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At least 19 records

Individual Nest Site Preferences Do Not Explain Upslope Population Shifts of a Secondary Cavity-Nesting Species

Geographic ranges of plants and animals are shifting due to environmental change. While some species are shifting towards the poles and upslope in elevation, the processes leading to these patterns are not well known. We analyzed 22 years of western bluebird (Sialia mexicana) data from a large nest box network in northern New Mexico at elevations between 1860 m and 2750 m. This population has shifted to higher elevations over time, but whether this is due to changes in nesting behavior and preference for higher elevation within the population or driven by immigration is unclear. We banded adults and nestlings from nest boxes and examined nesting location and elevation for individual birds captured two or more times. Most recaptured birds nested at the same nest boxes in subsequent years, and the number of birds that moved upslope did not significantly differ from the number that moved downslope. Fledglings moved greater distances and elevations than adults, but these movements were not upslope specific. Female fledglings showed greater changes in elevation and distance compared to male fledglings, but again, movements were not consistently upslope. The upslope shift in this population may be due to birds immigrating into the population and not from changes in individual nesting behavior.

59 BASIC BIOLOGICAL SCIENCES↗

Single reader between-cases AUC estimator with nested data

The area under the receiver operating characteristic curve (AUC) is widely used in evaluating diagnostic performance for many clinical tasks. It is still challenging to evaluate the reading performance of distinguishing between positive and negative regions of interest (ROIs) in the nested-data problem, where multiple ROIs are nested within the cases. To address this issue, we identify two kinds of AUC estimators, within-cases AUC and between-cases AUC. We focus on the between-cases AUC estimator, since our main research interest is in patient-level diagnostic performance rather than location-level performance (the ability to separate ROIs with and without disease within each patient). Another reason is that as the case number increases, the number of between-cases paired ROIs is much larger than the number of within-cases ROIs. We provide estimators for the variance of the between-cases AUC and for the covariance when there are two readers. We derive and prove the above estimators’ theoretical values based on a simulation model and characterize their behavior using Monte Carlo simulation results. We also provide a real-data example. Moreover, we connect the distribution-based simulation model with the simulation model based on the linear mixed-effect model, which helps better understand the sources of variation in the simulated dataset.

Health Care Sciences & Services↗

Leaf-cutting ant (Atta cephalotes) nests may be hotspots of methane and carbon dioxide emissions in tropical forests

Leaf-cutting ants of the genus Atta are widely distributed throughout the American tropics and subtropics and rival other herbivores in the consumption of surrounding foliage. Although numerous studies have been conducted on the role these insects play in herbivory and organic matter dynamics, only a handful of studies have examined their impacts on soil greenhouse gas emissions. Our study investigated fluxes of carbon dioxide (CO 2 ) and methane (CH 4 ) from three nests of Atta cephalotes using a portable greenhouse gas analyzer, and measured CO 2 and CH 4 emissions from soils containing nest holes that ranged 5.2–152.1 g CO 2 -C and –1.1 to 15,264.7 mg CH 4 -C m -2 day -1 , respectively. Fluxes of CO 2 and CH 4 were positively correlated above nest holes, but not in patches of soil away from leaf-cutting ant nests. Nearby non-nest soil emissions were significantly lower, ranging from 0.6 to 6.0 g CO 2 -C and –1.3 to 0.77 mg CH 4 -C m -2 day -1 . Fluxes of both gases among nests and among holes within a single nest were highly variable. This preliminary dataset is small in scale both temporarily and geographically, but the discovery of substantial greenhouse gas fluxes from Atta cephalotes nests may have important implications for carbon budgets of tropical and subtropical American forests. Further work will be necessary to determine the mechanisms behind enhanced greenhouse gas emissions from leaf-cutting ant nests, and how this may alter ecosystem-scale CO 2 emissions and CH 4 sink strength in tropical forest soils.

54 ENVIRONMENTAL SCIENCES↗

Hanford Site Raptor Nest Monitoring Report for Calendar Years 2024 and 2025

The focus of this report is to document the distribution and abundance of nesting raptors on the HFO-managed portion of the Hanford Site. Raptor nest surveys provide land managers with specific locations of nest sites so that the nests can be avoided and disturbances minimized during the nesting season. Long-term trends in nesting raptor populations also allow for the assessment of potential impacts from Hanford Site operations.

63 RADIATION, THERMAL, AND OTHER ENVIRON. POLLUTAN↗

Hanford Site Bee Nest Box Monitoring Report for Calendar Year 2021

This report summarizes the results of the third year of monitoring bee nest boxes on the Hanford Site. Twenty bee nest boxes were installed as a component of compensatory mitigation for the installation of the L-894 water line between the 200-East and 200-West Areas of the Hanford Site in July 2019. The goal of this compensatory mitigation is to replace lost nesting habitat for above-ground nesting bees in a mature sagebrush ecosystem. Annual monitoring will track the condition and occupation of the bee nest boxes to determine if the compensatory mitigation was successful and to identify best practices when replacing nesting habitat for native bees.

54 ENVIRONMENTAL SCIENCES↗

Hanford Site Bee Nest Box Monitoring Report for Calendar Year 2020

This report summarizes the results of the second year of monitoring bee nest boxes on the Hanford Site. Twenty bee nest boxes were installed as a component of compensatory mitigation for the installation of the L-894 water line between the 200-East and 200-West Areas of the Hanford Site in July 2019. The goal of this compensatory mitigation is to replace lost nesting habitat for above-ground nesting bees in a mature sagebrush ecosystem. Annual monitoring will track the condition and occupation of the bee nest boxes to determine if the compensatory mitigation was successful and to identify best practices when replacing nesting habitat for native bees.

54 ENVIRONMENTAL SCIENCES↗

Block-structured, equal-workload, multi-grid-nesting interface for the Boussinesq wave model FUNWAVE-TVD (Total Variation Diminishing)

Abstract. We describe the development of a block-structured, equal-CPU-load (central processing unit), multi-grid-nesting interface for the Boussinesq wave model FUNWAVE-TVD (Fully Nonlinear Boussinesq Wave Model with Total Variation Diminishing Solver). The new model framework does not interfere with the core solver, and thus the core program, FUNWAVE-TVD, is still a standalone model used for a single grid. The nesting interface manages the time sequencing and two-way nesting processes between the parent grid and child grid with grid refinement in a hierarchical manner. Workload balance in the MPI-based (message passing interface) parallelization is handled by an equal-load scheme. A strategy of shared array allocation is applied for data management that allows for a large number of nested grids without creating additional memory allocations. Four model tests are conducted to verify the nesting algorithm with assessments of model accuracy and the robustness in the application in modeling transoceanic tsunamis and coastal effects.

Choi, Young-Kwang↗

Breeding latitude is associated with the timing of nesting and migration around the annual calendar among Purple Martin (Progne subis) populations

Timing is critical for species that migrate seasonally, as timing mismatches can lead to reduced reproductive success and population declines. We investigated the effect of breeding latitude on the migration timing of a long-distance migratory songbird (Purple Martin, Progne subis subis) by using light-level geolocators deployed across breeding sites between 26° and 53° latitude (n = 329). We used nesting data (1st egg dates; n=28,165) to explore latitudinal patterns in the timing of breeding. Using generalized linear mixed models (GLMMs) we found that breeding latitude was highly associated with timing around the calendar, explaining population-level timing across both spring and fall migration. Populations breeding at more northern latitudes migrated later in fall (mean days/degree latitude =2), in spring (mean days/degree latitude =3), and nested later (days/degree latitude = 3) than populations breeding at more southern latitudes. Generalized additive mixed models (GAMMs) revealed significant non-linearity between breeding latitude and spring and fall migration timing, and the timing of nesting. In spring, the most northern breeders (> 40 degrees N) were more synchronous in their timing, departing their nonbreeding sites and arriving earlier at their breeding sites relative to their breeding latitude. These most northern breeders also had similar nest timing and fall migration departure timing. Breeding latitude was also associated with seasonal partitioning of migratory and sedentary periods. The most northern breeders spent 10% more time on fall migration, 2% more at wintering grounds, 1% more on spring migration, and 13% less time at their breeding sites. Our results support the notion that selection for timing at breeding latitudes can have year-round effects on the timing of seasonal events in long-distance migratory songbirds. Future studies should examine whether these timing patterns associated with latitude limit phenotypic responses to climate change.

54 ENVIRONMENTAL SCIENCES↗

Efficient and generalizable nested Fourier-DeepONet for three-dimensional geological carbon sequestration

Geological carbon sequestration (GCS) involves injecting CO2 into subsurface geological formationsfor permanent storage. Numerical simulations could guide decisions in GCS projects by predictingCO 2 migration pathways and the pressure distribution in storage formation. However, these simula-tions are often computationally expensive due to highly coupled physics and large spatial-temporalsimulation domains. Surrogate modelling with data-driven machine learning has become a promis-ing alternative to accelerate physics-based simulations. Among these, the Fourier neural operator(FNO) has been applied to three-dimensional synthetic subsurface models. Despite its good accuracyin simulating CO 2 plume migration, it requires large computational resources in training and alsolacks generalizability. Here, to further improve performance, we have developed a nested Fourier-DeepONet by combining the expressiveness of the FNO with the modularity of a deep operatornetwork (DeepONet). This new framework is twice as efficient as a nested FNO for training and has atleast 80% lower GPU memory requirement due to its flexibility to treat temporal coordinates sepa-rately. These performance improvements are achieved without compromising prediction accuracy.In addition, the generalization and extrapolation ability of nested Fourier-DeepONet beyond thetraining range has been thoroughly evaluated. Nested Fourier-DeepONet outperformed the nestedFNO for extrapolation in time with more than 50% reduced error. It also exhibited good extrapolationaccuracy beyond the training range in terms of reservoir properties, number of wells, and injectionrate.

Lee, Jonathan E. [Department of Chemical and Envir↗

Fault Detection on Seismic Structural Images Using a Nested Residual U-Net

Automatic identification of faults on seismic structural images is a challenging yet crucial task in quantitative seismic interpretation. Human picking or attribute-based fault detection methods may misidentify faults on noisy, complex seismic images. In this work, we develop a new automatic fault detection method using a nested residual U-shaped convolutional neural network. Each of the encoders and decoders in this neural network is a residual U-Net, leading to a nested architecture. The final fault map results from the fusion of three fault maps with low, medium, and high fault resolutions. We demonstrate the excellent fault-detection capability of our nested neural network using a series of synthetic and field seismic images. We find that our approach produces clearer and more interpretable fault maps than the current state-of-the-art U-Net fault detection method, particularly on noisy seismic images. Our new automatic fault detection method can facilitate reliable quantitative seismic interpretation on field seismic images.

58 GEOSCIENCES↗

Nuclear Enterprise Science & Technology (NEST) [Slides]

The NEST Certificate Program is designed to provide students with the skills and experience to qualify for entry-level positions in nuclear facilities as Fissile Material Handler and/or Glovebox Operator. The program goal is to provide for a technically qualified workforce who can execute a variety of programmatic work in modern nuclear materials handling and processing facilities. The program is designed to be completed in a minimum of 1 year (2 semesters) of university level courses (30 credit hours). A certificate will be offered and awarded through the University of New Mexico – Los Alamos (UNM-LA). NEST is unique in that it is an immersive education program. The NNSA-required training for nuclear material handlers and fissionable material handlers has been cross-walked with the educational Core Curricula. Academic content will be delivered that provides background scientific and engineering understanding of the fundamental concepts behind this training. It will be offered as a Pilot Program to an incumbent cohort to ensure that the Certificate meets programmatic needs. NEST is modelled after a Wharton County Junior College (Texas) program to attract and produce nuclear reactor operators.

96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗

Unbalanced Nested Random Effects Estimation of Variance Components

To investigate the contributing factors of variance in the measurement of an iodine 127 (127I) sample, we implement a nested random effects analysis of variance (ANOVA). Historically, the reported uncertainty on a measurement of 127I has been obtained by methods of forward uncertainty propagation because there is typically only one replicate of a given sample for which to estimate the uncertainty. When samples are processed there are several types of quality control (QC) standards analyzed along-side the unknown samples with two to five replicates for each. Assuming the variance observed in these replicate QC standards is representative of that of the unknown samples, we use these data in a nested random effects ANOVA to estimate the total uncertainty of a measurement. We demonstrate this approach with two sets of measurements from Idaho National Laboratory and compare the results with the forward uncertainty propagation approach. Variance component estimates for the coarsest level of the nesting structure were most imprecise because replicates were most limited at these levels. We find that the results largely agree between forward propagation and ANOVA, and the greatest contributors of variance are due to instrument variation and chemical processing, with human processing being among the smallest contributors. This analysis provides reassurance that the reported uncertainties using forward propagation are reasonable and the process is well controlled. We propose a future designed experiment to increase replicates at the coarsest level of the hierarchy to improve estimates of these variance components.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Direct stellarator coil optimization for nested magnetic surfaces with precise quasi-symmetry

We present a robust optimization algorithm for the design of electromagnetic coils that generate vacuum magnetic fields with nested flux surfaces and precise quasi-symmetry. The method is based on a bilevel optimization problem, where the outer coil optimization is constrained by a set of inner least squares optimization problems whose solutions describe magnetic surfaces. The outer optimization objective targets coils that generate a field with nested magnetic surfaces and good quasi-symmetry. The inner optimization problems identify magnetic surfaces when they exist, and approximate surfaces in the presence of magnetic islands or chaos. We show that this formulation can be used to heal islands and chaos, thus producing coils that result in magnetic fields with precise quasi-symmetry. We show that the method can be initialized with coils from the traditional two-stage coil design process, as well as coils from a near-axis expansion optimization. We present a numerical example where island chains are healed and quasi-symmetry is optimized up to surfaces with aspect ratio 6. Another numerical example illustrates that the aspect ratio of nested flux surfaces with optimized quasi-symmetry can be decreased from 6 to approximately 4. In conclusion, the last example shows that our approach is robust and a cold-start using coils from a near-axis expansion optimization.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

A review of NEST models for liquid xenon and an exhaustive comparison with other approaches

This paper discusses the microphysical simulation of interactions in liquid xenon, the active detector medium in many leading rare-event searches for new physics, and describes experimental observables useful for understanding detector performance. The scintillation and ionization yield distributions for signal and background are presented using the Noble Element Simulation Technique (NEST), a toolkit based on experimental data and simple empirical formulas, which mimic previous microphysics modeling but are guided by data. The NEST models for light and charge production as a function of the particle type, energy, and electric field are reviewed, along with models for energy resolution and final pulse areas. NEST is compared with other models or sets of models and validated against real data, with several specific examples drawn from XENON, ZEPLIN, LUX, LZ, PandaX, and table-top experiments used for calibrations.

WIMPs↗

A Glimpse into Photodetachment Spectra of Giant and Nested Fullerene Anions

We focus on the study of the photodetachment of bare, i.e., single-cage (CN)− as well as nested (multi-cage) (CN@CM@…)− singly charged fullerene anions. We calculate the attached electron’s wavefunctions, energies, oscillator strengths and photodetachment cross sections of the C60−, C240−, C540−, (C60@C240)−, (C60@C540)−, (C240@C540)− and (C60@C240@C540)− fullerene anions, where the attached electron is captured into the ground s-state by the resultant external field provided by all fullerene cages in the anion. The goal is to gain insight into the changes in behavior ofphotodetachment of this valence electron as a function of the different geometries and potentials of the various underlying fullerenes or nested fullerenes (fullerene onions) both due to their increasing size and due to “stuffing” of a larger bare fullerene with smaller fullerenes. To meet this goal, we opt for a simple semi-empirical approximation to this problem: we approximate each individual fullerene cage by a rigid potential sphere of a certain inner radius, thickness and potential depth, as in numerous other model studies performed to date. The results reveal a number of rather significant differences in the wavefunctions, oscillator strengths and photodetachment cross sections among these fullerene anions, some of which are completely counter-intuitive. The results obtained can serve as a “zeroth-order-touchstone” for future studies of single-cage and nested fullerene anions by more rigorous theories and/or experiments to build upon this work to assess the importance of interactions omitted in the present study.

Dolmatov, Valeriy K.↗

Interaction-enhanced nesting in spin-fermion and Fermi-Hubbard models

The spin-fermion (SF) model postulates that the dominant coupling between low-energy fermions in near critical metals is mediated by collective spin fluctuations (paramagnons) peaked at the Néel wave vector, Q N , connecting hot spots on opposite sides of the Fermi surface. It has been argued that strong correlations at hot spots lead to a Fermi surface deformation (FSD) featuring flat regions and increased nesting. This conjecture was confirmed in the perturbative self-consistent calculations when the paramagnon propagator dependence on momentum deviation from Q N is given by χ − 1 ∝ | Δ q | . Using diagrammatic Monte Carlo (diagMC) technique we show that such a dependence holds only at temperatures orders of magnitude smaller than any other energy scale in the problem, indicating that a different mechanism may be at play. Instead, we find that a χ − 1 ∝ | Δ q | 2 dependence yields a robust finite- T scenario for achieving FSD. To link phenomenological and microscopic descriptions, we applied the connected determinant diagMC method to the ( t − t ′ ) Hubbard model and found that at large U / t > 5.5 before the formation of electron and hole pockets (i) the FSD defined as a maximum of the spectral function is not very pronounced; instead, it is the lines of zeros of the renormalized dispersion relation that deforms toward nesting, and (ii) the static spin susceptibility is well described by χ − 1 ∝ | Δ q | 2 . Flat FS regions yield a nontrivial scenario for realizing a non-Fermi liquid state. Published by the American Physical Society 2024

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

The effects of environmental conditions on eggshell thickness of two North American secondary cavity-nesting birds

Egg hatchability in birds is a critical component of individual reproductive success and is associated with eggshell integrity. Contaminants, such as DDT, can influence eggshell thickness and are known to cause population declines. Moisture content and temperature can also impact eggshell thickness, but the influence of environmental conditions on the natural variation in eggshell thickness in wild populations is not well understood. Our goal was to investigate the relationship between environmental conditions and eggshell thickness of Western Bluebird (Sialia mexicana) and Ash-throated Flycatcher (Myiarchus cinerascens) eggs from 1997 to 2013 on the Pajarito Plateau in northern New Mexico. We tested whether nesting elevation, temperature, precipitation, and drought conditions influenced eggshell thickness in these two secondary cavity-nesting species, while also looking at eggshell thickness over time. Over the 16 years, nonviable or abandoned eggs were collected, and the analyzed dataset included 330 bluebird eggs and 113 flycatcher eggs. There was a significant increase in eggshell thickness over time for both species. Flycatcher eggshells were correlated with higher temperatures, whereas bluebird eggshells were influenced by an interaction between temperature and drought severity. In drought conditions, bluebird eggshell thickness was positively correlated with temperature, whereas in wet conditions, eggshell thickness was negatively correlated with temperature. Thicker eggshells in drought conditions may be a way of reducing water loss from eggs, which occurs faster at higher temperatures. In the southwestern United States, frequent and severe drought, higher temperatures, and decreases in precipitation are all expected to continue. In conclusion, the structure of eggs will be important to consider regarding how species may or may not adapt to novel conditions or persist in new environments.

59 BASIC BIOLOGICAL SCIENCES↗