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DOE OSTI2026

CHESS 2025: Leaf Area Index (LAI) for meadow, shrub, tree, and understory vegetation

This dataset contains Leaf Area Index (LAI) measurements made as part of the Colorado Headwaters Ecological Spectroscopy Study (CHESS) during June and July of 2025. Data were collected in the Upper Gunnison Basin, Colorado, across three study domains: the Upper East River (CRBU), Almont Triangle (ALMO), and the Upper Taylor Basin (UPTA). Field observations of LAI were collected within 72 hours of airborne data collection by the National Ecological Observatory Network’s Aerial Observation Platform (NEON AOP). The NEON AOP collected waveform LiDAR (Light Detection and Ranging) and imaging spectrometer data in 426 spectral bands from the visible to shortwave infrared. LAI measurements were collected using the LICOR LAI-2200C Plant Canopy Analyzer following protocols outlined in the instrument manual (LI-COR 2019). Sampling targeted four distinct vegetation types: meadows, shrubs, trees, and aspen forest understory. We have archived data separately by site type because different field methods were used for each. At meadow sites, measurements were made at the four corners of 1m x 1m plots, with the instrument moving inward toward the center of the plot. At shrub sites, we measured the canopies of individual shrubs. At tree sites, we made measurements within a 10m x 10m subplot centered around a focal tree, with 30 observations taken on a regular grid. At aspen understory sites, we measured overstory trees following the tree protocol and understory herbaceous vegetation following the meadow protocol. All measurements included above-canopy (A) and below-canopy (B) readings, with specific protocols for scattering correction measurements in direct-sun conditions. Data were processed using the R package `rlai` (Worsham 2025). This package includes functions to calculate LAI, gap fraction, apparent clumping factor (Ω), scattering correction, and other canopy metrics. Package contents: Full file descriptions appear in ‘flmd.csv’. Files named according to the convention ‘lai_*_summary_data_cleaned.csv’ contain summary values of LAI, apparent clumping factor (Ωapp), and scattering correction factors for each site. These are the analysis-ready products that most data users will work with. Files named ‘lai_*_metadata_cleaned.csv’ contain additional site-level observations made during field collection. We have also archived intermediate and supplementary data for users who wish to check our processing approach or apply alternative methods. ‘raw_lai_2200C.zip’ contains the raw files as read from the LI-COR instrument, with no processing applied, in TXT format. The zip archive contains subdirectories by site type, which are further subdivided by sampling area. Filenames correspond to the sampling site number. ‘intermediate_results.zip’ contains detailed output from the processing routines, in JSON format. The zip archive contains subdirectories by site type; filenames correspond to the sampling site number. ‘scattering_correction_logs.zip’ contains logfiles from the implementation of Kobayashi et al.'s (2013) scattering correction algorithm. The logfiles report values of several parameters at each iteration of the algorithm, as the model converges toward a stable solution. They are intended for users who want to verify scattering correction performance. The zip archive contains subdirectories by site type; filenames correspond to the sampling site number. ‘spot_checks.csv’ reports LAI and other values for a small number of files processed with LI-COR FV2200 software (LI-COR 2013) using the same control parameters as in our R-based approach. Additional metadata are provided in a data dictionary describing column names and definitions (dd.csv), and in a file-level metadata file (flmd.csv). All zip files can be expanded with common archive utilities. TXT, CSV, and JSON files can be ingested into R or Python computing environments or read in common text editor utilities. Geospatial information: Geospatial data for mapping measurement site locations are in the files CHESS_polygons_lai_UTM.geojson, CHESS_polygons_shrub_UTM.geojson, and CHESS_polygons_meadow_UTM.geojson in the companion geospatial package for the 2025 CHESS campaign, ‘CHESS 2025: Location data for field observations and sampling’ (Henderson et al., 2026). CHESS Project Description: The Colorado Headwaters Ecological Spectroscopy Study (CHESS) comprised a multi-week airborne remote sensing and field observation campaign in the Upper Gunnison Basin, Colorado, conducted in June and July of 2025. Airborne remote sensing was conducted by the National Ecological Observatory Network Airborne Observation Platform (NEON AOP), concurrent with a field campaign run by the Rocky Mountain Biological Laboratory (RMBL), the Lawrence Berkeley National Laboratory (LBNL) and SLAC National Accelerator Laboratory Watershed Function Science Focus Area (SFA), and NASA-JPL (Jet Propulsion Laboratory) Earth Surface Mineral Dust Source Investigation (EMIT) program. Between June 10 and July 18, 2025, the NEON AOP flight team collected high-resolution aerial imaging spectroscopy and Light Detection and Ranging (LiDAR) data over three domains: the Upper East River (CRBU), Almont Triangle (ALMO), and the Upper Taylor Basin (UPTA). In coordination with the flights, a field campaign acquired ground-truth observations, including observations of vegetation composition, foliar traits, forest demography, and subsurface properties in 18 core sampling areas within the domains. Additional surface water observations were taken at over 380 point locations. All CHESS campaign datasets can be found within the CHESS ESS-DIVE data portal: https://data.ess-dive.lbl.gov/portals/chess. Funding Acknowledgement: Field and remote-sensing data acquisition was performed under a grant from the National Aeronautics and Space Administration (80NSSC24K1005). This work was also supported by the Watershed Function Science Focus Area at Lawrence Berkeley National Laboratory funded by the US Department of Energy, Office of Science, Biological and Environmental Research under Contract No. DE-AC02-05CH11231. * Todorov and Worsham are co–first authors.

2018 NEON and 2025 CHESS Campaigns↗

DOE OSTI2025

High-resolution leaf area index maps generated from unoccupied aerial system, Teller Mile 27, Seward Peninsula, Alaska

Leaf area index (LAI), a measure of the amount of one-side leaf area per ground unit, is an important indicator of plant carbon, energy, and water cycle. In the heterogeneous Arctic landscapes, it has been challenging to accurately measure LAI across species and space needed for Earth system model validation. Here, we use multispectral unoccupied aerial systems (UASs) to scale up and map leaf area index (LAI) , in a low-Arctic tundra landscape on the Seward Peninsula, Alaska. We linked previous published LAI measurements with high-resolution, UAS-collected multispectral data collected over the region of Next Generation Ecosystem Experiments in the Arctic (NGEE Arctic)’s Teller Mile Maker 27 site in 2022 to develop random forest (RF) machine learning models to predict and map LAI. 100 RF models were developed to account for uncertainties in ground LAI plot measurements and process scaling. This dataset includes a raster (*.tif) map of the mean LAI value of the 100 RF models, a raster (*.tif) map of the standard deviation of the RF-modeled LAI data, and a user guide (*.pdf).

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2026

Monthly Quality-filtered Aggregation of NOAA Climate Data Record (CDR) of AVHRR (Version 5) and VIIRS (Version 1) Leaf Area Index (LAI) and Fraction of Absorbed Photosynthetically Active Radiation (FAPAR)

This dataset contains gridded monthly Leaf Area Index (LAI) derived from the daily NOAA Climate Data Record (CDR) of AVHRR (Version 5) and VIIRS (Version 1) Leaf Area Index (LAI) and Fraction of Absorbed Photosynthetically Active Radiation (FAPAR). This data record spans from 1981 to 2024 using data from NOAA polar orbiting satellites: NOAA-7, -9, -11, -14, -16, -17, -18, -19 and S-NPP. The data are projected on a 0.05 degree x 0.05 degree global grid, as in the original CDR. The original CDR is one of the Land Surface CDR products produced by the NASA Goddard Space Flight Center (GSFC) and the University of Maryland (UMD), which is accompanied by algorithm documentation, data flow diagram and source code for the NOAA CDR Program. This dataset is in the netCDF-4 file format following ACDD and CF Conventions. This dataset has applied quality assurance information to only include "OK" data from the original CDR in the monthly aggregation.

Vermote, Eric [NASA Goddard Space Flight Center (G↗

DOE OSTI2025

Monthly Quality-filtered Aggregation of NOAA Climate Data Record (CDR) of AVHRR Leaf Area Index (LAI) and Fraction of Absorbed Photosynthetically Active Radiation (FAPAR), Version 5

This dataset contains gridded monthly Leaf Area Index (LAI) derived from the daily NOAA Climate Data Record (CDR) of AVHRR Leaf Area Index (LAI) and Fraction of Absorbed Photosynthetically Active Radiation (FAPAR), Version 5. This data record spans from 1981 to 2018 using data from eight NOAA polar orbiting satellites: NOAA-7, -9, -11, -14, -16, -17, -18 and -19. The data are projected on a 0.05 degree x 0.05 degree global grid, as in the original CDR. The original CDR is one of the Land Surface CDR Version 5 products produced by the NASA Goddard Space Flight Center (GSFC) and the University of Maryland (UMD), which is accompanied by algorithm documentation, data flow diagram and source code for the NOAA CDR Program. This dataset is in the netCDF-4 file format following ACDD and CF Conventions. This dataset has applied quality assurance information to only include "OK" data from the original CDR in the monthly aggregation.

Vermote, Eric [NASA Goddard Space Flight Center (G↗

DOE OSTI2025

Vertical canopy gradients of respiration drive plant carbon budgets and leaf area index

Despite its importance for determining global carbon fluxes, leaf respiration remains poorly constrained in land surface models (LSMs). We tested the sensitivity of the Energy Exascale Earth System Model Land Model – Functionally Assembled Terrestrial Ecosystem Simulator (ELM-FATES) to variation in the canopy gradients of leaf maintenance respiration (R dark ). We ran global and point simulations varying the canopy gradient of R dark to explore the impacts on forest structure, composition, and carbon cycling. In global simulations, steeper canopy gradients of R dark lead to increased understory survival and leaf biomass. Leaf area index (LAI) increased up to 77% in tropical regions compared with the default parameterization, improving alignment with remotely sensed benchmarks. Global vegetation carbon varied from 308 Pg C to 449 Pg C across the ensemble. In tropical forest simulations, steeper gradients of R dark had a large impact on successional dynamics. Results show the importance of canopy gradients in leaf traits and fluxes for determining plant carbon budgets and emergent ecosystem properties such as competitive dynamics, LAI, and vegetation carbon. The high-model sensitivity to canopy gradients in R dark highlights the need for more observations of how leaf traits and fluxes vary along light micro-environments to inform critical dynamics in LSMs.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2025

Reviving the carbon sink: The influence of moderate wind disturbance in a secondary temperate mixed forest

Global forests are increasingly exposed to climate-driven perturbations, which may in turn alter their climate mitigation potential. As tropical cyclones expand poleward due to climate warming, wind disturbances in temperate forests have become increasingly frequent. The consequences of moderate wind disturbances remain poorly understood, hindering efforts to quantify their role in the global carbon cycle. Here, we used 16 years of continuous eddy covariance and biometric measurements to investigate the impacts of moderate wind disturbances on the structure and carbon sink dynamics of a temperate forest in Northeast China. Following Typhoon Maysak in 2020, the mortality of large trees (particularly the aging pioneer species) increased ninefold, whereas that of small trees decreased by nearly half. Both stand basal area and leaf area index were reduced between 2019 and 2023, with aging pioneer tree species being more vulnerable than mid-to-late species to wind disturbances. Shifts in species composition altered the environmental sensitivity of forest carbon sink function. Unexpectedly, wind disturbances reversed the declining trends in net ecosystem production and ecosystem carbon use efficiency of this secondary forest. A novel composite structural indicator—the standardized leaf area index (the maximum leaf area supported by per basal area of the stand)—provided robust predictions (R 2 > 0.4) of carbon sink dynamics throughout the study period. The selective removal of less efficient pioneer trees accelerated succession and reversed the aging-related decline in forest carbon sink strength and carbon use efficiency. In conclusion, these findings highlight the potential role of moderate wind disturbances in enhancing forest carbon sink function and offer a framework for understanding, assessing, and predicting forest carbon dynamics under increasing disturbance frequencies driven by climate change.

Carbon sink↗

DOE OSTI2025

Using satellite data to assess Hurricane Helene’s impact on vegetation by land use in the CSRA

Many regions within Georgia, South Carolina, and North Carolina experienced record-breaking rainfall and catastrophic winds due to Hurricane Helene. Helene made landfall on Florida’s big bend on September 26 th , 2024, as a category 4 hurricane, and tracked northward through Georgia and the southern Appalachian Mountains before dissipating on September 29 th , 2024. One significant impact of the hurricane was severe damage to tree canopies across the southeastern United States. This study utilizes satellite-based remotely sensed data provided by the National Aeronautical and Space Administration (NASA) to examine the resilience of these tree canopies following the hurricane. Specifically, the Normalized Difference Vegetation Index (NDVI), Leaf Area Index (LAI), Land Cover Type, Soil Moisture Active Passive (SMAP), and the Global Precipitation Measurement (GPM) mission datasets were employed to study the tree canopy’s response to such events in the Central Savannah River Area (CSRA). A significant increase was observed in the LAI in November of 2024. This increase in LAI was likely influenced by warmer-than-average temperatures throughout October of 2024, along with a second record-breaking rainfall event in the CSRA on November 6th, 2024. The LAI increase was then broken down into land cover type to understand which areas contributed most. The complex nature and resilience of trees became evident, offering opportunities for further exploration and application in urban planning, emergency response, and environmental management.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2025

Files and scripts to support manuscript Needham et al. Canopy Gradients of Respiration

This dataset includes the parameter files, relevant output files, and scripts to perform analysis with Jupyter notebooks that support the manuscript Needham et al 2025 “Canopy Gradients of Respiration Drive Plant Carbon Budgets and Leaf Area Index.” We add functionality to the Functionally Assembled Terrestrial Ecosystem Simulator (FATES) to allow flexible vertical gradients of leaf maintenance respiration (Rdark) and maximum carboxylation rate (Vcmax) through the canopy. We test the sensitivity of FATES to canopy gradients in Rdark, both in global simulations to assess broad scale impacts on leaf area index (LAI) and vegetation carbon, and in single site simulations where we assess impacts on plant functional type (PFT) competitive dynamics. Parameter files are netcdf files that can be converted to human readable .cdl files using NCO tools. Analysis scripts are Jupyter notebook files. These can be opened and run using the open source Jupyter notebook software. Model outputs are netcdf files.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2026

Data and Scripts Associated with "Modeling Ecohydrological Responses of Vegetation to Urban Microclimates Using the E3SM Land Model"

This dataset supports the study of vegetation ecohydrological responses to urban microclimates using the land component of the Energy Exascale Earth System Model (ELM) at four urban sites in Knoxville, Tennessee, USA. It includes the model inputs, simulation outputs, and associated scripts for running ELM simulations and analyzing the resulting data. The Model_Inputs folder includes static surface data, satellite-derived phenology (i.e., leaf area index), and atmospheric forcing data used to drive ELM simulations. Detailed descriptions of these datasets are provided in Section 2.3.2 of the associated manuscript. The Model_Outputs folder contains simulation results for the baseline, treatment, and ensemble experiments. Outputs from the baseline and treatment simulations are provided as raw ELM NetCDF files. Because the raw outputs from the 4,000-member ensemble are prohibitively large, the ensemble results are provided as summarized CSV files, which also serve as the source data for Figure 5 of the associated manuscript. The Scripts folder contains three components: E3SM, the core codebase of the Energy Exascale Earth System Model (E3SM); elm-olmt, the Offline Land Model Testbed (OLMT) used to perform the simulations; and knoxville_elm, which contains the analysis scripts used to process model outputs and generate the figures and results presented in the associated manuscript. Additional information is provided in Scripts_readme.txt within the Scripts directory.

Lu, Xiaoman [ORNL] (ORCID:0000000306698780)↗

DOE OSTI2026

Data and scripts associated with a manuscript analyzing ELM-FATES parameter sensitivity under pre-fire and postfire scenarios using machine learning

NOTE: The manuscript associated with this data package is currently in review. The data may be revised based on reviewer feedback. Upon manuscript acceptance, this data package will be updated with the final dataset and additional metadata. This data package is associated with the manuscript “Fire Severity-Dependent Shifts in Vegetation Parameter Sensitivity: A Pre- and Post-Fire Analysis Using ELM-FATES and Explainable AI” submitted to Journal of Advances in Modeling Earth Systems (Zahura et al. 2026). The study examines vegetation physiological parameters controlling pre-fire and post-fire vegetation dynamics. To support this analysis, 73 vegetation parameters in Functionally Assembled Terrestrial Ecosystem Simulator (FATES) (Fisher et al., 2018) , which is coupled with E3SM (Energy Exascale Earth System Model) land model (ELM, ELM-FATES), were perturbed using a Sobol sequence to generate 1,024 ensemble members for two plant functional types: needleleaf evergreen extratropical trees (NEET) and C3 grass. Simulations were conducted for the pre-fire period (2016) and post-fire period (2018–2023). Burn severity was represented by modifying the Nesterov index in FATES to 75,000, 150,000, and 300,000 for low, moderate, and high severity, respectively. A no-fire scenario was also included. Simulations were performed for 16 grid cells in the American River Watershed across different burn severities and plant functional types. XGBoost (eXtreme Gradient Boosting) models were trained using the parameter ensembles and ELM-FATES-simulated outputs, including leaf area index (LAI), gross primary productivity (GPP), aboveground biomass, vegetation evaporation, transpiration, and soil evaporation. Models were trained separately for each year and burn severity, followed by SHAP (SHapley Additive exPlanations) analysis to identify changes in dominant parameters after fire disturbance. For details on how to navigate data packages generated by this project, see https://data.ess-dive.lbl.gov/portals/PNNLRiverCorridorSFA/About. The data package contains the ELM-FATES simulation data. The scripts and data related to the analysis will be added later. The inputs and outputs from ELM-FATES are inside the “FATES” folder. “FATES_domain_surface” contains the domain and surface netcdfs that were used to run ELM-FATES in the study area. “FATES_parameters” contains the 1024 ensembles that were generated using Sobol sequence. “FATES_outputs” folder contains ELM-FATES simulated variables. All files are .csv and .nc (NetCDF).

Aboveground biomass↗

DOE OSTI2026

Terrestrial laser scanning data (Levels 0 and 1) for Pasoh, Malaysia, Sep 2024

This data package contains data from terrestrial laser scanning (TLS) at the Pasoh Forest Reserve, Malaysia. The Pasoh Forest Reserve is a facility of the Forest Research Institute Malaysia, and contains evergreen lowland dipterocarp forest. The Next-Generation Ecosystem Experiments Tropics (NGEE-Tropics) study areas at Pasoh were established to study how different species respond to climatic variation and soil water availability. Two study areas were chosen representing different topography and species. The TLS data archived here were collected to provide detailed, three-dimensional information about forest structure. Specifically, data were collected to allow tree-level characterization of woody structure and leaf area for 12 focal trees with FloraPulse and sap flux sensors, facilitating estimation of woody biomass and leaf area to allow upscaling of water content and transpiration data to the tree-level. Scan positions were not selected to provide consistent data for non-focal trees with the study areas. This data package contains the following data: - High-level files document further details of the campaign and data package: 1_CampaignSummary.csv provides details about the campaign and study site, 2_ScanAreasDetail.csv provides details about each separate scan area (groups of scans post-processed into a single point cloud), 3_TerrestrialLidarSensor.csv provides further technical details about the Riegl VZ-400i TLS sensor, TLS_CSV_dd.csv is a CSV Data Dictionary providing information about the fields in CSV files following the ESS-DIVE CSV File Formatting Guidelines Reporting Format, TLS_flmd.csv is a File Level Metadata file providing information about each file in the data package following the ESS-DIVE File Level Metadata Reporting Format, and README.txt is a text file describing the overall project and file structure. - Level 0 data are the raw data (.PROJ folders) as recorded by the Riegl VZ-400i TLS instrument before scan co-registration and post-processing with the Riegl's proprietary RiSCAN PRO software, which requires a license. - Level 1 data contain post-processed, co-registered data from each scan area. The "PointClouds" folder for each scan area contains a .las file with 1 cm resolution point cloud data exported from RiSCAN PRO. These are the main files likely to be of interest to most users and can be further processed with any software capable of manipulating .las files (e.g. Python, R CloudCompare). The "Project Information" folder contains log files from post-processing in RiSCAN PRO that may be of interest to users who want to see detailed records of post-processing, including all PDF reports generated by RiSCAN PRO. The "ScanPositions" folder contains information about the final position of all TLS scans, after post-processing, in multiple formats. The file ScanPositions_*.csv provides final geo-referenced scan positions, and the file SOP_backup_*.csv can be used in RiSCAN PRO to restore the co-registered scan positions if users wish to re-process raw data (Level 0 .PROJ folders) with RiSCAN PRO software (e.g., subsample to a different resolution, exclude a certain scan position, or apply different filters on reflectance or deviation values) without redoing time-consuming co-registration steps.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2025

Data and Scripts associated with a manuscript on ecosystem responses to wildfires in the Columbia River Basin

This data package is associated with the publication “Ecosystem leaf area, gross primary production, and evapotranspiration responses to wildfire in the Columbia River Basin” submitted to Biogeosciences (Shi et al., 2024; doi: 10.22541/au.171053013.30286044/v1). In this research, data products, leaf area index (LAI), gross primary production (GPP), and evapotranspiration (ET), from the Moderate Resolution Imaging Spectroradiometer (MODIS) are used to quantify the resistance and resilience of different ecosystem types in the Columbia River Basin (CRB). A machine learning algorithm, random forest (RF), was used to examine the impacts of precipitation, vapor pressure deficit (VPD), and burn severity from Monitoring Trends in Burn Severity (MTBS) on ecosystem resilience. The data package includes the processed MODIS data products, precipitation, VPD, and burn severity in 138 fire regions in CRB and the input files for RF model training. This data package includes six folders. The MODIS products are included in three MODIS_* folders with shell scripts for data clipping and *ncl files for data processing: (1) “/MODIS_LAI_CRB”; (2) “/MODIS_GPP_CRB”; and (3) “/MODIS_ET_CRB”. All the processed data for each fire event are NetCDF formatted. The MTBS burn severity data and the shell and *ncl scripts used for data processing are in the folder named (4) “MTBS_fire”. The ERA meteorological fields and the data processing scritps are in (5) “ERA_Var_CR”. All the scripts for figure development are in the format of *ncl and in the folder (6) “paper_scripts”. See the file ending in “flmd.csv” for a list of all files contained in this data package and descriptions for each. Tabular column headers and units are described in the data dictionary file ending in “dd.csv”.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2025

Transfer learning-based soybean LAI estimations by integrating PROSAIL, UAV, and PlanetScope imagery

Accurate Leaf Area Index (LAI) estimations at the soybean plot scale is achievable using high-resolution Unmanned Aerial Vehicle (UAV) imagery and field measurement samples. However, the limited coverage of UAV flights restricts large-scale remote sensing monitoring in expansive soybean fields. This study leverages the broad coverage and 3-m resolution of PlanetScope satellite imagery to extend LAI prediction from UAV to satellite scales through transfer learning, using UAV-scale LAI estimates as a benchmark to validate cross-scale consistency. To address this challenge, this study proposed the LAI-TransNet, a two-stage transfer learning framework designed for precise and scalable soybean LAI prediction across large areas, demonstrating its effectiveness in cross-scale monitoring. In Stage 1, a UAV-scale benchmark is established using PROSAIL-simulated UAV reflectance data (UAV-Sim) and field-measured soybean LAI. Traditional machine learning, deep learning, and transfer learning models are trained on a hybrid UAV-Sim and field-measured dataset (UAV-Sim_Measured), with the transfer learning model CNN-TL, fine-tuned using pre-trained weights derived from UAV-Sim, achieving the highest accuracy (R 2 = 0.81, RMSE = 0.64 m 2 /m 2 , rRMSE = 11.5 %). In Stage 2, LAI-TransNet is developed by fine-tuning the CNN-TL model on PlanetScope simulated data (PS-Sim), preprocessed via cross-domain mapping to align UAV and satellite spectral features. Real PlanetScope imagery is corrected for reflectance consistency with reference to UAV imagery spectral profiles. LAI-TransNet outperforms other deep learning models trained directly on PS-Sim (R 2 = 0.69 vs. 0.60–0.63), ensuring robust cross-scale consistency. In conclusion, by bridging UAV and satellite scales, LAI-TransNet enables large-scale soybean LAI monitoring, enhancing precision agriculture management through improved monitoring with the PlanetScope imagery.

Leaf area index (LAI)↗

DOE OSTI2024

Representing cropping systems with the MEMS 2 ecosystem model

Abstract Croplands have been the focus of substantial investigation due to their considerable potential for sequestering carbon. Understanding the potential for soil organic carbon (SOC) sequestration and necessary management strategies will be enabled with accurate process‐based models. Accurately representing crop growth and agricultural practices will be critical for realistic SOC modeling. The MEMS 2 model incorporates a current understanding of SOC formation and stabilization, measurable SOC pools, and deep SOC dynamics and is seen as a highly promising tool to inform management intervention for SOC sequestration. Thus far, MEMS 2 has been developed to represent grasslands. In this study, we further developed MEMS 2 to model annual grain crops and common agricultural practices, such as irrigation, fertilization, harvesting, and tillage. Using four Ameriflux sites, we demonstrated an accurate simulation of crop growth and development. Model performance was strong for simulating aboveground biomass (index of agreement [d] range of 0.89–0.98) and green leaf area index (dfrom 0.90 to 0.96) across corn, soybean, and winter wheat. Good agreement with observations was also achieved for net ecosystem CO 2 exchange (dfrom 0.90 to 0.96), evapotranspiration (dfrom 0.91 to 0.94), and soil temperature (dof 0.96), while discrepancy with the available soil water content data remain (dfrom 0.14 to 0.81 at four depths to 100 cm). While we will continue model testing and improvement, MEMS 2 (version 2.14) has now demonstrated its ability to effectively simulate the growth of common grain crops and practices.

Agriculture↗

DOE OSTI2025

Canopy Structure Exhibits Linear and Nonlinear Links to Biome‐Level Maximum Light Use Efficiency

Maximum light use efficiency (ε max ) represents a plant's capacity to convert light into carbon during photosynthesis. Although prior studies have explored ε max variations between sunlit and shaded leaves or its temporal ties to canopy structure, the spatial relationship between biome-level ε max (ε biome ) and biome structure remains poorly understood. We analysed data from 320 eddy covariance sites (~855 site-years) with satellite-derived near-infrared reflectance of vegetation (NIRv) and leaf area index (LAI). We introduced NIRvN (NIRv/LAI) to isolate architectural effects from leaf quantity. Site-level ε max was calculated and aggregated by biome to derive ε biome . Results show ε biome rises nonlinearly with NIRv and LAI, saturating at high LAI, with crops and tropical evergreen forests deviating from this trend. Conversely, ε biome decreases linearly with increasing NIRvN, indicating that biomes with greater NIR scattering efficiency exhibit lower ε biome . These results enhance understanding of structural influences on carbon uptake across global biomes.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2025

Observations and modeling reveal that heatwaves reduce photosynthesis, plant carbon reserves, and net carbon uptake

Heatwaves threaten ecosystem carbon balances, yet the mechanisms driving short-term carbon flux responses remain poorly understood. Here, integrating high-frequency eddy covariance (EC) data from 140 global flux tower sites (872 site-years) with detailed process-based modeling, we examine ecosystem responses during and immediately after heatwaves. We show that heatwaves caused a −40% (range [−29%, −128%]) reduction in net ecosystem productivity (NEP) compared to pre-heatwave values, with this reduction persisting over the following two weeks (−38% range [+3%, −154%]). We attributed NEP decreases to photosynthesis decreases more than to ecosystem respiration (RE) increases. Forest sites had greater NEP decreases during heatwaves than non-forest sites, but remained carbon sinks afterwards, indicating resilience. Our modeling analysis of extreme heatwaves at selected EC sites shows that decreased photosynthesis, increased maintenance respiration, and decreased plant non-structural carbon reserves during heatwaves drive carbon cycle changes that persist for weeks. Consistent with phenocam observations, we modeled a reduction in leaf area index caused by reduced non-structural carbon reserves, leading to early leaf senescence and longer-term impacts. Ongoing increases in heatwaves are therefore likely to reduce NEP across a range of ecosystems, exacerbating carbon cycle feedback.

carbon cycle↗

DOE OSTI2025

Reducing Long‐Standing Surface Ozone Overestimation in Earth System Modeling by High‐Resolution Simulation and Dry Deposition Improvement

The overestimation of surface ozone concentration in low‐resolution global atmospheric chemistry and climate models has been a long‐standing issue. We first update the ozone dry deposition scheme in both high‐ (0.25°) and low‐resolution (1°) Community Earth System Model (CESM) version 1.3 runs, by adding the effects of leaf area index and correcting the sunlit and shaded fractions of stomatal resistances. With this update, 5‐year‐long summer simulations (2015–2019) using the low‐resolution CESM still exhibit substantial ozone overestimation (by 6.0–16.2 ppbv) over the U.S., Europe, eastern China, and ozone pollution hotspots. The ozone dry deposition scheme is further improved by adjusting the leaf cuticle conductance, reducing the mean ozone bias by 19%, and increasing the model resolution further reduces the ozone overestimation by 43%. We elucidate the mechanism by which model grid spacing influences simulated ozone, revealing distinctive pathways in urban versus rural areas. In rural areas, grid spacing mainly affects daytime ozone levels, where additional NO x emissions from nearby urban areas result in an ozone boost and overestimation in low‐resolution simulations. In contrast, over urban areas, daytime ozone overestimation follows a similar mechanism due to the influence of volatile organic compounds from surrounding rural areas. However, nighttime ozone overestimation is closely linked to weakened NO titration owing to the redistribution of urban NO x to rural areas. Additionally, stratosphere‐troposphere exchange may also contribute to reducing ozone bias in high‐resolution simulations, warranting further investigation. This optimized high‐resolution CESM may enhance understanding of ozone formation mechanisms, sources, and changes in a warming climate.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2024

Changes in high-latitude surface energy balance driven by snowpack and vegetation dynamics under warmer climate

With rapid climate warming, expected changes in snowpack and vegetation will alter the seasonal surface albedo of high-latitude ecosystems. The extent to which these albedo changes may affect surface energy balances and thus soil temperatures is uncertain, but represents a potentially important component of ecosystem feedbacks to climate change. Here, we apply a well-tested process-rich ecosystem model, ecosys , to examine changes in seasonal surface albedo and soil temperature driven by climate-induced snowpack and vegetation changes across Alaska under a warmer twenty-first century climate. Under the Representative Concentration Pathway 8.5 climate change scenario, the modeled changes in surface albedo exhibited large seasonal and spatial variations. We found spring albedo decreases driven by increases in snow-free periods (>20 d) and an extended growing season length that resulted in greater gains in leaf area index (LAI) in most parts of Alaska. In contrast, we modeled increases in summer and winter albedo (despite modeled increases in LAI) across much of the boreal forest due to an increased proportion of aspen, which has a higher leaf albedo than the currently dominant black spruce. Modeled latent heat fluxes generally increase across the twenty-first century, particularly during the spring and summer. Overall, climate warming and changes in surface energy fluxes resulted in a 3.5 ± 0.50 °C increase in spatial- and annual-averaged top 10 cm surface soil temperatures across Alaskan ecosystems by the year 2100, with larger increases in tundra than boreal forest regions. We conclude that under warmer climates, seasonal variations in albedo and surface energy fluxes are particularly pronounced during the spring and summer, driven by changes in snowpack and vegetation dynamics.

54 ENVIRONMENTAL SCIENCES↗