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At least 19 records

PCR Based Microbial Monitor for Analysis of Recycled Water Aboard the ISSA: Issues and Prospects

The monitoring of spacecraft life support systems for the presence of health threatening microorganisms is paramount for crew well being and successful completion of missions. Development of technology to monitor spacecraft recycled water based on detection and identification of the genetic material of contaminating microorganisms and viruses would be a substantial improvement over current NASA plans to monitor recycled water samples that call for the use of conventional microbiology techniques which are slow, insensitive, and labor intensive. The union of the molecular biology techniques of DNA probe hybridization and polymerase chain reaction (PCR) offers a powerful method for the detection, identification, and quantification of microorganisms and viruses. This technology is theoretically capable of assaying samples in as little as two hours with specificity and sensitivity unmatched by any other method. A major advance in probe-hybridization/PCR has come about in a technology called TaqMan(TM), which was invented by Perkin Elmer. Instrumentation using TaqMan concepts is evolving towards devices that could meet NASA's needs of size, low power use, and simplicity of operation. The chemistry and molecular biology needed to utilize these probe-hybridization/PCR instruments must evolve in parallel with the hardware. The following issues of chemistry and biology must be addressed in developing a monitor: Early in the development of a PCR-based microbial monitor it will be necessary to decide how many and which organisms does the system need the capacity to detect. We propose a set of 17 different tests that would detect groups of bacteria and fungus, as well as specific eukaryotic parasites and viruses; In order to use the great sensitivity of PCR it will be necessary to concentrate water samples using filtration. If a lower limit of detection of 1 microorganism per 100 ml is required then the microbes in a 100 ml sample must be concentrated into a volume that can be added to a PCR assay; There are not likely to be contaminants in ISSA recycled water that would inhibit PCR resulting in false-negative results; The TaqMan PCR product detection system is the most promising method for developing a rapid, highly automated gene-based microbial monitoring system. The method is inherently quantitative. NASA and other government agencies have invested in other technologies that, although potentially could lead to revolutionary advances, are not likely to mature in the next 5 years into working systems; PCR-based methods cannot distinguish between DNA or RNA of a viable microorganism and that of a non-viable organism. This may or may not be an important issue with reclaimed water on the ISSA. The recycling system probably damages the capacity of the genetic material of any bacteria or viruses killed during processing to serve as a template in a PCR desinged to amplify a large segment of DNA (less than 650 base pairs). If necessary, vital dye staining could be used in addition to PCR, to enumerate the viable cells in a water sample; The quality control methods have been developed to insure that PCR's are working properly, and that reactions are not contaminated with PCR carryover products which could lead to the generation of false-positive results; and The sequences of the small rRNA subunit gene for a large number of microorganisms are known, and they consititue the best database for rational development of the oligonucleotide reagents that give PCR its great specificity. From those gene sequences, sets of oligonucleotide primers for PCR and Taqman detection that could be used in a NASA microbial monitor were constructed using computer based methods. In addition to space utilization, a microbial monitior will have tremendous terrestrial applications. Analysis of patient samples for microbial pathogens, testing industrial effluent for biofouling bacteria, and detection biological warfare agents on the battlefield are but a few of the diverse potential uses for this technology. Once fully developed, gene-based microbial monitors will become the fundamental tool in every lab that tests for microbial contaminants, and serve as a powerful weapon in mankind's war with the germ world.

Cassell, Gail H.↗

Development of Solar Flare and Energetic Particle Prediction Portal (SEP 3 )

Solar activity is a primary factor determining the state of the Earth’s space environment, geomagnetic and ionospheric disturbances, and radiation hazards. In the current state of knowledge, machine learning (ML) methods provide essential tools for processing data, investigating relationships among various physical properties and characteristics, uncovering hidden connections, and predicting hazardous solar events. The primary difficulty in developing and applying modern machine-learning tools in heliophysics is that the essential data are scattered among over a hundred data repositories developed by instrument teams of space missions and ground-based observatories. In addition, statistical and ML methods require long time series of homogeneous measurements. To facilitate ML-ready data preparation and access, we have developed an interactive database of solar flares integrating the most essential datasets (https://solarflare.njit.edu/). The database performs an initial data processing and is automatically updated. In addition, we are developing the Solar Energetic Particle Prediction Portal (SEP3, https://sun.njit.edu/SEP3), which hosts web applications that allow users to retrieve the database records. The Portal has a search page for browsing the events from the most widely used catalogs and a dedicated space to share the most recent achievements of the team. The interactive widget can display soft X-ray and proton flux time series from GOES satellites and the flare records. The data portal has been used to evaluate the forecasts of solar proton events and investigate machine-learning approaches to SEP prediction.

SMD↗

Aqueous nitrite ion determination by selective reduction and gas phase nitric oxide chemiluminescence

An improved method of flow injection analysis for aqueous nitrite ion exploits the sensitivity and selectivity of the nitric oxide (NO) chemilluminescence detector. Trace analysis of nitrite ion in a small sample (5-160 microL) is accomplished by conversion of nitrite ion to NO by aqueous iodide in acid. The resulting NO is transported to the gas phase through a semipermeable membrane and subsequently detected by monitoring the photoemission of the reaction between NO and ozone (O3). Chemiluminescence detection is selective for measurement of NO, and, since the detection occurs in the gas-phase, neither sample coloration nor turbidity interfere. The detection limit for a 100-microL sample is 0.04 ppb of nitrite ion. The precision at the 10 ppb level is 2% relative standard deviation, and 60-180 samples can be analyzed per hour. Samples of human saliva and food extracts were analyzed; the results from a standard colorimetric measurement are compared with those from the new chemiluminescence method in order to further validate the latter method. A high degree of selectivity is obtained due to the three discriminating steps in the process: (1) the nitrite ion to NO conversion conditions are virtually specific for nitrite ion, (2) only volatile products of the conversion will be swept to the gas phase (avoiding turbidity or color in spectrophotometric methods), and (3) the NO chemiluminescence detector selectively detects the emission from the NO + O3 reaction. The method is free of interferences, offers detection limits of low parts per billion of nitrite ion, and allows the analysis of up to 180 microL-sized samples per hour, with little sample preparation and no chromatographic separation. Much smaller samples can be analyzed by this method than in previously reported batch analysis methods, which typically require 5 mL or more of sample and often need chromatographic separations as well.

NASA Discipline Environmental Health↗

Probably Fret?

Explore the source record for details and available documents.

FRET↗

A Quantitative Analysis on the Use of Supervised Machine Learning in Earth Science

Recent review papers (Ball et al., 2017; Reichstein et al., 2019) have investigated the opportunities and challenges in applying supervised machine learning (ML) techniques to Earth science problems. A common challenge is the lack of training (or labeled) data. Supervised ML, and especially deep learning (DL), require large training datasets. While there are large, open access Earth science archives, the data typically require preprocessing in preparation for supervised ML, frequently including manual labeling. Our objective is to understand the landscape of supervised ML in the Earth sciences, including which research communities have most rapidly adopted supervised ML, which algorithms are applied, and what data are used to train these algorithms. We conducted a literature survey of Earth science papers published during the last 10 years in journals from the American Geophysical Union (AGU), American Meteorological Society (AMS), the Institute of Electrical and Electronics Engineers(IEEE), and the Society of Photo-Optical Instrumentation Engineers (SPIE). We identified papers containing the terms ML, DL, or the names of individual supervised ML algorithms. "Earth science" is an additional required search term for IEEE and SPIE. We investigate trends in supervised ML usage during the 10-year study period, and manually analyzed AGU papers from 2018-2019 to enable deep-dive statistics.

Katrina S Virts↗

Using Artificial Intelligence and Machine Learning to Enhance Mission Design and Operations of the Habitable Worlds Observatory (HWO)

One key aspect in the development of HWO is the early deployment of artificial intelligence (AI) and machine learning (ML) to enhance mission science and operations. Our subtask group is part of the HWO AI/ML working group and focuses on AI and ML for mission operations. Our task group seeks to educate other HWO working groups about AI and ML capabilities for mission operations, investigate how to bridge technology gaps, and enable new capabilities particularly in the areas of observational scheduling, instrument health monitoring, and downlink operations. We focus on mission tasking / scheduling both for mission analysis in development and operations. AI and ML for mission scheduling includes: tools to support proposal calls and review, ensuring fairness in calls for proposals, community peer reviews and ease workloads, as well as in-flight and ground software development (e.g., using natural language processing (NLP) to support process automation from requirements). AI and ML for the mission’s development and operations include 1) anomaly detection and prediction (from onboard and ground based tools) to monitor the spacecraft’s health, 2) ground-based automated scheduling for mission operations including long-term and short-term planning and maintenance, and 3) flight system flexible execution (as flight proven for Spitzer and JWST) to enable robust execution despite execution variations, and 4) data analysis for prioritization (e.g., real-time data evaluation leading to autonomous actions and adjustments, high-priority identification, onboard data compression, etc.). Incorporation of ML and AI will enable HWO to address the major science questions related to exoplanet characterization, general astrophysics, and solar system exploration and also extend the boundaries of space mission technologies.

Mark Moussa↗

Image Labeler: A Web Interface to Catalog Earth Science Events

Advances in machine learning (ML) have made it possible to automatically detect Earth science phenomena from satellite imagery. While useful, ML algorithms typically require an extensive dataset containing labeled images for training. Systematic labeling and management of such datasets is quite cumbersome. With this in mind, we present the Image Labeler. Image Labeler is a fast and scalable cloud-based tool that facilitates the rapid development of Earth science event databases, in order to aid automated ML-based image classification.

Case Study↗

Maximum Likelihood Estimation of Spectra Information from Multiple Independent Astrophysics Data Sets

The Maximum Likelihood (ML) statistical theory required to estimate spectra information from an arbitrary number of astrophysics data sets produced by vastly different science instruments is developed in this paper. This theory and its successful implementation will facilitate the interpretation of spectral information from multiple astrophysics missions and thereby permit the derivation of superior spectral information based on the combination of data sets. The procedure is of significant value to both existing data sets and those to be produced by future astrophysics missions consisting of two or more detectors by allowing instrument developers to optimize each detector's design parameters through simulation studies in order to design and build complementary detectors that will maximize the precision with which the science objectives may be obtained. The benefits of this ML theory and its application is measured in terms of the reduction of the statistical errors (standard deviations) of the spectra information using the multiple data sets in concert as compared to the statistical errors of the spectra information when the data sets are considered separately, as well as any biases resulting from poor statistics in one or more of the individual data sets that might be reduced when the data sets are combined.

Howell, Leonard W., Jr.↗

Less-Complex Method of Classifying MPSK

An alternative to an optimal method of automated classification of signals modulated with M-ary phase-shift-keying (M-ary PSK or MPSK) has been derived. The alternative method is approximate, but it offers nearly optimal performance and entails much less complexity, which translates to much less computation time. Modulation classification is becoming increasingly important in radio-communication systems that utilize multiple data modulation schemes and include software-defined or software-controlled receivers. Such a receiver may "know" little a priori about an incoming signal but may be required to correctly classify its data rate, modulation type, and forward error-correction code before properly configuring itself to acquire and track the symbol timing, carrier frequency, and phase, and ultimately produce decoded bits. Modulation classification has long been an important component of military interception of initially unknown radio signals transmitted by adversaries. Modulation classification may also be useful for enabling cellular telephones to automatically recognize different signal types and configure themselves accordingly. The concept of modulation classification as outlined in the preceding paragraph is quite general. However, at the present early stage of development, and for the purpose of describing the present alternative method, the term "modulation classification" or simply "classification" signifies, more specifically, a distinction between M-ary and M'-ary PSK, where M and M' represent two different integer multiples of 2. Both the prior optimal method and the present alternative method require the acquisition of magnitude and phase values of a number (N) of consecutive baseband samples of the incoming signal + noise. The prior optimal method is based on a maximum- likelihood (ML) classification rule that requires a calculation of likelihood functions for the M and M' hypotheses: Each likelihood function is an integral, over a full cycle of carrier phase, of a complicated sum of functions of the baseband sample values, the carrier phase, the carrier-signal and noise magnitudes, and M or M'. Then the likelihood ratio, defined as the ratio between the likelihood functions, is computed, leading to the choice of whichever hypothesis - M or M'- is more likely. In the alternative method, the integral in each likelihood function is approximated by a sum over values of the integrand sampled at a number, 1, of equally spaced values of carrier phase. Used in this way, 1 is a parameter that can be adjusted to trade computational complexity against the probability of misclassification. In the limit as 1 approaches infinity, one obtains the integral form of the likelihood function and thus recovers the ML classification. The present approximate method has been tested in comparison with the ML method by means of computational simulations. The results of the simulations have shown that the performance (as quantified by probability of misclassification) of the approximate method is nearly indistinguishable from that of the ML method (see figure).

Hamkins, Jon↗

Can Machine Learning Reveal Precursors of Reversals of the Geomagnetic Axial Dipole Field?

It is well known that the axial dipole part of Earth’s magnetic field reverses polarity, so that the magnetic North Pole becomes the South Pole and vice versa. The timing of reversals is well documented for the past 160 Myr, but the conditions that lead to a reversal are still not well understood. It is not known if there are reliable ‘precursors’ of reversals (events that indicate that a reversal is upcoming) or what they might be. We investigate if machine learning (ML) techniques can reliably identify precursors of reversals based on time-series of the axial magnetic dipole field. The basic idea is to train a classifier using segments of time-series of the axial magnetic dipole. This training step requires modification of standard ML techniques to account for the fact that we are interested in rare events—a reversal is unusual, while a non-reversing field is the norm. Without our tweak, the ML classifiers lead to useless predictions. Perhaps even more importantly, the usable observational record is limited to 0–2 Ma and contains only five reversals, necessitating that we determine if the data are even sufficient to reliably train and validate an ML algorithm. To answer these questions we use several ML classifiers (linear/non-linear support vector machines and long short-term memory networks), invoke a hierarchy of numerical models (from simplified models to 3-D geodynamo simulations), and two palaeomagnetic reconstructions (PADM2M and Sint-2000). The performance of the ML classifiers varies across the models and the observational record and we provide evidence that this is not an artefact of the numerics, but rather reflects how ‘predictable’ a model or observational record is. Studying models of Earth’s magnetic field via ML classifiers thus can help with identifying shortcomings or advantages of the various models. For Earth’s magnetic field, we conclude that the ability of ML to identify precursors of reversals is limited, largely due to the small amount and low frequency resolution of data, which makes training and subsequent validation nearly impossible. Put simply: the ML techniques we tried are not currently capable of reliably identifying an axial dipole moment (ADM) precursor for geomagnetic reversals. This does not necessarily imply that such a precursor does not exist, and improvements in temporal resolution and length of ADM records may well offer better prospects in the future.

Kyle Gwirtz↗

A Robust Schema for Storing and Managing Machine Learning Data and Models

- Machine Learning (ML) has enabled models that can improve efficiency and decrease computational cost - ML models are crucial in enabling Integrated Computational Materials Engineering (ICME) - Large data sets require robust means of storing ML data and models

Brandon L. Hearley↗

Evaluating the Efficacy of Conditional Variational Autoencoders in Generating Synthetic Single Nuclei RNA-Seq Data for Space Biology Research

Astronauts are subject to unique stressors during spaceflight, leading to changes in their cellular function. However, neither astronauts nor model organisms respond the same to spaceflight, and research implicates a contribution of omics components in differential responses. Understanding how gene expression affects astronaut health is critical for the success of long-term space missions, prompting interest in developing personalized predictive models leveraging artificial intelligence (AI) and machine learning (ML) techniques. Developing such models requires extensive data, which is challenging to obtain and share. This study explores the use of conditional variational autoencoders (CVAEs) to synthetically generate single-nuclei RNA-seq (snRNA-seq) data. CVAEs build on standard variational autoencoders (VAEs) by conditioning data generation on covariates like sample identity and mission parameters, enhancing the relevance of generated data for specific contexts. For our work, we built two CVAEs with varying degrees of sparsity to optimize both interpretability and generative power. We train and validate models on existing snRNA-seq data collected from the brain tissue of mice subjected to spaceflight conditions and their ground control counterparts. We evaluate model performance using statistical tests and visualizations to compare synthetic data to real data. We aim to demonstrate that these prototype CVAE architectures could be used in future space biology work and that this is a method worth further exploring.

Sarah Golts↗

Improved Detection Technique for Solvent Rinse Cleanliness Verification

The NASA White Sands Test Facility (WSTF) has an ongoing effort to reduce or eliminate usage of cleaning solvents such as CFC-113 and its replacements. These solvents are used in the final clean and cleanliness verification processes for flight and ground support hardware, especially for oxygen systems where organic contaminants can pose an ignition hazard. For the final cleanliness verification in the standard process, the equivalent of one square foot of surface area of parts is rinsed with the solvent, and the final 100 mL of the rinse is captured. The amount of nonvolatile residue (NVR) in the solvent is determined by weight after the evaporation of the solvent. An improved process of sampling this rinse, developed at WSTF, requires evaporation of less than 2 mL of the solvent to make the cleanliness verification. Small amounts of the solvent are evaporated in a clean stainless steel cup, and the cleanliness of the stainless steel cup is measured using a commercially available surface quality monitor. The effectiveness of this new cleanliness verification technique was compared to the accepted NVR sampling procedures. Testing with known contaminants in solution, such as hydraulic fluid, fluorinated lubricants, and cutting and lubricating oils, was performed to establish a correlation between amount in solution and the process response. This report presents the approach and results and discusses the issues in establishing the surface quality monitor-based cleanliness verification.

Hornung, S. D.↗

Exploring Requirements for Software that Learns: A Research Preview

Context & motivation: The development of software that learns has revolutionized how many systems perform. For the most part, these systems are neither safety- nor mission-critical. However, as technology and aspirations advance, there is an increased desire and need for Machine Learning (ML) software in safety- and mission-critical systems, e.g., driverless cars or autonomous space robotics. Problem: In these domains, reliability is crucial and systems have to undergo much scrutiny in terms of both the developed artefacts and the adopted development process. Central to the development of such systems is the elicitation and definition of software requirements that are used to guide the design and verification process. The addition of software components that learn, and the associated capability for unforeseen behavior, makes defining detailed software requirements especially difficult. Principal ideas/results: In this paper, we identify unique characteristics of software requirements that are specific to ML components. To this end, we collect and examine requirements from both academic and industrial sources. Contribution: To the best of our knowledge, this is the first work that presents real-life, industrial patterns of requirements for ML components. Furthermore, this paper identifies key characteristics and provides a foundation for developing a taxonomy of requirements for software that learns.

Probabilistic requirements↗

Machine Learning Airport Surface Model

Future needs of the National Airspace System require decision support tools to adopt a service-oriented architecture in alignment with the FAA’s vision for an Info-Centric NAS. To achieve this, many existing systems will need to undergo a digital transformation from a monolithic decision support tool to a service-oriented architecture where individual services are exposed through well defined Application Programming Interfaces (APIs). To enable this transformation, NASA has developed the Digital Information Platform as a cloud based foundation for development of aviation services with a special focus towards Artificial Intelligence and Machine Learning (ML) services. This paper describes the work required for the transformation of NASA’s legacy surface management system to a real-time ML based decision support system deployed in the cloud. Details of the Machine Learning Operations (MLOps) infrastructure and best practices are described which enabled the end-toend lifecycle management of ML within an integrated software system. Validation results are provided from an operational field evaluation where performance was benchmarked against the legacy approach.

Jeremy Coupe↗

Developing Methods for Exercise System Kinematics Tracking

BACKGROUND How to quantify the load and forces produced by exercise equipment and their Vibration Isolation and Stabilization (VIS) platforms in-flight is an active area of investigation. Kinematic tracking paired with system modeling can provide insights as well as verification and validation of simulations used for system design and development. Traditional motion capture methods can require significant cost in equipment procurement and crew-time, but newer lessons learned can be leveraged [1]. The VIS systems of current and future exercise hardware on the International Space Station (ISS) such as the Cycle Ergometer with Vibration Isolation System (CEVIS) and the European Enhanced Exploration Exercise Device (E4D) are not currently outfitted with IMUs or similar measurement devices. Video-based methods would enable use of multi-purpose, crew-familiar flight equipment. An initial exploration of video-based solutions was performed utilizing 2-camera video from crew cycling on Teal-CEVIS on the ISS. METHODS AND RESULTS Our group has scoped a variety of video-based object tracking methods. To date, we have primarily investigated computer vision toolkits such as openCV. Techniques explored include key-point detection, background subtraction, region-of interest tracking, color-based tracking, tag masking and tracking, and corner detection. Although object-tracking and 6D pose estimation is a rich field, space applications are a unique problem that are challenging for existing software and toolkits. The majority of the existing object-tracking applications involve vehicles/pedestrians and household objects with simple backgrounds. We have identified the following features which pose particular challenges for on-station exercise equipment tracking: Busy and visually cluttered background Low-textured tracking object with relatively small motions Occlusions and motion by human subject and loose, floating objects Limited number of video cameras with no fixed global references Limited ability to add tags, markers, or visual references to the tracking object Lack of training data for Machine Learning (ML) algorithms CONCLUSION We will summarize the efficacy of techniques tested for a ground mock-trial and the on-station exercise trial. It is likely that human-in-loop feedback or a conglomerate of methods is required. ML-based methods, like those implemented for human body tracking [2], may still be a viable option, but more training data and validation is needed.

L B Nilsson↗

Developing Methods for Exercise System Kinematic Tracking

BACKGROUND How to quantify the load and forces produced by exercise equipment and their Vibration Isolation and Stabilization (VIS) platforms in-flight is an active area of investigation. Kinematic tracking paired with system modeling can provide insights as well as verification and validation of simulations used for system design and development. Traditional motion capture methods can require significant cost in equipment procurement and crew-time, but newer lessons learned can be leveraged [1]. The VIS systems of current and future exercise hardware on the International Space Station (ISS) such as the Cycle Ergometer with Vibration Isolation System (CEVIS) and the European Enhanced Exploration Exercise Device (E4D) are not currently outfitted with IMUs or similar measurement devices. Video-based methods would enable use of multi-purpose, crew-familiar flight equipment. An initial exploration of video-based solutions was performed utilizing 2-camera video from crew cycling on Teal-CEVIS on the ISS. METHODS AND RESULTS Our group has scoped a variety of video-based object tracking methods. To date, we have primarily investigated computer vision toolkits such as open CV. Techniques explored include key-point detection, background subtraction, region-of interest tracking, color-based tracking, tag masking and tracking, and corner detection. Although object-tracking and 6D pose estimation is a rich field, space applications are a unique problem that are challenging for existing software and toolkits. The majority of the existing object-tracking applications involve vehicles/pedestrians and household objects with simple backgrounds. We have identified the following features which pose particular challenges for on-station exercise equipment tracking: 1. Busy and visually cluttered background 2. Low-textured tracking object with relatively small motions 3. Occlusions and motion by human subject and loose, floating objects 4. Limited number of video cameras with no fixed global references 5. Limited ability to add tags, markers, or visual references to the tracking object 6. Lack of training data for Machine Learning (ML) algorithms CONCLUSION We will summarize the efficacy of techniques tested for a ground mock-trial and the on-station exercise trial. It is likely that human-in-loop feedback or a conglomerate of methods is required. ML-based methods, like those implemented for human body tracking [2], may still be a viable option, but more training data and validation is needed.

L Nilsson↗

Safety Assessment of a Machine Learning-Based Aircraft Emergency Braking System: A Case Study

Machine Learning (ML) is revolutionizing many technological fields, but its use in aviation remains restricted due to stringent certification requirements. Efforts by the aviation community to establish standards for certifying ML-based systems are progressing, yet challenges persist, particularly with safety assessment methods for ML-based systems. This research addresses these challenges through a case study of an autonomous emergency braking system utilizing a computer vision deep neural network (DNN). We demonstrate a safety assessment process tailored to ML-specific concerns, such as low integrity and performance variability in quantitative safety analysis. This study can serve as an illustrative example to facilitate the discussion and convergence on certification aspects for ML-based systems within the aviation community.

Safety certification↗