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DOE OSTI2024

Life-cycle analysis of offshore macroalgae production systems in the United States

Offshore macroalgae production offers the potential to provide valuable biomass for food, energy, and higher value products without the use of land or freshwater while using excess nutrients and carbon dioxide. To realize this potential, the Macroalgae Research Inspiring Novel Energy Resources program of the Advanced Research Projects Agency-Energy has initiated projects to develop advanced cultivation technologies that enable the cost- and energy-efficient production of macroalgal biomass. Here, this study addresses the life-cycle greenhouse gas emissions and energy return on investment for five U.S. offshore macroalgae production systems designed for deployment at the thousand-hectare scale using a detailed module developed within the GREET life-cycle analysis model for this study. The carbon intensity of macroalgae production system designs, expressed as kg of carbon dioxide equivalent per dry metric ton of algae harvested, vary widely from 49 to 220 and confirm that biomass productivity has the highest degree of sensitivity across the model parameters tested. Regardless of the system designs, the upstream and combustion emissions from fuel use are the key contributor (over 45 %) to carbon intensity, indicating that the use of low-carbon fuels (e.g., renewable diesel) could further reduce greenhouse gas emissions. Further studies need to specify the market opportunity and specific product slates for macroalgae to provide a complete picture of the environmental impacts of macroalgal feedstock.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2026

MacroAlgae Cultivation MODeling System (MACMODS)

PI Kristen Davis is transferring from a position at the University of California, Irvine to Stanford University, therefore this project will terminate at UC Irvine as of June 30, 2024 and will be transferred to Stanford University. This report describes progress made on the MACMODS project during the period of performance from May 2018 through June 2024.

09 BIOMASS FUELS↗

DOE OSTI2024

Nutrient Replenishment by Turbulent Mixing in Suspended Macroalgal Farms

Abstract This study uses large eddy simulations to investigate nutrient transport and uptake in suspended macroalgal farms. Various farm configurations and oceanic forcing conditions are examined, with the farm base located near the nutricline depth. We introduce the Damkohler number Da to quantify the balance between nutrient consumption by macroalgae uptake and supply by farm‐enhanced nutrient transport. Most cases exhibit low Da , indicating that farm‐generated turbulence drives sufficient upward nutrient fluxes, supporting macroalgae growth. High Da and starvation may occur in fully grown farm blocks, a configuration that generates the weakest turbulence, particularly when combined with densely planted macroalgae or weak flow conditions. Flow stagnation within the farm due to macroalgae drag may constrain the uptake efficiency and further increase the starvation risk. Mitigation strategies involve timely harvesting, avoiding dense macroalgae canopies, and selecting farm locations with robust ocean currents and waves. This study provides insights for sustainable macroalgal farm planning.

Geology↗

DOE OSTI2025

Assessment of the bioconversion potential of minimally processed seaweed by halophilic yeasts

Building an advanced economy using biomanufacturing requires robust sources of carbon for converting into chemicals and products. Macroalgae hold significant potential due to their fast growth rates, lack of freshwater usage, and lack of land usage. To be used as a common feedstock, there are two primary challenges that need to be addressed: 1) unusual chemical composition and 2) high salinity. A solution to both issues is to use a resilient, salt-loving organism with a broad consumption profile for the conversion of macroalgae. Here we evaluate the ability of the oleaginous yeast Rhodosporidium toruloides to grow in wild macroalgae-derived feedstocks and identify a conversion process that is functional for two species of Sargassum collected from the Caribbean using R. toruloides that does not require washing of the input seaweed material. Together this demonstrates a future avenue of work that minimizes freshwater usage for incorporating macroalgae as a biomanufacturing carbon source.

09 BIOMASS FUELS↗

DOE OSTI2025

A red algal polysaccharide influences the multicellular development of the choanoflagellate Salpingoeca rosetta

The choanoflagellate Salpingoeca rosetta exemplifies the capacity of marine microeukaryotes to integrate environmental cues into their life histories. Some of the cues that S. rosetta detects are lipids from their bacterial prey that induce the development of multicellular colonies called rosettes. In the aquatic environments where S. rosetta would encounter bacterial cues, microbial communities gain refuge and food from algae. For example, microbes in coastal environments benefit from macroalgae that annually release ∼10 14 g of carbon, primarily in the form of polysaccharides that comprise ∼80% of dissolved organic carbon in surface waters. Despite the ecological impact of algae and historical descriptions of choanoflagellates attached to algae, the influence of algae on choanoflagellate life history transitions has remained unexplored. Here, we report that porphyran, a polysaccharide produced by the red macroalga Porphyra umbilicalis, induces multicellular development in S. rosetta. We first noticed this response when S. rosetta formed multicellular rosette colonies while growing in media prepared from P. umbilicalis, even though rosette-inducing bacteria were absent. By biochemically purifying extracts of P. umbilicalis, we identified porphyran as the rosette-inducing factor. This response provides a biochemical insight that indicates algal polysaccharides may serve as cues to mediate associations between choanoflagellates and algae. Moreover, this observation complements evidence from environmental and geochemical studies that show the impact that algae have exerted on the ecology and evolution of eukaryotes, including a rise in algal productivity during the origin of animals, the closest living relatives of choanoflagellates.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2024

Wave-powered water pump for upwelling in aquaculture: Numerical model and ocean test

Wave-powered upwelling can increase the productivity and survivability of several aquaculture species. This enhancement is due to transporting cold, nutrient-rich ocean water, typically found lower in the water column, to the surface. Macroalgaes, like kelp, exhibit increased growth from these altered conditions. The University of New Hampshire’s (UNH) wave-powered water pump (wave pump) is a point absorber wave energy converter (WEC) that uses ocean waves to create relative motion between a spar buoy and a concentric float which drives an internal pump. A numerical model of the wave pump was developed using WEC-Sim to predict device performance in the ocean. Wave pump performance was evaluated during a five day ocean test near Appledore Island in Maine in March 2023, where volumetric flow rate, relative distance between spar and float, and wave conditions were measured. These data were then used for numerical model validation. The ocean deployment recorded the device’s performance in a variety of sea states, with average significant wave heights up to 0.7 m. The ocean test data were compared to the WEC-Sim numerical model of the device with favorable results. Average values of device stroke period, stroke height, and flow rate agreed between the ocean test and model data to within approximately 16 to 22%. Furthermore, the validated numerical model provides a valuable tool for improving the design and developing a commercial-scale, wave-powered water pump for use in aquaculture.

16 TIDAL AND WAVE POWER↗

DOE OSTI2025

Ecosystem consequences of a nitrogen-fixing proto-organelle

Microscale symbioses can be critical to ecosystem functions, but the mechanisms of these interactions in nature are often cryptic. Here, we use a combination of stable isotope imaging and tracing to reveal carbon (C) and nitrogen (N) exchanges among three symbiotic primary producers that fuel a salmon-bearing river food web. Bulk isotope analysis, nanoSIMS (secondary ion mass spectrometry) isotope imaging, and density centrifugation for quantitative stable isotope probing enabled quantification of organism-specific C- and N-fixation rates from the subcellular scale to the ecosystem. After winters with riverbed-scouring floods, the macroalga Cladophora glomerata uses nutrients in spring runoff to grow streamers up to 10 m long. During summer flow recession, riverine N concentrations wane and Cladophora becomes densely epiphytized by three species of Epithemia, diatoms with N-fixing endosymbionts (proto-organelles) descended from a free-living Crocosphaera cyanobacterium. Over summertime epiphyte succession on Cladophora, N-fixation rates increased as Epithemia spp. became dominant, Cladophora C-fixation declined to near zero, and Epithemia C-fixation increased. Carbon transfer to caddisflies grazing on Cladophora with high densities of Epithemia was 10-fold higher than C transfer to caddisflies grazing Cladophora with low Epithemia loads. In response to demand for N, Epithemia allocates high levels of newly fixed C to its endosymbiont. Consequently, these endosymbionts have the highest rates of C and N accumulation of any taxon in this tripartite symbiosis during the biologically productive season and can produce one of the highest areal rates of N-fixation reported in any river ecosystem.

Marks, Jane C. [Northern Arizona Univ., Flagstaff,↗

DOE OSTI2025

Composition, Growth, Succession, and Function in the Cladophora Microbiome: Insights From Quantitative Stable Isotope Probing and NanoSIMS Imaging

The branching green macroalga Cladophora glomerata and its epiphytic microbiome dominate summer biomass in the Eel River, a Northern California river under Mediterranean (summer drought, winter rain) seasonality. Green Cladophora streamers proliferate in early summer, then change to yellow and then red-brown as epiphyte loads increase. Here, we characterised successional changes in epiphytic bacteria on Cladophora, examining both community composition and growth rates, using quantitative Stable Isotope Probing (qSIP) and 16S rRNA gene amplicon sequencing. The number of bacterial taxa increased with succession while growth rates peaked in the middle stage. NanoSIMS imaging confirmed high sulphur (S) concentrations in Cladophora cell walls relative to surrounding biomass, coinciding with a bloom of sulphur bacteria (bacteria that reduce or oxidise sulphur/sulphates). In general, relative abundances and growth rates were independent, indicating that either metric alone is insufficient for understanding how taxonomy and functional groups affect ecosystem processes. For instance, the relative abundance of nitrogen fixers peaked in the late summer when their relative growth rates were slowest. Such patterns may be driven by space competition limiting growth. Together, changes in abundance and relative growth rates suggest different limiting factors for different functional groups in the Cladophora microbiome at multiple successional stages.

Biological and medical sciences↗

DOE OSTI2025

Scaffolded and annotated nuclear and organelle genomes of the North American brown alga Saccharina latissima

Increasing the genomic resources of emerging aquaculture crop targets can expedite breeding processes as seen in molecular breeding advances in agriculture. High quality annotated reference genomes are essential to implement this relatively new molecular breeding scheme and benefit research areas such as population genetics, gene discovery, and gene mechanics by providing a tool for standard comparison. The brown macroalga Saccharina latissima (sugar kelp) is an ecologically and economically important kelp that is found in both the northern Pacific and Atlantic Oceans. Cultivation of Saccharina latissima for human consumption has increased significantly this century in both North America and Europe, and its single blade morphology allows for dense seeding practices used in the cultivation of its Asian sister species, Saccharina japonica. While Saccharina latissima has potential as a human food crop, insufficient information from genetic resources has limited molecular breeding in sugar kelp aquaculture. We present scaffolded and annotated Saccharina latissima nuclear and organelle genomes from a female gametophyte collected from Black Ledge, Groton, Connecticut. This Saccharina latissima genome compares well with other published kelp genomes and contains 218 scaffolds with a scaffold N50 of 1.35 Mb, a GC content of 49.84%, and 25,012 predicted genes. We also validated this genome by comparing the synteny and completeness of this Saccharina latissima genome to other kelp genomes. Our team has successfully performed initial genomic selection trials with sugar kelp using a draft version of this genome. This Saccharina latissima genome expands the genetic toolkit for the economically and ecologically important sugar kelp and will be a fundamental resource for future foundational science, breeding, and conservation efforts.

DeWeese, Kelly↗

DOE OSTI2024

Environmental DNA Detection in Marine Macrophyte Ecosystems as a Potential Blue Carbon Source in Sediments

“Blue carbon” refers to the carbon sequestered by the world’s oceanic and coastal ecosystems, particularly through coastal vegetation such as mangroves, salt marshes, seagrasses, and marine macroalgae. These ecosystems play a crucial role in the global carbon cycle by serving as significant carbon sinks, absorbing carbon dioxide from the atmosphere and storing it in biomass and sediments over long periods. This study explores the use of environmental DNA (eDNA) to detect marine macrophytes and microalgae assemblages contributing to blue carbon in sediments across various coastal ecosystems. The research addresses the challenges of traditional monitoring methods by utilizing high-throughput sequencing of the 18S-V9 region amplified using eDNA from sediment samples collected at eight locations in the United States and South Korea. The results reveal a diverse array of taxa, underscoring the variability in community composition across different conditions. Notably, sites with seagrass beds and Ulva blooms showed distinct patterns in microalgal community structure. This study underscores the potential of eDNA analysis in providing comprehensive insights into the biodiversity of marine macrophyte ecosystems, thus informing conservation efforts and enhancing the understanding of marine ecological dynamics.

Xing, Qikun (ORCID:0000000206179027)↗

DOE OSTI2025

The reference genome for the northeastern Pacific bull kelp, Nereocystis luetkeana

Bull kelp, Nereocystis luetkeana, is a northeastern Pacific kelp with broad distribution from Alaska to central California. Its population declines have caused severe concerns in northern California, the Salish Sea in Washington, and recently in some populations in Oregon. Despite bull kelp's accumulated ecological and physiological studies, an assembled and annotated genomic reference was still unavailable. Here, we report the complete and annotated genome of Nereocystis luetkeana, produced by the California Conservation Genomics Project (CCGP), which aims to reveal genomic diversity patterns across California by sequencing the complete genomes of approximately 150 carefully selected species. The genome was assembled into 1562 scaffolds with 449.82 Mb, 80x of coverage and 22 952 gene models. BUSCO assembly showed a completeness score of 72% for the stramenopiles gene set. The mitochondria and chloroplast genome sequences have 37 Kb and 131 Mb, respectively. The orthology analysis between 10 Phaeophycean genomes showed 1065 expanded and 286 unique orthogroups for this species. Pairwise comparisons showed 542 orthogroups present only in N. luetkeana and M. pyrifera, another large-body kelp. The enrichment analysis of these orthogroups showed important functions related to central metabolism and signaling due to ATPases enrichment in these two species. This genome assembly will provide an essential resource for the ecology, evolution, conservation, and breeding of bull kelp.

California Conservation Genomics Project—CCGP↗

DOE OSTI2026

Golden Tide Opportunities

There is no abstract for this document. I have been invited to present my project progress to the Schmidt Sciences VIFF SaBRe team at their annual project meeting. This is work funded by DOE AFFO. The project title is Algal Feedstock Logistics

09 - BIOMASS FUELS↗