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All sourcesNASA NTRSDOE OSTI
DOE OSTI2026

Evaluation of Howard A. Hanson Dam Juvenile Fish Passage and Survival Study Live Fish Injury Assessment, Sensor Fish, and BioPA Modeling Tasks

The live fish injury assessment, Sensor Fish, and BioPA modeling study tasks were conducted by researchers from Pacific Northwest National Laboratory (PNNL). The four tasks were part of the larger Evaluation of Howard A. Hanson Dam (HAHD) Juvenile Fish Passage and Survival study, which had six total tasks. To achieve study objectives for each of the four tasks, field work occurred at Green Peter Dam (GPR) to evaluate the highest elevation steep slope bypass pipe, at HAHD to evaluate baseline conditions of the horseshoe tunnel, and at PNNL’s Aquatic Research Laboratory (ARL) to evaluate simulated dam passage conditions (i.e., shear forces and collision). Each of these evaluations utilized live fish injury assessment, Sensor Fish, and BioPA modeling. Live fish injury assessment and survival (tagged with and without balloon or passive integrated transponder [PIT] tags) was correlated with Sensor Fish to determine thresholds. The CFD analyses were then performed, and the computed values were compared to the corresponding measured values of Sensor Fish data. The results of the overall injury and survival of fish was also used in the validation of the CFD modeling method. Collectively, the results will aid in future modeling of fish passage at HAHD. Results from these tasks can be used by biologists, engineers, resource managers, and regional decision-makers to inform baseline conditions under current operations and the engineering design of the new FPF at HAHD. This draft report contains initial data and results from the four tasks. Table 8 1, Table 8 2, and Table 8 3, and Figure 8 1, Figure 8 2, and Figure 8 3 depict the CFD modeling findings for the GPR steep slope bypass, HAHD horseshoe tunnel, and laboratory testing. Table 8 4, Table 8 5, and Table 8 6 depict the Sensor Fish findings for the GPR steep slope bypass and HAHD horseshoe tunnel testing. The Mv values observed in the HAHD were significantly lower compared to the laboratory experiments conducted at PNNL. Currently, investigations are underway to understand the reasons for this disparity and to establish an appropriate threshold value for Mv. Survival predictions presented in the tables below should be considered preliminary and should not be used until further analyses and adjustments are completed. The next steps for modeling will include the flow regime, (i.e., density of flow regimes due to water and air mixing ) to continue to improve on the threshold value for Mv.

13 HYDRO ENERGY↗
DOE OSTI2019

Does River Restoration Increase Fish Abundance and Survival or Concentrate Fish? The Effects of Project Scale, Location, and Fish Life History

Abstract Despite billions of dollars spent on various river restoration techniques, we still find ourselves debating whether habitat restoration increases fish abundance or concentrates fish. Based on the available literature, I discuss three important questions related specifically to the restoration of salmonid habitat: (1) “Does river restoration increase fish abundance or concentrate fish?”; (2) “Does river restoration increase fish survival or increase abundance?”; and (3) “Does the size or amount of river restoration influence fish response?” First, there is scant evidence to support the contention that river restoration leads to the concentration of fish at restoration projects. Second, the literature suggests that river restoration may lead to increased survival, increased abundance, or both. Third, recent studies have found little relationship between restoration project length and physical or biological response. The scientific literature does suggest that fish response to restoration varies greatly depending on the watershed template, location, and characteristics of the habitat restoration, and the life history of and limiting factors for a species. Thus, adequately determining whether changes in fish abundance observed in a restored area are due to increased movement, survival, or the amount of restoration will require detailed monitoring of these factors simultaneously.

Roni, Philip↗
DOE OSTI2015

Evaluation of Behavior and Survival of Fish Exposed to an Axial-Flow Hydrokinetic Turbine

Abstract Previous studies have evaluated fish injury and mortality at hydrokinetic (HK) turbines, but because these studies focused on the impacts of these turbines in situ they were unable to evaluate fish responses to controlled environmental characteristics (e.g., current velocity and light or dark conditions). In this study, we used juvenile hybrid Striped Bass (HSB; Striped Bass Morone saxatilis × White Bass M. chrysops; N = 620), Rainbow Trout Oncorhynchus mykiss (N = 3,719), and White Sturgeon Acipenser transmontanus (N = 294) in a series of laboratory experiments to (1) evaluate the ability of fish to avoid entrainment through an axial-flow HK turbine, (2) evaluate fish injury and survival associated with turbine entrainment, and (3) compare the effects of different HK turbines on fish. We found that the probability of turbine entrainment was species dependent and highest for HSB. Across species, current velocity influenced entrainment probability. Among entrained fish, observed survival rates were generally >0.95. The probability of injury for surviving entrained fish only differed from that for nonentrained fish for Rainbow Trout and in general was not >0.20. The probability of injury following entrainment was greater only for HSB, although there were no differences in injury rates between fish that were turbine entrained and those that were not, suggesting that injuries were not turbine related. Taking turbine entrainment, survival, and injury estimates together allowed us to estimate the probability of a randomly selected fish in a population proximate to an HK turbine surviving passage or remaining uninjured after passage. For species and current velocities for which there was a significant effect due to entrainment, we estimated, for instance, that HSB had a survival probability of 0.95 and that Rainbow Trout and White Sturgeon had a >0.99 probability of survival. Similarly, by combining these estimates with those from previous studies, we derived total passage survival probabilities >0.90 but generally approaching 1.00 across different HK turbine types, fish species, and fish lengths. Received May 14, 2014; accepted October 23, 2014

Amaral, Stephen V.↗
DOE OSTI2019

An experimental study on fish attraction using a fish barge model

Fish-collection and transportation systems (FCTS) have been introduced and applied as innovative approaches to facilitate fish passage in China for several years. The efficacy of FCTSs depends directly on the efficiency of the fish-guidance measures employed. In this study, the effects of three parameters—water flow, artificial lighting, and bubble curtains—on the attraction of mosquitofish ( Gambusia affinis ) was investigated using a fish barge model in a large pond. The experiment was conducted in two steps. First, a univariate experiment was performed, and then, a multivariate experiment using an orthogonal design was performed. Four different colors of light were tested: 1) yellow light (570 nm), 2) blue light (460 nm), 3) warm white light (3000 K), and 4) a weak light control group, whose illuminance belongs to the interval 0.001 lx to 0.3 lx. Supplementing water flow within the barge decreased the number of attracted fish (i.e., the number of the targeted fish species that appeared within 1.5m of the barge model’s entrance) but increased the fish-collection ratio of the fish-collecting platform (i.e., the ratio of the number of attracted fish to the number of collected fish). Warm white light was shown to be significantly effective in attracting fish, while no obvious effect was observed in terms of the fish collection ratio. The bubble curtain exhibited excellent fish-attraction efficacies, but also had no significant effect on the attraction and collection efficacy of the fish-collecting platform. During the day, the optimal combination for fish attraction was to have no water flow with a bubble curtain, while the optimal combination for fish collection was to have no water flow and no bubble curtain. During the night, the optimal combination for fish attraction was to have no water flow, no bubble curtain, and a warm white light, while the optimal combination for fish collection was to have water flow, no bubble curtain, and a weak light. This study tested the combined efficacies of various fish-guidance measures on a fish-collecting platform, thus providing experimental support for optimizing various fish-attraction measures and the application of these measures in FCTS projects.

Lin, Chenyu↗
DOE OSTI2020

Replacing fish oil and astaxanthin by microalgal sources produced different metabolic responses in juvenile rainbow trout fed 2 types of practical diets

Dietary fish oil supplementation provides n-3 long-chained polyunsaturated fatty acids for supporting fish growth and metabolism and enriching fillet with eicosapentaenoic acid (EPA; 20:5n-3) and docosahexaenoic acid (DHA; c22:6n-3). Two experiments were performed as a 3 × 2 factorial arrangement of dietary treatments for 16 wk to determine effects and mechanisms of replacing 0%, 50%, and 100% fish oil with DHA-rich microalgae in combination with synthetic vs. microalgal source of astaxanthin in plant protein meal (PM)- or fishmeal (FM)- based diets for juvenile rainbow trout (Oncorhynchus mykiss). Fish (22 ± 0.26 g) were stocked at 17/tank and 3 tanks/diet. The 100% fish oil replacement impaired (P < 0.0001) growth performance, dietary protein and energy utilization, body indices, and tissue accumulation of DHA and EPA in both diet series. Here, the impairments were associated (P < 0.05) with upregulation of hepatic gene expression related to growth (ghr1and igf1) and biosynthesis of DHA and EPA (fads6 and evol5) that was more dramatic in the FM than PM diet-fed fish, and more pronounced on tissue EPA than DHA concentrations. The source of astaxanthin exerted interaction effects with the fish oil replacement on several measures including muscle total cholesterol concentrations. In conclusion, replacing fish oil by the DHA-rich microalgae produced more negative metabolic responses than the substitution of synthetic astaxanthin by the microalgal source in juvenile rainbow trout fed 2 types of practical diets.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2018

The limiting layer of fish scales: structure and properties

Fish scales serve as a flexible natural armor that have received increasing attention across the materials community. Most efforts in this area have focused on the composite structure of the predominately organic elasmodine, and limited work addresses the highly mineralized external portion known as the Limiting Layer (LL). This coating serves as the first barrier to external threats and plays an important role in resisting puncture. In this investigation the structure, composition and mechanical behavior of the LL were explored for three different fish, including the arapaima (Arapaima gigas), the tarpon (Megalops atlanticus) and the carp (Cyprinus carpio). The scales of these three fish have received the most attention within the materials community. Features of the LL were evaluated with respect to anatomical position to distinguish site-specific functional differences. Results show that there are significant differences in the surface morphology of the LL from posterior and anterior regions in the scales, and between the three fish species. The calcium to phosphorus ratio and the mineral to collagen ratios of the LL are not equivalent among the three fish. Results from nanoindentation showed that the LL of tarpon scales is the hardest, followed by the carp and the arapaima and the differences in hardness are related to the apatite structure, possibly induced by the growth rate and environment of each fish.

Arola, Dwayne D.↗
DOE OSTI2023

Balloon Tag Manufacturing Technique for Sensor Fish and Live Fish Recovery

Fish may experience injuries and mortality when they pass through hydraulic conveyances at hydropower dams, even if these conveyances are designed to be fish-friendly, such as downstream bypass systems, modified spillways and turbines. The main methods used to study fish passage conditions in hydraulic structures involve direct, in situ testing using Sensor Fish technology and live fish. Sensor Fish data helps identify physical stressors and their locations in the fish passage environment, while live fish are assessed for injuries and mortality. Balloon tags, which are self-inflating balloons attached externally to Sensor Fish and live fish, aid in their recovery after passing through hydraulic structures. This article focuses on the development of balloon tags with varying numbers of dissolvable, vegetable-based capsules containing a mixture of oxalic acid, sodium bicarbonate powders, and water at two different temperatures. Our research determined that balloon tags with three capsules, injected with 5 mL of water at 18.3 °C, consistently achieved the desired balloon volume. These tags had a mean inflation volume of 114 cm 3 with a standard deviation of 1.2 cm 3 . Among the balloon tags injected with water at 18.3 °C, it was observed that the two-capsule balloon tags took the longest time to reach full inflation. In addition, the four-capsule balloon tags demonstrated a faster inflation start time, while the three-capsule balloon tags demonstrated a faster deflation start time. Overall, this approach proves to be effective for validating the performance of new technologies, improving turbine design, and making operational decisions to enhance fish passage conditions. Importantly, it serves as a valuable tool for research and field evaluations, aiding in the refinement of both the design and operation of hydraulic structures.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2025

HydroFish: freshwater fish co-occurrence with hydropower plants and non-powered dams in conterminous United States sub-basins

The HydroFish dataset lists all existing hydropower plants (EHAs) and non-powered dams (NPDs; ≥ 0.001 MW potential nominal capacity), delineates the hydrologic sub-basins in which they are situated, and then lists all freshwater fish species reported to occur in those sub-basins. This dataset was compiled using the HydroBio dataset (https://hydrosource.ornl.gov/data/datasets/hydrobio/) and contains 24 total variables that describe hydrologic sub-basins, each unique EHA (plant ID and name, geographic coordinates, permit type, capacity, etc.) and NPD (ID value, known names, geographic coordinates, and estimated potential nominal capacity), and freshwater fish species in the sub-basin (common and scientific name, origin, and migratory and threat status). The HydroBio dataset was built using Oak Ridge National Laboratory’s Existing Hydropower Assets Dataset (2024 version) and Non-powered Dam Technical Potential Dataset (2024 version), and NatureServe’s fish species distribution dataset (2023 version). The dataset also contains summary variables that report the unique number of EHAs, NPDs, and freshwater fish species per sub-basin. The HydroFish dataset contains two unique data files: 1) a .csv metadata file describing the dataset variables, and 2) a .csv data file containing the actual dataset. Note that there may be many rows per unique existing hydropower plant or non-powered dam given that distinct species are listed per existing plant or NPD per sub-basin. The dataset is downloadable as a zip file containing the metadata and dataset files.

Bozeman, Bryan [Oak Ridge National Laboratory (ORN↗
DOE OSTI2016

Sensor Fish: an autonomous sensor package for characterizing complex flow fields and fish passage

Fish passing through dams or other hydraulic structures may be injured or killed despite advances in turbine design, project operations, and other fish bypass systems. The Sensor Fish (SF) device is an autonomous sensor package that characterizes the physical conditions and stressors to which fish are exposed during passage through hydro facilities. It was designed to move passively as a neutrally buoyant object through severe hydraulic environments, while collecting high-resolution sensor data. Since its first generation1, the SF device has been successfully deployed in many fish passage studies and has evolved to be a major tool for characterizing fish passage conditions during fish passage in the Columbia River Basin. To better accelerate hydropower development, the U.S. Department of Energy Water Power Program provided funding to develop a new generation (Gen 2 SF) to incorporate more capabilities and accommodate a wider range of users over a broader range of turbine designs and operating environments. The Gen 2 SF (Figure 1) is approximately the size and density of a yearling salmon smolt and is nearly neutrally buoyant. It contains three-dimensional (3D) rotation sensors, 3D linear acceleration sensors, a pressure sensor, a temperature sensor, a 3D orientation sensor, a radiofrequency (RF) transmitter, and a recovery module2. A low-power microcontroller collects data from the sensors and stores up to 5 min of data on internal flash memory at a sampling frequency of 2048 Hz. The recovery module makes the SF positively buoyant after a pre-programmed period of time, causing it to float to the surface for recovery.

Sensor Fish↗
DOE OSTI2025

Where do the fish go in winter? A year of observing seasonal changes in Sequim Bay’s nearshore fish community

The use of environmental DNA (eDNA) sampling has been proposed as a complementary method to monitor fish species in marine environments. eDNA offers a non-invasive, cost-effective, and scalable way to detect aquatic species. It is appealing in environments where traditional methods are limited by access or visibility, especially in complex or sensitive habitats such as tidal channels and other marine energy sites. Before eDNA can be fully relied upon, we must verify its accuracy against established methods, like underwater photography. In this study, we collected eDNA samples and concurrently deployed a 360-degree camera near the floating dock of PNNL-Sequim in the tidal channel of Sequim Bay once a month for twelve consecutive months. During deployments, the camera remained on the seafloor for several hours overlapping slack tide and captured time-lapse photographs at ten second intervals. Counts and identifications of fish species observed in the images were used to calculate monthly Shannon diversity and Pielou evenness indices. These values were compared across the months using a Kruskal-Wallis test paired with a Conover-Iman post-hoc test. Cliff’s Delta was also calculated to quantify the effect size of the monthly differences. No fish were observed from December through April, likely due to seasonal behavior changes within the local fish community. Fish returned to the shoreline in May, with the greatest diversity and evenness recorded in September. These findings reveal substantial seasonal variation in nearshore fish communities. Many monthly comparisons were found to contain statistically significant differences within the diversity and evenness, and even more were found to have large effect sizes, signifying large ecological changes throughout the seasons. The absence of fish observed during the winter months is a key outcome of this survey that will hopefully be reflected in the eDNA results still to come, which would help validate the eDNA approach.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2018

Irradiation of rainbow trout at early life stages results in a proteomic legacy in adult gills. Part A; proteomic responses in the irradiated fish and in non-irradiated bystander fish

Highlights: • The effects of early life irradiation on the trout gill proteome was investigated. • The bystander effect proteomic responses in non-irradiated fish were investigated. • Proteomic responses of embryonic irradiation were anti-tumorigenic or anti-oxidant. • Proteomic responses of larval or first feeder irradiation were “dual function”. • Bystander effect proteomic responses were anti-tumorigenic or protective. Exposure to a single 0.5 Gy X-ray dose of eggs at 48 h after fertilisation (48 h egg), eyed eggs, yolk sac larvae (YSL) and first feeders induces a legacy effect in adult rainbow trout. This includes the transmission of a bystander effect to non-irradiated adult trout which had swam with the irradiated fish. The aim of this study was to investigate this legacy by analysing the gill proteome of these irradiated and bystander fish. Irradiation at all of the early life stages resulted in changes to proteins which play a key role in development but are also known to be anti-tumorigenic and anti-oxidant: upregulation of haemoglobin subunit beta (48 h egg), haemoglobin, serum albumin 1 precursor (eyed eggs), clathrin heavy chain 1 isoform X10 (eyed eggs and first feeders), and actin-related protein 2/3 complex subunit 4 (first feeders), downregulation of pyruvate dehydrogenase, histone 1 (48 h egg), triosephosphate isomerase (TPI), collagen alpha-1(1) chain like proteins (YSL), pyruvate kinase PKM-like protein (YSL and first feeders), ubiquitin-40S ribosomal proteins S27 and eukaryotic translation initiation factor 4 A isoform 1B (first feeders). However irradiation of YSL and first feeders (post hatching early life stages) also induced proteomic changes which have a complex relationship with tumorigenesis or cancer progression; downregulation of alpha-1-antiprotease-like protein precursor, vigilin isoform X2 and nucleoside diphosphate kinase (YSL) and upregulation of hyperosmotic glycine rich protein (first feeders). In bystander fish some proteomic changes were similar to those induced by irradiation: upregulation of haemoglobin subunit beta (48 h egg), haemoglobin (eyed eggs), actin-related protein 2/3 complex subunit 4, hyperosmotic glycine rich protein (first feeders), and downregulation of alpha-1-antiprotease-like protein, vigilin isoform X2, nucleoside diphosphate kinase (YSL), pyruvate kinase PKM-like protein and ubiquitin-40S ribosomal protein S27a-like (first feeders). Other proteomic changes were unique to bystander fish; downregulation of TPI, ubiquitin-40S ribosomal protein S2 (eyed egg), cofilin-2, cold-inducible RNA-binding protein B-like isoform X3 (YSL) and superoxide dismutase (first feeder), and upregulation of haemoglobin subunit alpha, collagen 1a1 precursor, apolipoprotein A-1-1 and A-1–2 precursor (first feeders). These bystander effect proteomic changes have been shown to be overwhelmingly anti-tumorigenic or protective of the fish gill.

63 RADIATION, THERMAL, AND OTHER ENVIRON. POLLUTAN↗
NASA NTRS1971

US fishing industry participation in NASA's earth resources survey program: Communications between NASA and the US fishing industry

A study to evaluate the applications of remote sensing in commercial fishing is reported, and the basis for effective communications between NASA and the U.S. fishing industry are established. Detailed information is presented in the following areas: organization of the fishing complex and communication levels within and between the components; organization of the fishing industry and the communications within and between both selected fisheries and various industry groups; relationships and communications between federal, state, and local government agencies and the fishing industry; relationships and communications between international and regional fisheries commissions; and intergovernmental agency relationships relevant to the fishing industry. It will be necessary to educate those individuals having access to the techniques and resultant data, and channels for distribution of the information to selected fisheries are recommended. Procedures for feedback information loops are also established.

Maughan, P. M.↗
DOE OSTI2017

Completeness and coverage of open-access freshwater fish distribution data in the United States

Aim: Primary biodiversity data constitute observations of particular species at given points in space and time. Open-access databases provide unprecedented access to these data, but their utility depends on how complete species inventories are at a given surveying resolution and how uniformly distributed surveys are in space and time. Our aim was to characterize the completeness of freshwater fish data across spatial scales and among habitat types (lotic stream reaches and lentic waterbodies), and assess coverage bias in space and time. Location: Freshwater habitats of the contiguous United States. Methods: We compiled fish occurrence records from the Global Biodiversity Information Facility (GBIF), the Multi-state Aquatic Resources Information Server (MARIS), and three federally-administered surveys (EMAP, NAQWA, NRS). Next, we evaluated survey completeness across seven spatial resolutions representing nested stream catchments, and separately for lotic and lentic habitats. Lastly, we tested for bias in survey coverage along environmental and temporal gradients for each habitat type. Results: A total of 39,855,157 records representing 1925 species were available from 1800 to 2014. The percent of catchments surveyed increased as spatial resolution decreased while the density of occurrence records within surveyed catchments decreased. Species richness also increased with catchment size consistent with putative species–area relationships. Occurrence records were distributed among 72,114 lotic reaches and 3,325 lentic waterbodies throughout the contiguous US. Seven percent (N=5,055) of surveyed lotic reaches and 23% (N=771) of surveyed lentic waterbodies were well-surveyed based on the most conservative thresholds for two completeness indices. Most well-surveyed lotic reaches (95%) and undammed lentic waterbodies (97%) were completed since 1980, and most were surveyed during only one 20-year time interval (83% and 56% for lotic and lentic waterbodies, respectively). Coverage analyses indicated that contemporary and future climates corresponding to regions along the west coast and gulf coast are the most under-represented for both lotic and lentic habitats. Small lentic waterbodies (surface area < 0.1 km2) are also under-represented. Main Conclusions: Contemporary surveys of lotic reaches and, to a lesser extent, lentic waterbodies are plentiful and generally representative of climatic and landscape characteristics. Data compilation efforts should focus on adding historical data to public repositories. Clustering of well-surveyed waterbodies in MARIS-participating states highlights the value of state-agency data and demonstrates the need for dissemination of these data by more state agencies.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2019

Over or under? Autonomous Sensor Fish reveals why overshot weirs may be safer than undershot weirs for fish passage

Many riverine fish species disperse downstream as eggs, juveniles, or adults, which can expose them to injury and death at hydro-structures. Low-head weirs are one example of a structure that can kill fish, and this impact has been shown to be substantially higher for undershot weirs when compared to overshot weirs. In this study, autonomous sensor devices were released at an overshot and undershot weir under similar discharges to assess what stressors maybe contributing to differences in the survival rates of fish. Although the undershot weir was more likely to expose fish to rapid decompression, the intensity of decompression was mild and it is more likely that higher levels of fluid shear at the undershot are more damaging to early life stage and small-bodied fish. Both weirs showed potential for strike, but this could be managed through improvements in design.

Pflugrath, Brett D.↗