Engineering Papers⌕ Search

SEARCH · Engineering Papers

Results for “Identifiers”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 19 records
All sourcesNASA NTRSDOE OSTI
NASA NTRS2015

Normalizing Resource Identifiers using Lexicons in the Global Change Information System: Linking Earth Science Identifiers, Concepts, and Communities

Earth Science informatics involves collaboration between multiple groups of people with diverse specializations and goals,often using variations in terminology to refer to common resources. The uniformity of the resource identifiers often does not cross organizational boundaries. Because of this, permanent, widely used, unambiguous identifiers for resources are elusive. We examine real world cases of changing and inconsistent identifiers which inherently work against persistence and uniformity. We also present a solution which mediates factors in these situations; namely the creation of lexicons:mappings of sets of terms to URIs which are curated within the Global Change Information System (GCIS). We discuss aspects of the GCIS which facilitate the use of lexicons: an information model which disambiguates resources, a RESTful API which provides metadata through content-negotiation, and a strategy for long term curation of URIs, including mechanisms for handling changes to URIs and variations in terms used by different communities while providing persistent URIs and preserving relationships between resources We provide working definitions of terms,contexts, and lexicons, and relate them to the practical challenges of disambiguation and curation. We also discuss the mechanisms employed and architecture of the GCIS, and how these choices facilitate representation of persistent identifiers and mappings of them to identifiers used colloquially within various earth science communities of practice.

Linkded Data↗
DOE OSTI2021

Identifying Boron Active Sites for the Oxidative Dehydrogenation of Propane

Oxidative dehydrogenation of propane (ODHP) to propylene could have a significant impact on the production of this critical chemical intermediate, if appropriate catalysts can be discovered. Recently, heterogeneous catalysts based on boron (oxides and nitrides) have been demonstrated to be promising for ODHP, but their active sites have not been conclusively identified. Here, we report that the deposition of differently sized boronic acids into the micropores of silica supports results in different distributions of surface borate species after calcination. Furthermore, these materials, in turn, display a wide range of rates in ODHP but similar selectivity, suggesting that they differ only in the numbers of active sites. Features identified by in situ Raman, IR, and magic-angle-spinning 11 B solid-state NMR spectroscopies are compared to catalyst activity. This correlation identifies the S2 borate species, a hydroxylated nonring boron, as the likely active site and provides a target for directed syntheses of future catalysts.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2021

Hypergraph Models of Biological Networks to Identify Genes Critical to Pathogenic Viral Response

Motivation: Representing biological networks as graphs is a powerful approach to reveal underlying patterns, signatures, and critical components from high-throughput biomolecular data. However, graphs do not natively capture the multi-way relationships present among genes and proteins in biological systems such as protein complexes, metabolic reactions, and signal transduction pathways. Hypergraphs are generalizations of graphs that naturally model multi-way interactions in data, and we therefore seek to understand how they can more faithfully identify, and potentially predict, complex relationships in genomic expression data sets. Results: We compiled a novel data set of transcriptional host response to pathogenic viral infections and formulated relationships between genes as a hypergraph where hyperedges are differentially expressed genes and vertices represent conditions. We find that hypergraph betweenness centrality is a superior method for identification of genes important to viral response when compared with graph centrality. Our results demonstrate the utility of using hypergraphs to represent complex biological systems, and highlight potentially interesting biological results about host response to highly pathogenic viruses.

systems biology, hypergraph, viral infection, biol↗
DOE OSTI2020

Learning from existing photovoltaic technologies to identify alternative perovskite module designs

Perovskite solar cells have now become the most efficient of all multicrystalline thin film photovoltaic technologies, reaching 25.2% in 2019. This outstanding figure of merit has only been achieved on small lab-scale devices, with significantly lower performance when processed on larger more industrially relevant substrate sizes. Perovskite modules, connecting several smaller area cells together, are commonly demonstrated with a superstrate monolithic interconnection method. However, several other module designs exist and remain largely unexplored by the perovskite community. In this work, we review and highlight those alternatives and discuss their advantages and limitations. We propose that a singulated substrate-oriented module design, using metallic substrates, could provide a quicker path to seeing highly efficient, lightweight, and flexible perovskite modules on the market, while mitigating near-term technical risks. Finally, as an experimental starting-point towards this design, we demonstrate a substrate-oriented all-perovskite 2-terminal tandem with 18% efficiency.

14 SOLAR ENERGY↗
DOE OSTI2020

The sensitive surface chemistry of Co-free, Ni-rich layered oxides: identifying experimental conditions that influence characterization results

Recent studies have suggested that Co-free, Ni-rich layered cathodes (e.g., doped LiNiO2) can provide promising battery performance for practical applications. However, these layered cathodes suffer from significant surface instability during various stages of the sample history, which generates inherent challenges for achieving stable battery performance and obtaining statistically representative characterization results. To reliably report the surface chemistry of these materials, delicate controls of stepwise sample preparation are required. In this study, we aim to reveal how the surface chemistry of LiNiO2 based materials changes with various environments, including human exhalation, sample storage, sample preparation, electrochemistry cycling, and surface doping. Our results demonstrate that the surface of these materials is highly reactive and prone to alter at various stages of sample handling and characterization. The sensitive surface could impact the interpretation of the surface chemical and structural information, including surface carbonate formation, transition metal reduction and dissolution, and surface reconstruction. Importantly, the heterogeneity of the surface degradation calls for a consolidation of nanoscale, high-resolution characterization, and ensemble-averaged methods in order to improve statistical representation. Furthermore, the doping chemistry can effectively mitigate the surface degradation and improve overall battery performance due to the enhanced surface oxygen retention. Our study highlights the necessity of strict measurements through complementary characterizations at multiple length scales to eliminate unintentional biased conclusions.

surface chemistry, Co-free Ni-rich cathodes, Istab↗
DOE OSTI2022

Leaf microscopy applications in photosynthesis research: identifying the gaps

Abstract Leaf imaging via microscopy has provided critical insights into research on photosynthesis at multiple junctures, from the early understanding of the role of stomata, through elucidating C4 photosynthesis via Kranz anatomy and chloroplast arrangement in single cells, to detailed explorations of diffusion pathways and light utilization gradients within leaves. In recent decades, the original two-dimensional (2D) explorations have begun to be visualized in three-dimensional (3D) space, revising our understanding of structure–function relationships between internal leaf anatomy and photosynthesis. In particular, advancing new technologies and analyses are providing fresh insight into the relationship between leaf cellular components and improving the ability to model net carbon fixation, water use efficiency, and metabolite turnover rate in leaves. While ground-breaking developments in imaging tools and techniques have expanded our knowledge of leaf 3D structure via high-resolution 3D and time-series images, there is a growing need for more in vivo imaging as well as metabolite imaging. However, these advances necessitate further improvement in microscopy sciences to overcome the unique challenges a green leaf poses. In this review, we discuss the available tools, techniques, challenges, and gaps for efficient in vivo leaf 3D imaging, as well as innovations to overcome these difficulties.

Plant Sciences↗
DOE OSTI2021

Identifying Periodic Variable Stars and Eclipsing Binary Systems with Long-term Las Cumbres Observatory Photometric Monitoring of ZTF J0139+5245

We present the results of our search for variable stars using the long-term Las Cumbres Observatory (LCO) monitoring of white dwarf ZTF J0139+5245 with the two 1.0 m telescope nodes located at McDonald Observatory using the Sinistro imaging instrument. In this search, we find 38 variable sources, of which 27 are newly discovered or newly classified (71%) based on comparisons with previously published catalogs, thereby increasing the number of detections in the field of view under consideration by a factor of ≈2.5. We find that the improved photometric precision per exposure due to longer exposure time for LCO images combined with the greater time sampling of LCO photometry enables us to increase the total number of detections in this field of view. Each LCO image covers a field of view of 26' × 26' and observes a region close to the Galactic plane (b = -9.°4) abundant in stars with an average stellar density of ≈8 arcmin{sup -2}. We perform aperture photometry and Fourier analysis on over 2000 stars across 1560 LCO images spanning 537 days to find 28 candidate BY Draconis variables, three candidate eclipsing binaries of type EA, and seven candidate eclipsing binaries of type EW. In assigning preliminary classifications to our detections, we demonstrate the applicability of the Gaia color–magnitude diagram as a powerful classification tool for variable-star studies.

47 OTHER INSTRUMENTATION↗
DOE OSTI2025

Identifying preferential flow from soil moisture time series: Review of methodologies

Abstract Identifying and quantifying preferential flow (PF) through soil—the rapid movement of water through spatially distinct pathways in the subsurface—is vital to understanding how the hydrologic cycle responds to climate, land cover, and anthropogenic changes. In recent decades, methods have been developed that use measured soil moisture time series to identify PF. Because they allow for continuous monitoring and are relatively easy to implement, these methods have become an important tool for recognizing when, where, and under what conditions PF occurs. The methods seek to identify a pattern or quantification that indicates the occurrence of PF. Most commonly, the chosen signature is either (1) a nonsequential response to infiltrated water, in which soil moisture responses do not occur in order of shallowest to deepest, or (2) a velocity criterion, in which newly infiltrated water is detected at depth earlier than is possible by nonpreferential flow processes. Alternative signatures have also been developed that have certain advantages but are less commonly utilized. Choosing among these possible signatures requires attention to their pertinent characteristics, including susceptibility to errors, possible bias toward false negatives or false positives, reliance on subjective judgments, and possible requirements for additional types of data. We review 77 studies that have applied such methods to highlight important information for readers who want to identify PF from soil moisture data and to inform those who aim to develop new methods or improve existing ones. Core Ideas Soil moisture data can be used to identify the occurrence of preferential flow (PF) and its initiating conditions. Various data‐analysis methods to identify PF differ in susceptibility to error, bias, and subjectivity. These methods can utilize vast amounts of data from soil moisture monitoring networks to develop understanding of when, where, and under what conditions PF occurs. Newly developed methods may lead to better accuracy and reliability, and reduce the need for subjective judgments. Plain Language Summary Preferential flow through soil occurs when a large amount of water is suddenly available, as during an intense storm. This type of flow moves rapidly through the soil in distinct narrow pathways rather than moving evenly throughout the body of soil, with major consequences for groundwater resources, ecosystems, spreading of contaminants, and other vital concerns. Methods of detecting preferential flow have been developed that utilize measurements of soil water content made by sensors installed at various depths. This measurement technology has been widely implemented, many locations now having datasets years in length, and various methods have been developed for using these to identify preferential flow. The various methods are based on different features in the soil moisture records and vary in their advantages and shortcomings. In this review, we explain and evaluate these methods, highlighting important information for their implementation to identify preferential flow from soil moisture data and for efforts to develop new methods or improve existing ones.

Nimmo, John R↗
DOE OSTI2021

A k-mer based approach for classifying viruses without taxonomy identifies viral associations in human autism and plant microbiomes

Viruses are an underrepresented taxa in the study and identification of microbiome constituents; however, they play an essential role in health, microbiome regulation, and transfer of genetic material. Only a few thousand viruses have been isolated, sequenced, and assigned a taxonomy, which limits the ability to identify and quantify viruses in the microbiome. Additionally, the vast diversity of viruses represents a challenge for classification, not only in constructing a viral taxonomy, but also in identifying similarities between a virus’ genotype and its phenotype. However, the diversity of viral sequences can be leveraged to classify their sequences in metagenomic and metatranscriptomic samples, even if they do not have a taxonomy. To identify and quantify viruses in transcriptomic and genomic samples, we developed a dynamic programming algorithm for creating a classification tree out of 715,672 metagenome viruses. To create the classification tree, we clustered proportional similarity scores generated from the k-mer profiles of each of the metagenome viruses to create a database of metagenomic viruses. The resulting Kraken2 database of the metagenomic viruses can be found here: https://www.osti.gov/biblio/1615774 and is compatible with Kraken2. We then integrated the viral classification database with databases created with genomes from NCBI for use with ParaKraken (a parallelized version of Kraken provided in Supplemental Zip 1), a metagenomic/transcriptomic classifier. To illustrate the breadth of our utility for classifying metagenome viruses, we analyzed data from a plant metagenome study identifying genotypic and compartment specific differences between two Populus genotypes in three different compartments. We also identified a significant increase in abundance of eight viral sequences in post mortem brains in a human metatranscriptome study comparing Autism Spectrum Disorder patients and controls. We also show the potential accuracy for classifying viruses by utilizing both the JGI and NCBI viral databases to identify the uniqueness of viral sequences. Finally, we validate the accuracy of viral classification with NCBI databases containing viruses with taxonomy to identify pathogenic viruses in known COVID-19 and cassava brown streak virus infection samples. Our method represents the compulsory first step in better understanding the role of viruses in the microbiome by allowing for a more complete identification of sequences without taxonomy. Better classification of viruses will improve identifying associations between viruses and their hosts as well as viruses and other microbiome members. Despite the lack of taxonomy, this database of metagenomic viruses can be used with any tool that utilizes a taxonomy, such as Kraken, for accurate classification of viruses.

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRSDate not supplied

Identifying Emerging Safety Threats Through Topic Modeling in the Aviation Safety Reporting System: A Covid-19 Study

The NASA Aviation Safety Reporting System (ASRS) is a voluntary, confidential aviation safety reporting system. The ASRS receives reports from pilots, air traffic controllers, flight attendants, and others involved in aviation operations. The reports are de-identified and coded by ASRS expert safety analysts, and a short descriptive synopsis is written to describe the safety issue. The de-identified reports are then disseminated to the aviation community in many ways, including via an online database, Safety Alert Bulletins, For Your Information Notices, and the CALLBACK newsletter. In this work, we consider whether we can improve the grouping, linking, and understanding of safety concerns through topic modeling. Specifically, we use topic modeling as a building block to identify emerging safety threats over time. This unsupervised approach, we argue, offers the flexibility to identify new emerging themes in this large dataset by constructing different timelines based on the content similarity of ASRS report narratives. This method's unsupervised nature improves upon related research, which is limited to pre-defined labels and therefore can not fully capture emerging safety threats. We apply our method to all ASRS reports in 2020 to assess if the generated timelines can highlight COVID-19 as it is emerging as a safety threat in incoming ASRS reports. We perform both a quantitative and qualitative evaluation of the automatically constructed timelines. The qualitative evaluation is performed by describing the evolution of top terms in the timelines, generated by our method, which we found explicitly convey the themes of COVID-19. Separately, we use a set of 1,213 COVID-19 reports from 2020 that were manually identified by ASRS analysts to quantitatively evaluate the COVID-19 reports distribution across the timelines. Our results have shown that COVID-19 emergence can be identified using the top terms that were generated by topic modeling. The top terms in topic modeling therefore can serve as a summary alternative to manually inspecting reports. Moreover, leveraging the manually identified COVID-19 reports, we found the manually identified timelines accounted for over 70% of the COVID-19 reports curated by the ASRS analysts, which demonstrates the potential of this approach for facilitating the understanding of safety concerns as they emerge and evolve. This method shows great potential to understand aerospace safety threats and other narrative- driven incident report databases.

ASRS↗