection section which also disperses the ions according to energy. The dispersed ion beam is then allowed to impact a second surface where a start pulse is generated to obtain ion velocity and energy/charge. The second surface is chosen to give large secondary electron emission without regard to charge state of the particles reflected from it. The data supporting the proposed ILENA design is presented in the first part of the paper.

Herrero, Federico A.↗

Neutral Atomic Beam Techniques for Diagnosis of Edge and Scrape-Off Layer Plasmas (2017-2019) [and subsequently titled] Neutral Atomic Beam Techniques for Diagnosis of Interior and Scrape-Off Layer Plasmas (2019-2022) (Final Report)

This is the Final Technical Report for the DOE Measurement Innovation grant DE-SC0017998 titled Neutral Atomic Beam Techniques for Diagnosis of Edge and Scrape-Off Layer Plasmas (2017-2019) and subsequently titled Neutral Atomic Beam Techniques for Diagnosis of Interior and Scrape-Off Layer Plasmas (2019-2022). The grant was funded by the Office of Fusion Energy Sciences (FES) for the period 1 September 2017 – 31 May 2022. Work performed through the grant has resulted in diagnostic innovations and new measurement capabilities that could improve understanding of magnetic equilibrium, edge localized modes in tokamaks, and bootstrap and Pfirsch-Schlüter currents in stellarators. We have performed simulations of a novel non-hydrogen beam-based diagnostic that would determine a local value (in the plasma) of the poloidal flux function by measuring the toroidal angle of the beam particles' velocity at a detector external to the plasma. The approach is similar to that of a Heavy Ion Beam Probe (HIBP), but would be able to operate with a smaller, more economical detection systems and, in doing so, may enable substantial extension of scenarios in which beam-based diagnostics are deployed. Key results include: Identification of the neutral and singly charged atoms that are most appropriate for use in the beam based diagnostic and the ionization cross-sections that are important for studying the plasma edge of a large device; Development of a promising geometry for operation in which the beam is injected horizontally near the torus midplane; Implementation of simulations using banana orbit trajectories of secondary beam ions to access plasma regions that are commonly in-accessible to an HIBP diagnostic, including sample volumes near the X-point of a diverted tokamak; Assessment of the ability of the diagnostic concept (originally developed under the assumption of, and reliant on, symmetry) to work in stellarators by performing simulations with both quasi-symmetric fields and non-quasi-symmetric fields; Measurement of noise levels with a prototype detector on a stellarator and exploration of techniques to minimize effects of noise on a diagnostic.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Identification of Serine-Containing Microcystins by UHPLC-MS/MS Using Thiol and Sulfoxide Derivatizations and Detection of Novel Neutral Losses

Microcystins (MCs) are hepatotoxic cyclic heptapeptides produced by cyanobacteria, and their structural diversity has led to the discovery of more than 300 congeners to date. However, with known amino acid combinations, many more MC congeners are theoretically possible, suggesting many remain unidentified. Herein, two novel serine (Ser)-containing MCs were putatively identified in a Lake Erie cyanobacterial harmful algal bloom (cyanoHAB), using high-resolution UHPLC-MS as well as thiol and sulfoxide derivatization procedures. These MCs contain an α,β-unsaturated carbonyl on methyl dehydroalanine (Mdha) residue that undergoes Michael addition to produce a thiol-derivatized MC. Derivatization reactions using various thiolation reagents were followed by MS/MS, and two Python codes were used for data analysis and structural elucidation of MCs. Two novel MCs containing Ser at position 1 (i.e., next to Mdha) were putatively identified as [Ser 1 ]MC-RR and [Ser 1 ]MC-YR. Using thiol- and sulfoxide-modified [Ser 1 ]MCs, identifications were confirmed by the observation of specific neutral losses of the oxidized thiols or sulfoxides in CID-MS/MS spectra in both positive and negative electrospray ionization (ESI) modes. These novel neutral losses are unique for MCs with Mdha and an adjacent Ser residue. In conclusion, data suggest that a gas-phase reaction occurs between oxygen from adjacent Ser residue and sulfur of the Mdha-bonded thiol or sulfoxide, which leads to the formation and detection of stable cyclic MC ions in MS/MS spectra at m/z values corresponding to the loss of oxidized thiols or oxidized sulfoxides from Ser 1 -containing MCs.

Premathilaka, Sanduni H.↗

Nitrate-To-Ammonia Electroconversion at Neutral pH on Polycrystalline Vanadium Sulfide Derived from Vanadium Disulfide

The electrochemical nitrate reduction reaction (NO3RR) offers a pathway to produce NH3 for fuel and fertilizer from waste NO3-. In this work, a polycrystalline vanadium sulfide (VSx), which is derived from solvothermally grown and annealed VS2, is shown to exhibit excellent NO3RR activity (2.3 +- 0.6 mg.cm-2 geo..h-1 @ -0.92 VRHE) and Faradaic efficiency to NH4+ (69 +- 6% at -0.69 VRHE) in buffered neutral pH electrolyte containing 0.1 M NO3-. A variety of characterization techniques are leveraged to support the VSx assignment, including X-ray photoelectron spectroscopy, near-edge X-ray absorption fine structure spectroscopy, selected area electron diffraction, and X-ray diffraction measurements. The VS2 annealing step reduces the oxide character and generates VSx, which, based on the improved NO3RR activity, results in the creation of active sites for NO3- binding. To help shed light on NO3RR on VSx, VS2 is used as a model system, and a grand-canonical density functional theory (GC-DFT) investigation of VS2 shows strong evidence that S vacancies are active sites for NO3RR, where NO3- outcompetes H+ for adsorption at the S-vacancy sites. Moreover, GC-DFT results highlight a thermodynamically favorable reaction to generate NH4+ in an aqueous electrolyte at relevant cathodic potentials. As an annealed material, VSx may contain undersaturated V sites, which show an electronic structure similar to the theoretically calculated S-vacancy site of VS2, and these sites may contribute to the observed increase in NO3RR activity and selectivity for NH4+ on VSx versus unannealed VS2. Finally, kinetic isotope effect measurements suggest that the kinetic rate-limiting step of the NO3RR on VSx is not proton-coupled, indicating it may be the first electron transfer to adsorbed NO3*.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Studying fast-ion populations using oscillations in solid-state neutral-particle analyzer signal and neutral-beam injection power

A method for determining the fast-ion population density in magnetically confined plasmas as a function of pitch-radius, (λ, R), using a solid-state neutral-particle analyzer (ssNPA) signal and neutral-beam injection (NBI) power-output data has been developed. Oscillations in the NBI power output are replicated only in the active part of the ssNPA signal, allowing this to be separated from the passive and background signals, which usually complicate data from this diagnostic. Results obtained using this method are compared with those from standard techniques using data from the Mega-Amp Spherical Tokamak Upgrade spherical tokamak.

Instruments & Instrumentation↗

Neutral–neutral synthesis of organic molecules in cometary comae

Remote and in situ observations of cometary gases have revealed the presence of a wealth of complex organic molecules, including carbon chains, alcohols, imines, and the amino acid glycine. Such chemical complexity in cometary material implies that impacts by comets could have supplied reagents for prebiotic chemistry to young planetary surfaces. However, the assumption that some of the molecules observed in cometary comae at millimetre wavelengths originate from ices stored inside the nucleus has not yet been proven. In fact, the comae of moderately-active comets reach sufficient densities within a few thousand kilometres of the nucleus for an active (solar radiation-driven) photochemistry to ensue. Here, we present results from our latest chemical-hydrodynamic models incorporating an updated reaction network, and show that the commonly-observed HC3N (cyanoacetylene) and NH2CHO (formamide) molecules can be efficiently produced in cometary comae as a result of two-body, neutral–neutral, gas-phase reactions involving well-known coma species. In the presence of a near-nucleus distributed source of CN (similar to that observed by the Rosetta spacecraft at comet 67P), we find that sufficient HC3N and NH2CHO can be synthesized to match the abundances of these molecules observed previously in Oort cloud comets. The precise coma origins of these (and other) complex organic molecules can be verified through radio interferometric mapping observations, for example using the Atacama Large Millimeter/submillimeter Array.

Comets↗

How the existence of unstable neutral media restricts the aspect ratio of cold neutral media?

ABSTRACT The ubiquity of very thin and lengthy cold neutral medium (CNM) has been reported by multiple authors in the H i community. Yet, the reason of how the CNM can be so long and lengthy is still in debate. In this paper, we recognize a new type of instability due to the attractive nature of the pressure force in the unstable phase. We provide a new estimation of the average CNM filament aspect ratio with the consideration of force balances at the phase boundary, which is roughly 5–20 in common CNM environment. We show that most of the cold filaments are less filamentary than what usually predicted via MHD turbulence theory or inferred from observations: The average length of CNM filament is roughly 1/2 of that in isothermal MHD turbulence with similar turbulence conditions. This suggests that the ‘cold filaments’ that are identified in observations might not be in pressure equilibrium or generated via other mechanisms.

79 ASTRONOMY AND ASTROPHYSICS↗

Search for Heavy Neutral Leptons in Electron-Positron and Neutral-Pion Final States with the MicroBooNE Detector

We present the first search for heavy neutral leptons (HNLs) decaying into ν e + e − or ν π 0 final states in a liquid-argon time projection chamber using data collected with the MicroBooNE detector. The data were recorded synchronously with the NuMI neutrino beam from Fermilab’s main injector corresponding to a total exposure of 7.01 × 10 20 protons on target. We set upper limits at the 90% confidence level on the mixing parameter | U μ 4 | 2 in the mass ranges 10 ≤ m HNL ≤ 150 MeV for the ν e + e − channel and 150 ≤ m HNL ≤ 245 MeV for the ν π 0 channel, assuming | U e 4 | 2 = | U τ 4 | 2 = 0 . These limits represent the most stringent constraints in the mass range 35 < m HNL < 175 MeV and the first constraints from a direct search for ν π 0 decays. Published by the American Physical Society 2024

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Neutral composition measurements by the Pioneer Venus Neutral Mass Spectrometer during orbiter re-entry

Measurements by the Pioneer Venus Orbiter Neutral Mass Spectrometer (ONMS) instrument during Orbiter re-entry have been made from 18-24 hours local solar time, above 170 km, of He, and from midnight to 4.5 hours below 200 km of He, N, O, CO, N2, and CO2. Preliminary results indicate that in the post-midnight sector He is the dominant species above 170 km, O the dominant species from 140-170 km and CO2 the dominant species below 140 km. Estimated scale height temperatures for He, O, and CO2 of about 105-120 K are similar to those observed in 1978-1980 at higher solar activity. The densities at 1 am local solar time and at 150 km are within 35% of those measured earlier. The He bulge is also similar to that observed in 1978-1980 confirming that thermosphere superrotation is still present. Comparison with the results of a Venus Thermosphere General Circulation Model suggests the nightside is not sensitive to changes in solar activity due to the isolation of the day and night thermospheres. apparently, the relatively small changes in the dayside thermosphere with solar activity have little impact on the nightside thermosphere.

Kasprzak, W. T.↗

Neutral Composition Measurements by the Pioneer Venus Neutral Mass Spectrometer During Orbiter Re-Entry

Measurements by the Pioneer Venus Orbiter Neutral Mass Spectrometer (ONMS) instrument during Orbiter re-entry have been made from 18-24 hours local solar time, above 170 km, of He, and from midnight to 4.5 hours below 200 km of He, N, O, CO, N2, and CO2. Preliminary results indicate that in the post-midnight sector He is the dominant species above 170 km, O the dominant species from 140-170 km and CO2 the dominant species below 140 km. Estimated scale height temperatures for He, O and CO2 of about 105-120 K are similar to those observed in 1978-80 at higher solar activity. The densities at 1 am local solar time and at 150 km are within 35% of those measured earlier. The He bulge is also similar to that observed in 1978-80 confirming that thermosphere superrotation is still present. Comparison with the results of a Venus Thermosphere General Circulation Model suggests the nightside is not sensitive to changes in solar activity due to the isolation of the day and night thermospheres. Apparently, the relatively small changes in the dayside thermosphere with solar activity have little impact on the nightside thermosphere.

Kasprzak, W. T.↗

A Search for Heavy Neutral Leptons Decaying to Electron-Positron Pairs and Neutral Pions in the MicroBooNE Detector

This thesis presents a search for heavy neutral leptons (HNLs) decaying inside the MicroBooNE detector. The MicroBooNE detector is a liquid-argon time projection chamber located at Fermilab that receives flux from two neutrino beams; the booster neutrino beam (BNB) and the neutrinos at the main injector (NuMI) beam. The search uses data taken when the NuMI beam was on, with a total exposure of $7.01\times10^{20}$ protons on target. HNLs would be produced in kaon decays, and the source of HNLs targeted in this search is kaons decaying at rest in the NuMI hadron absorber. The kinematics of the HNLs produced in this way allow their decays to be distinguished from the majority of beam-neutrino interactions and cosmic-ray activity that constitute the background. Two HNL decay channels are studied, $\nu$\ee and \vpi. Boosted decision trees (BDTs) are trained to separate the simulated HNL decays from the expected background events. The BDT score distributions are used to calculate upper limits on the mixing angle \umusq in the mass range $10\le m_{\rm HNL}\le 245$~MeV. This is the first direct search for HNL decays to the \vpi channel, and the limits provide the most stringent constraints on \umusq in the mass range $35<\mhnl<175$~MeV.

43 PARTICLE ACCELERATORS↗

Low-temperature formation of pyridine and (iso)quinoline via neutral–neutral reactions

Aromatic molecules represent fundamental building blocks in prebiotic chemistry and are contemplated as vital precursors to DNA and RNA nitrogen bases. However, despite the identification of some 300 molecules in extraterrestrial environments, the pathways to pyridine (C 5 H 5 N), pyridinyl (C 5 H 4 N•), and (iso)quinoline (C 9 H 7 N) – the simplest represen-tative of mono and bicyclic aromatic molecule carrying nitrogen – are elusive. Here, we afford compelling evidence on the gas-phase formation of methylene amidogen (H 2 CN•) and cyanomethyl (H 2 CCN•) radicals via molecular beam studies and electronic structure calcula-tions. The modeling of the chemistries of Taurus Molecular Cloud (TMC-1) and Titan’s atmosphere contemplates a complex chain of reactions synthesizing pyridine, pyridinyl, and (iso)quinoline from H 2 CN• and H 2 CCN• at levels of up to 75%. Furthermore, this study affords unique entry points to precursors of DNA and RNA nitrogen bases in hydrocarbon-rich extraterrestrial environments thus changing the way we think about the origin of prebiotic molecules in our Galaxy.

79 ASTRONOMY AND ASTROPHYSICS↗