The CLAS12 software framework and event reconstruction
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46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
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Neutrino interaction vertex reconstruction in DUNE with Pandora deep learning
The Pandora Software Development Kit and algorithm libraries perform reconstruction of neutrino interactions in liquid argon time projection chamber detectors. Pandora is the primary event reconstruction software used at the Deep Underground Neutrino Experiment, which will operate four large-scale liquid argon time projection chambers at the far detector site in South Dakota, producing high-resolution images of charged particles emerging from neutrino interactions. While these high-resolution images provide excellent opportunities for physics, the complex topologies require sophisticated pattern recognition capabilities to interpret signals from the detectors as physically meaningful objects that form the inputs to physics analyses. A critical component is the identification of the neutrino interaction vertex. Subsequent reconstruction algorithms use this location to identify the individual primary particles and ensure they each result in a separate reconstructed particle. A new vertex-finding procedure described in this article integrates a U-ResNet neural network performing hit-level classification into the multi-algorithm approach used by Pandora to identify the neutrino interaction vertex. The machine learning solution is seamlessly integrated into a chain of pattern-recognition algorithms. The technique substantially outperforms the previous BDT-based solution, with a more than 20% increase in the efficiency of sub-1 cm vertex reconstruction across all neutrino flavours.
72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
Reconstruction of interactions in the ProtoDUNE-SP detector with Pandora
The Pandora Software Development Kit and algorithm libraries provide pattern-recognition logic essential to the reconstruction of particle interactions in liquid argon time projection chamber detectors. Pandora is the primary event reconstruction software used at ProtoDUNE-SP, a prototype for the Deep Underground Neutrino Experiment far detector. ProtoDUNE-SP, located at CERN, is exposed to a charged-particle test beam. This paper gives an overview of the Pandora reconstruction algorithms and how they have been tailored for use at ProtoDUNE-SP. In complex events with numerous cosmic-ray and beam background particles, the simulated reconstruction and identification efficiency for triggered test-beam particles is above 80% for the majority of particle type and beam momentum combinations. Specifically, simulated 1 GeV/c charged pions and protons are correctly reconstructed and identified with efficiencies of 86.1$\pm 0.6$% and 84.1$\pm 0.6$%, respectively. The efficiencies measured for test-beam data are shown to be within 5% of those predicted by the simulation.
43 PARTICLE ACCELERATORS↗
Double-differential Measurements of Mesonless Charged-current Muon Neutrino Interactions on Argon with Final-State Protons using the MicroBooNE Detector
This note reports the first double-differential measurements of charged-current $ν_µ$ scattering on argon leading to final states containing zero mesons and one or more protons. This event topology (hereafter abbreviated as CC0$πNp$) is the most common at the neutrino energies typically produced by the Fermilab Booster Neutrino Beam. A detailed understanding of neutrino-argon scattering in the CC0$πNp$ channel is therefore crucial for the success of the precision neutrino oscillation analyses planned for the Short-Baseline Neutrino (SBN) program. This remains true for the upcoming Deep Underground Neutrino Experiment (DUNE), but the higher mean neutrino energy used there will ensure that more inelastic reaction modes, such as single pion production, will also play a major role. The analysis described in this note builds on a previous MicroBooNE study of the CC0$πNp$ channel which obtained the first single-differential cross-section measurements on an argon target. Since that foundational work, significant improvements have been made to MicroBooNE’s simulation software, event reconstruction algorithms, and procedure for calculating systematic uncertainties. When combined with a larger dataset (corresponding to a beam exposure of 6.79 × 10 20 protons-on-target versus 1.60 × 10 20 in Ref. [3]), these enhancements allow the important CC0$πNp$ channel to be studied in more detail. This note begins with a description of the data and simulation samples used as input to the analysis. Section 3 then defines the CC0$πNp$ signal event topology, and Section 4 describes a set of selection criteria designed to identify these events in MicroBooNE data. Binning schemes are then defined in Section 5 for two double-differential measurements of event rates. The first of these considers the momentum and scattering cosine of the outgoing muon, while the second reports the same observables for the leading proton, i.e., the final-state proton with the largest momentum. After a discussion of systematic uncertainties in Section 6, the note concludes by comparing the predictions of MicroBooNE Monte Carlo (MC) simulations to the measured double-differential distributions. These results will form the basis for a future extraction of flux-averaged double-differential CC0$πNp$ cross sections that will be immediately comparable to the theoretical predictions of multiple neutrino event generators. The selection described herein may also be used to study various other observables in CC0$πNp$ events, including those which are sensitive to correlations between leptonic and hadronic kinematics in the final state.
72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
Implementation of ACTS into sPHENIX Track Reconstruction
Abstract sPHENIX is a high energy nuclear physics experiment under construction at the Relativistic Heavy Ion Collider at Brookhaven National Laboratory (BNL). The primary physics goals of sPHENIX are to study the quark-gluon-plasma, as well as the partonic structure of protons and nuclei, by measuring jets, their substructure, and heavy flavor hadrons in $$p$$ p $$+$$ + $$p$$ p , p + Au, and Au + Au collisions. sPHENIX will collect approximately 300 PB of data over three run periods, to be analyzed using available computing resources at BNL; thus, performing track reconstruction in a timely manner is a challenge due to the high occupancy of heavy ion collision events. The sPHENIX experiment has recently implemented the A Common Tracking Software (ACTS) track reconstruction toolkit with the goal of reconstructing tracks with high efficiency and within a computational budget of 5 s per minimum bias event. This paper reports the performance status of ACTS as the default track fitting tool within sPHENIX, including discussion of the first implementation of a time projection chamber geometry within ACTS.
97 MATHEMATICS AND COMPUTING↗
Experimental Neutrino Physics Research with Liquid Argon TPCs (Final Technical Report)
In this report, we present the accomplishments, products, impact, and outcomes of the project funded by the DOE award DE-SC0024095. The research accomplishments are making important contributions to achieving the physics goals, demonstrating the robustness and potential of software-level event reconstruction algorithms, and ensuring high-quality detector operation for relevant US accelerator neutrino experiments using liquid argon time projection chamber technology.
72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
Simulations of Events for the LUX-ZEPLIN (LZ) Dark Matter Experiment
The LUX-ZEPLIN dark matter search aims to achieve a sensitivity to the WIMP-nucleon spin-independent cross-section down to (1–2) ×10−12 pb at a WIMP mass of 40 GeV/ c 2 . This paper describes the simulations framework that, along with radioactivity measurements, was used to support this projection, and also to provide mock data for validating reconstruction and analysis software. Of particular note are the event generators, which allow us to model the background radiation, and the detector response physics used in the production of raw signals, which can be converted into digitized waveforms similar to data from the operational detector. Inclusion of the detector response allows us to process simulated data using the same analysis routines as developed to process the experimental data.
46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
A Common Tracking Software Project
Abstract The reconstruction of the trajectories of charged particles, or track reconstruction, is a key computational challenge for particle and nuclear physics experiments. While the tuning of track reconstruction algorithms can depend strongly on details of the detector geometry, the algorithms currently in use by experiments share many common features. At the same time, the intense environment of the High-Luminosity LHC accelerator and other future experiments is expected to put even greater computational stress on track reconstruction software, motivating the development of more performant algorithms. We present here A Common Tracking Software (ACTS) toolkit, which draws on the experience with track reconstruction algorithms in the ATLAS experiment and presents them in an experiment-independent and framework-independent toolkit. It provides a set of high-level track reconstruction tools which are agnostic to the details of the detection technologies and magnetic field configuration and tested for strict thread-safety to support multi-threaded event processing. We discuss the conceptual design and technical implementation of ACTS, selected applications and performance of ACTS, and the lessons learned.
97 MATHEMATICS AND COMPUTING↗
Track vs Shower Discrimination in the Event Reconstruction of the ICARUS Experiment
The ICARUS collaboration has employed the 760-ton T600 liquid argon TPC detector in a successful three-year physics run at the underground LNGS laboratory, performing a sensitive search for LSND-like anomalous appearance in the CERN Neutrino to Gran Sasso beam, which contributed to the constraints on the allowed neutrino oscillation parameters to a narrow region around 1 eV. After a significant overhaul at CERN, the T600 detector has been installed at Fermilab. The detector commissioning phase lasted until June 2022, then ICARUS moved to data taking for neutrino oscillation physics collecting events from the Booster Neutrino Beam (BNB) and the Neutrinos at the Main Injector (NuMI) beam off-axis. The initial experiment goals are to either confirm or refute the claim by Neutrino-4 short-baseline reactor experiment, perform measurements of neutrino cross sections with the NuMI beam and several Beyond Standard Model searches. Then, ICARUS will jointly search for evidence of sterile neutrinos with the Short-Baseline Near Detector (SBND). In this contribution, we discuss recent changes to the standard TPC event reconstruction that uses Pandora, a pattern recognition software common to liquid argon-based detectors. In particular, we performed a new training of the Boosted Decision Tree (BDT) employed to separate track-like and shower-like reconstructed particles using Monte Carlo simulations of neutrino events from BNB in ICARUS. We compare the discrimination capabilities of the old and new BDT training and discuss further improvements of this algorithm.
43 PARTICLE ACCELERATORS↗
Full event interpretation with machine-learning-based particle-flow reconstruction in the CMS detector
The particle-flow (PF) algorithm constructs a global description of each particle collision by producing a comprehensive list of final-state particles, and is central to event reconstruction in the CMS experiment at the CERN LHC. The existing PF implementation relies on physics-motivated heuristics and assumptions that can be replaced by machine-learning (ML) models trained directly on simulated data and naturally suited to modern graphics processing units (GPUs). A state-of-the-art ML-based PF (MLPF) reconstruction algorithm, implemented within the CMS software framework, is presented. The MLPF algorithm performs a learnable full-event reconstruction on GPUs, generalizes across detector conditions and collision energies, and replaces multiple modular reconstruction steps with a single unified model. Physics performance comparable to standard PF reconstruction is achieved in both simulation and data, with improved jet energy resolution and inference time. In simulated top quark-antiquark events under LHC Run-3 (2023-2024) conditions, the jet energy resolution improves by 10-20% for jets with transverse momentum between 30-100 GeV. Inference time is evaluated using simulated multijet events, with a median of $20\,\hbox {ms}$ per event on an Nvidia L4 GPU, compared to approximately $110\,\hbox {ms}$ for the standard CMS PF reconstruction.
Hayrapetyan, Aram [Yerevan Phys. Inst.]↗
J/Psi Photoproduction Near Threshold With CLAS12
The structure of the proton is comprised of quarks and a sea of gluons. A mechanism that can extract the characteristics of the hidden-color correlations of the nuclear wavefunction is the production of charm near threshold. Due to the fact that momentum transfer is large near threshold in the production of J/ψ , all three valence quarks must act coherently to ex- change energy for the reaction to occur. Models have been developed to predict the nature of J/ψ photoproduction at these specific energies. These include production mechanisms with the two-gluon and three-gluon exchanges. The transferred momentum dependence of the differential cross sections are sensitive to the gluonic form factors, which describe the distribution of color charge in the proton. The CLAS12 detector is capable of measuring J/ψ photoproduction at the energy range close to the threshold. Work showcased in this dissertation encompasses the preparation of the CLAS12 experiments, including the optimization of tracking reconstruction through the study of the Torus magnetic field. In terms of software, contributions were made to the CLAS12 Event Builder, a key stage of reconstruction where event-by-event information is summarized for efficient data analysis. After the run periods were successfully completed, analysis of the RG-A data commenced and an analysis framework was developed to measure the differential and total cross sections of J/ψ photoproduction in Hall B.
Newton, Joseph↗
The Heavy Photon Search (HPS) Software Environment
The Heavy Photon Search (HPS) is an experiment at the Thomas Jefferson National Accelerator Facility (JLab) designed to search for a hidden sector photon (A’) in fixed-target electro-production. It uses a silicon microstrip tracking and vertexing detector placed inside a dipole magnet to measure charged particle trajectories and a fast lead-tungstate crystal calorimeter located just downstream of the magnet to provide a trigger and to identify electromagnetic showers. The HPS experiment uses both invariant mass and secondary vertex signatures to search for the A’. The experimental collaboration is small and quite heterogeneous: it is composed of members of the nuclear physics as well as particle physics communities, from universities and national labs from around the US and Europe. Enabling such a disparate group to concentrate on the physics aspects of the experiment required that the software be easy to install and use, and having such limited manpower meant that existing solutions had to be exploited. HPS has successfully completed two engineering runs and completed its first physics run in the summer of 2019. We begin with an overview of the physics goals of the experiment followed by a short description of the detector design. We then describe the software tools used to design the detector layout and simulate the expected detector performance. Event reconstruction involving track, cluster and vertex finding and fitting for both simulated and real data was, to first order, adopted from existing software originally developed for Linear Collider studies. Bringing it all together into a cohesive whole involved the use of multiple software solutions with common interfaces.
Graf, Norman↗
Charged particle track reconstruction with SπRIT Time Projection Chamber
In this work, we present a software framework, SπRITROOT, which is capable of track reconstruction and analysis of heavy-ion collision events recorded with the SRIT time projection chamber. The track-fitting toolkit GENFIT and the vertex reconstruction toolkit RAVE are applied to a box-type detector system. A pattern recognition algorithm which performs helix track finding and handles overlapping pulses is described. The performance of the software is investigated using experimental data obtained at the Radioactive Isotope Beam Facility (RIBF) at RIKEN. This work focuses on data from 132 Sn + 124 Sn collision events with beam energy of 270 AMeV. Particle identification is established using < dE/dx >and magnetic rigidity, with pions, hydrogen isotopes, and helium isotopes.
46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
Simulated Detector Performance at the Muon Collider
In this paper we report on the current status of studies on the expected performance for a detector designed to operate in a muon collider environment. Beam-induced backgrounds (BIB) represent the main challenge in the design of the detector and the event reconstruction algorithms. The current detector design aims to show that satisfactory performance can be achieved, while further optimizations are expected to significantly improve the overall performance. We present the characterization of the expected beam-induced background, describe the detector design and software used for detailed event simulations taking into account BIB effects. The expected performance of charged-particle reconstruction, jets, electrons, photons and muons is discussed, including an initial study on heavy-flavor jet tagging. A simple method to measure the delivered luminosity is also described. Overall, the proposed design and reconstruction algorithms can successfully reconstruct the high transverse-momentum objects needed to carry out a broad physics program.
72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
Electromagnetic shower reconstruction in the ICARUS liquid argon time projection chamber detector
The ICARUS-T600 liquid argon time projection chamber (LArTPC) detector is taking data at shallow depth as the far detector of the Short Baseline Neutrino (SBN) program at Fermilab, to search for a possible sterile neutrino signal at $\Delta m^{2} \approx 1~\text{eV}^{2}$ with the Booster (BNB) and Main Injector (NuMI) neutrino beams at $\GeV{\sim 0.8}$ and $\GeV{\sim 2}$ average energies respectively. The LArTPC technology, developed by the ICARUS collaboration and now a standard in neutrino physics, offers impressive charged-particle imaging capabilities with $\sim1 \ \text{mm}$ spatial resolution, enabling efficient discrimination between track-like signatures (e.g., from muons, pions, and protons) and electromagnetic showers (from electrons and photons). Moreover, electron and photon signatures can be distinguished both with the calorimetric measurement of local energy depositions at the shower start and with the cm-scale conversion gap signature of photons. This contribution discusses event reconstruction at ICARUS focusing on Pandora, a multi-algorithm pattern recognition software widely used in LArTPC experiments. Over a hundred Pandora algorithms and tools are used to reconstruct cosmic rays and neutrino interactions in the ICARUS detector. Recent developments have focused on the reconstruction of electromagnetic shower signatures, crucial to ensure a robust and efficient reconstruction of charged-current $\nu_e$ interactions, which serve as a key signature of sterile neutrino oscillations at SBN. In this contribution, recent improvements to the reconstruction are discussed, focusing on the discrimination between tracks and electromagnetic showers using neutrino simulations and data.
Triozzi, Riccardo [Padua U.; INFN, Padua] (ORCID:0↗
Convolutional Neural Networks for the CHIPS Neutrino Detector R&D Project.
The CHerenkov detectors In mine PitS (Chips) neutrino detector R&D project aims to develop novel strategies and technologies for very large yet ‘cheap as chips’ water Cherenkov neutrino detectors. Via deployment in a body of water, use of commercially available components, and instrumentation coverage optimisation for the study of exclusively accelerator beam neutrinos, Chips will enable megaton scale detectors to become a reality at the cost of $200k-$300k per kt of sensitive mass. During the summer of 2019 a prototype Chips detector, Chips-5, was deployed into the Wentworth 2W disused mine pit in northern Minnesota, 7 mrad off the NuMI beam axis. A novel data acquisition system was introduced using cheap single-board computers and open-source software. This work presents a novel approach to water Cherenkov neutrino detector event reconstruction and classification. Three forms of a Convolutional Neural Network, a type of deep learning algorithm, have been trained to reject cosmic muon events, classify beam events, and estimate neutrino energies, all using only the raw detector event as input. When evaluated on the expected distribution of Chips-5 events, this new approach is shown to be robust and explainable as well as providing a significant performance increase over the standard likelihood-based reconstruction and simple neural network classification. Promisingly, the performance presented here is comparable to the more complex (and expensive) neutrino oscillation experiments within the field.
46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
Improving ICARUS track reconstruction algorithms
The ICARUS experiment is part of the Short-Baseline Neutrino program at Fermilab. Its primary objective is to explore the possible existence of sterile neutrinos in the O(1 eV) mass range and to clarify the anomalies observed in the Liquid Scintillator Neutrino Detector and MiniBooNE experiments. The ICARUS-T600 detector is a Liquid Argon Time Projection Chamber, capable of producing high-resolution 3D images and precise calorimetric measurements of ionizing particles. This technology allows for a detailed study of neutrino interactions across a broad energy range, from a few keV to several hundred GeV. The track reconstruction is achieved through a software framework that applies a series of pattern recognition algorithms, transforming raw detector signals into fully reconstructed event topologies. This process involves identifying interaction vertices, particle tracks, and electromagnetic showers within the TPC. However, in certain cases, these algorithms may mistakenly break a single particle track into several shorter segments, interpreting each as a distinct particle. Since track length is used to estimate the particle's energy, such fragmentation can result in an energy underestimation of several hundred MeV. Furthermore, when a track is split into multiple segments, the particle identification (which relies on analyzing the energy loss as a function of the residual range) may fail, potentially leading to the loss of the entire event. To mitigate this problem, we have developed a dedicated algorithm designed to identify and reconnect (“stitch”) the tracks that were erroneously divided into multiple segments.
Ricci, Alessandro Maria [Pisa U.; INFN, Pisa] (ORC↗
Three-Dimensional Ultrastructure of Arabidopsis Cotyledons Infected with Colletotrichum higginsianum
We used serial block-face scanning electron microscopy (SBF-SEM) to study the host–pathogen interface between Arabidopsis cotyledons and the hemibiotrophic fungus Colletotrichum higginsianum. By combining high-pressure freezing and freeze-substitution with SBF-SEM, followed by segmentation and reconstruction of the imaging volume using the freely accessible software IMOD, we created 3D models of the series of cytological events that occur during the Colletotrichum–Arabidopsis susceptible interaction. We found that the host cell membranes underwent massive expansion to accommodate the rapidly growing intracellular hypha. As the fungal infection proceeded from the biotrophic to the necrotrophic stage, the host cell membranes went through increasing levels of disintegration culminating in host cell death. Intriguingly, we documented autophagosomes in proximity to biotrophic hyphae using transmission electron microscopy (TEM) and a concurrent increase in autophagic flux between early to mid/late biotrophic phase of the infection process. Occasionally, we observed osmiophilic bodies in the vicinity of biotrophic hyphae using TEM only and near necrotrophic hyphae under both TEM and SBF-SEM. Overall, we established a method for obtaining serial SBF-SEM images, each with a lateral ( x-y) pixel resolution of 10 nm and an axial ( z) resolution of 40 nm, that can be reconstructed into interactive 3D models using the IMOD. Application of this method to the Colletotrichum–Arabidopsis pathosystem allowed us to more fully understand the spatial arrangement and morphological architecture of the fungal hyphae after they penetrate epidermal cells of Arabidopsis cotyledons and the cytological changes the host cell undergoes as the infection progresses toward necrotrophy. [Formula: see text] Copyright © 2024 The Author(s). This is an open access article distributed under the CC BY 4.0 International license .
Biochemistry & Molecular Biology↗