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A Semianalytical Ocean Color Inversion Algorithm with Explicit Water Column Depth and Substrate Reflectance Parameterization

A semianalytical ocean color inversion algorithm was developed for improving retrievals of inherent optical properties (IOPs) in optically shallow waters. In clear, geometrically shallow waters, light reflected off the seafloor can contribute to the water-leaving radiance signal. This can have a confounding effect on ocean color algorithms developed for optically deep waters, leading to an overestimation of IOPs. The algorithm described here, the Shallow Water Inversion Model (SWIM), uses pre-existing knowledge of bathymetry and benthic substrate brightness to account for optically shallow effects. SWIM was incorporated into the NASA Ocean Biology Processing Group's L2GEN code and tested in waters of the Great Barrier Reef, Australia, using the Moderate Resolution Imaging Spectroradiometer (MODIS) Aqua time series (2002-2013). SWIM-derived values of the total non-water absorption coefficient at 443 nm, at(443), the particulate backscattering coefficient at 443 nm, bbp(443), and the diffuse attenuation coefficient at 488 nm, Kd(488), were compared with values derived using the Generalized Inherent Optical Properties algorithm (GIOP) and the Quasi-Analytical Algorithm (QAA). The results indicated that in clear, optically shallow waters SWIM-derived values of at(443), bbp(443), and Kd(443) were realistically lower than values derived using GIOP and QAA, in agreement with radiative transfer modeling. This signified that the benthic reflectance correction was performing as expected. However, in more optically complex waters, SWIM had difficulty converging to a solution, a likely consequence of internal IOP parameterizations. Whilst a comprehensive study of the SWIM algorithm's behavior was conducted, further work is needed to validate the algorithm using in situ data.

Great Barrier Reef↗

Transboundary effects from idealized regional geoengineering

Regional geoengineering, by reflecting sunlight over a very limited spatial domain, might be considered as a means to target specific regional impacts of climate change. One of the obvious concerns raised by such approaches is the extent to which the resulting effects would be detectable well beyond the targeted region (e.g. in neighbouring countries). A few studies have explored this question for targeted regions that are still comparatively large. We consider idealized simulations with increased ocean albedo over relatively small domains; the Gulf of Mexico (0.23% of Earth's surface) and over the Australian Great Barrier Reef (0.07%), both with negligible global radiative forcing. Applied over these very small domains, the only statistically significant non-local changes we find are some limited reduction on summer precipitation in Florida in the Gulf of Mexico case (adjacent to the targeted region). The lack of transboundary effects suggests that governance needs for such targeted interventions are quite distinct from those for more global sunlight reflection.

54 ENVIRONMENTAL SCIENCES↗

Description of Freudenthalidium gen. nov. and Halluxium gen. nov. to Formally Recognize Clades Fr3 and H as Genera in the Family Symbiodiniaceae (Dinophyceae)

The Symbiodiniaceae are a family of marine dinoflagellates known mostly for their endosymbiotic interactions with invertebrates and protists, but facultatively and exclusively free‐living life histories in this family are also evident. A recent systematic revision of the Symbiodiniaceae replaced the clade‐based nomenclature of seven divergent lineages of “ Symbiodinium ” sensu lato with one based on formally described genera. The revised taxonomy was not extended to the whole group because type species to describe a new genus for each of the remaining clades and subclades were lacking. In an effort to characterize benthic habitats of symbiodiniaceans in sediments at Heron Island (Great Barrier Reef, Australia), we isolated >100 monoclonal Symbiodiniaceae cultures. Four of these belonged to Symbiodiniaceae ‘subclade’ Fr3, and three to Clade H, based on nucleotide sequence similarity (ITS2, LSU, cp23S, and mtCOB), representing the first cultures of these taxa. Based on these isolates, we propose two new genera: Freudenthalidium gen. nov. and Halluxium gen. nov., circumscribing Clades Fr3 and H, respectively. Three new species are described: Freudenthalidium heronense , F. endolithicum , and Halluxium pauxillum . Kofoidian tabulations of motile cells confirm previous observations that amphiesmal vesicle arrangements are generally conserved across the family. These descriptions are an important step toward completing the systematic revision of the Symbiodiniaceae. That this contribution was enabled by isolates from an endopsammic habitat highlights the potential of discovering new symbiodiniacean species in the environment, the study of which will lead to a deeper understanding of free‐living versus symbiotic life histories in this ecologically important family of dinoflagellates.

Nitschke, Matthew R.↗

North-Australian tropical seas circulation study

This investigation is intended to fully address the stated objective of the TOPEX/POSEIDON mission (National Aeronautics and Space Administration, 1986). Hence, we intend to use TOPEX/POSEIDON altimetry data to study the large-scale circulation of the Coral Sea Basin and the Arafura Sea and the mass exchange between these and adjoining basins. We will obtain data from two such cruises in 1993 and 1994 and combine them with TOPEX/POSEIDON radar altimetry data to identify interannual and seasonal changes in: (1) the location of the major ocean currents and the South Equatorial Current bifurcation in the Coral Sea; (2) the source region of the South Tropical Counter Current (STCC); and (3) the water exchange between the Coral Sea and the adjoining seas. We will also estimate seasonal and interannual variations in the horizontal transport of mass and heat associated with near-surface geostrophic and wind-driven currents. In addition, the tidal components of the Coral Sea will be studied to provide a correction for altimetry subtidal sea level changes and to develop a regional numerical model for tidal forcing in the Great Barrier Reef (GBR) and Papua New Guinea Reef regions.

Burrage, Derek↗

SWIM: A Semi-Analytical Ocean Color Inversion Algorithm for Optically Shallow Waters

Ocean color remote sensing provides synoptic-scale, near-daily observations of marine inherent optical properties (IOPs). Whilst contemporary ocean color algorithms are known to perform well in deep oceanic waters, they have difficulty operating in optically clear, shallow marine environments where light reflected from the seafloor contributes to the water-leaving radiance. The effect of benthic reflectance in optically shallow waters is known to adversely affect algorithms developed for optically deep waters [1, 2]. Whilst adapted versions of optically deep ocean color algorithms have been applied to optically shallow regions with reasonable success [3], there is presently no approach that directly corrects for bottom reflectance using existing knowledge of bathymetry and benthic albedo.To address the issue of optically shallow waters, we have developed a semi-analytical ocean color inversion algorithm: the Shallow Water Inversion Model (SWIM). SWIM uses existing bathymetry and a derived benthic albedo map to correct for bottom reflectance using the semi-analytical model of Lee et al [4]. The algorithm was incorporated into the NASA Ocean Biology Processing Groups L2GEN program and tested in optically shallow waters of the Great Barrier Reef, Australia. In-lieu of readily available in situ matchup data, we present a comparison between SWIM and two contemporary ocean color algorithms, the Generalized Inherent Optical Property Algorithm (GIOP) and the Quasi-Analytical Algorithm (QAA).

QAA↗

SWIM: A Semi-Analytical Ocean Color Inversion Algorithm for Optically Shallow Waters

In clear shallow waters, light that is transmitted downward through the water column can reflect off the sea floor and thereby influence the water-leaving radiance signal. This effect can confound contemporary ocean color algorithms designed for deep waters where the seafloor has little or no effect on the water-leaving radiance. Thus, inappropriate use of deep water ocean color algorithms in optically shallow regions can lead to inaccurate retrievals of inherent optical properties (IOPs) and therefore have a detrimental impact on IOP-based estimates of marine parameters, including chlorophyll-a and the diffuse attenuation coefficient. In order to improve IOP retrievals in optically shallow regions, a semi-analytical inversion algorithm, the Shallow Water Inversion Model (SWIM), has been developed. Unlike established ocean color algorithms, SWIM considers both the water column depth and the benthic albedo. A radiative transfer study was conducted that demonstrated how SWIM and two contemporary ocean color algorithms, the Generalized Inherent Optical Properties algorithm (GIOP) and Quasi-Analytical Algorithm (QAA), performed in optically deep and shallow scenarios. The results showed that SWIM performed well, whilst both GIOP and QAA showed distinct positive bias in IOP retrievals in optically shallow waters. The SWIM algorithm was also applied to a test region: the Great Barrier Reef, Australia. Using a single test scene and time series data collected by NASA's MODIS-Aqua sensor (2002-2013), a comparison of IOPs retrieved by SWIM, GIOP and QAA was conducted.

shallow waters↗

Spatiotemporal Evolution of Marine Heatwaves Globally

The spatiotemporal evolution of marine heatwaves (MHWs) is explored using a tracking algorithm termed Ocetrac that provides objective characterization of MHW spatiotemporal evolution. Candidate MHW grid points are defined in detrended gridded sea temperature data using a seasonally varying temperature threshold. Identified MHW points are collected into spatially distinct objects using edge detection with weak sensitivity to edge detection and size threshold criteria. These MHW objects are followed in space and time while allowing objects to split and merge. Ocetrac is applied to monthly satellite sea surface temperature data from September 1981 through January 2021. The resulting MHWs are characterized by their intensity, duration, and total area covered. The global analysis shows that MHWs in the Gulf of Maine and Mediterranean Sea evolve within a relatively small region, while major MHWs in the Pacific and Indian Oceans are linked in space and time. The largest and most long lasting MHW using this method lasts for 60 months from November 2013 to October 2018, encompassing previously identified MHW events including those in the Northeast Pacific (2014-2015), the Tasman Sea (2015-2016, 2017-2018), and the Great Barrier Reef (2016).

spatiotemporal↗

Australian tidal currents – assessment of a barotropic model (COMPAS v1.3.0 rev6631) with an unstructured grid

While the variations of tidal range are large and fairly well known across Australia (less than 1 m near Perth but more than 14 m in King Sound), the properties of the tidal currents are not. We describe a new regional model of Australian tides and assess it against a validation dataset comprising tidal height and velocity constituents at 615 tide gauge sites and 95 current meter sites. The model is a barotropic implementation of COMPAS, an unstructured-grid primitive-equation model that is forced at the open boundaries by TPXO9v1. The mean absolute error (MAE) of the modelled M2 height amplitude is 8.8 cm, or 12 % of the 73 cm mean observed amplitude. The MAE of phase (10°), however, is significant, so the M2 mean magnitude of vector error (MMVE, 18.2 cm) is significantly greater. The root sum square over the eight major constituents is 26 % of the observed amplitude. We conclude that while the model has skill at height in all regions, there is definitely room for improvement (especially at some specific locations). For the M2 major axis velocity amplitude, the MAE across the 95 current meter sites, where the observed amplitude ranges from 0.1 to 156 cm s −1 , is 6.9 cm s −1 , or 22 % of the 31.7 cm s −1 observed mean. This nationwide average result is encouraging, but it conceals a very large regional variation. Relative errors of the tidal current amplitudes on the narrow shelves of New South Wales (NSW) and Western Australia exceed 100 %, but tidal currents are weak and negligible there compared to non-tidal currents, so the tidal errors are of little practical significance. Looking nationwide, we show that the model has predictive value for much of the 79 % of Australia's shelf seas where tides are a major component of the total velocity variability. In descending order this includes the Bass Strait, the Kimberley to Arnhem Land, and southern Great Barrier Reef regions. There is limited observational evidence to confirm that the model is also valuable for currents in other regions across northern Australia. We plan to commence publishing “unofficial” tidal current predictions for chosen regions in the near future based on both our COMPAS model and the validation dataset we have assembled.

Tidal currents↗