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xGFabric: Coupling Sensor Networks and HPC Facilities with Private 5G Wireless Networks for Real-Time Digital Agriculture

Advanced scientific applications require coupling distributed sensor networks with centralized high-performance computing facilities. Citrus Under Protective Screening (CUPS) exemplifies this need in digital agriculture, where citrus research facilities are instrumented with numerous sensors monitoring environmental conditions and detecting protective screening damage. CUPS demands access to computational fluid dynamics codes for modeling environmental conditions and guiding real-time interventions like water application or robotic repairs. These computing domains have contrasting properties: sensor networks provide low-performance, limited-capacity, unreliable data access, while high-performance facilities offer enormous computing power through high-latency batch processing. Private 5G networks present novel capabilities addressing this challenge by providing low latency, high throughput, and reliability necessary for near-real-time coupling of edge sensor networks with HPC simulations. This work presents xGFabric, an end-to-end system coupling sensor networks with HPC facilities through Private 5G networks. The prototype connects remote sensors via 5G network slicing to HPC systems, enabling real-time digital agriculture simulation.

Digital Agriculture

Field size distributions for selected agricultural crops in the United States and Canada

Digitized agricultural field boundary taken in the United States and Canada during the LACIE and AgRISTARS programs, in 1977 through 1980, were used to construct histograms showing the distributions of field area, width, and length for crops for which there were data for 700 or more fields per state. The observed distributions of area and width for fields of 10 crops grown in 13 states of the United States and Canada were compared with best-fit inverse Gaussian distributions and with log-normal distributions. For 28 distributions of area and 16 distributions of width there was found to be a probability of greater than .01 of their being inverse Gaussian. There were 10 distributions of area for which there was probability of greater than .005 of their being log-normal. Distributions of area and width stratified by state and crop type appear to be unique. The inverse Gaussian, which represents a wide range of statistical distributions from skewed to almost symmetrical, can provide a useful model for distributions of field area.

Ferguson, M. C.

Agricultural inventory capabilities of machine processed LANDSAT digital data

Agricultural crop identification and acreage determination analysis of LANDSAT digital data was performed for two study areas. A multispectral image processing and analysis system was utilized to perform the manmachine interactive analysis. The developed techniques yielded crop acreage estimate results with accuracy greater than 90% and as high as 99%. These results are encouraging evidence of agricultural inventory capabilities of machine processed LANDSAT digital data.

Dietrick, D. L.

RSPECT: A PROSPECT-based model incorporating the real structure of rice leaves

Radiative transfer models (RTMs) describe how light is absorbed, scattered, and transmitted within leaves by simulating mechanistic light propagation processes. The PROSPECT model is based on measurable parameters (the leaf biochemical content) and a non-measurable parameter (the leaf anatomical structure represented by the leaf structure parameter (N)). The effect of N on the optical properties of leaves has been investigated through a number of local and global sensitivity analyses. Other studies have directly evaluated the effect of the leaf anatomical structure on spectral reflectance, particularly in the near infrared region. However, the relationship between N and the anatomical structure is unclear. Here, in this study, we leveraged eLeaf, a ray tracing-based 3D rice leaf simulator, to establish relationships between leaf anatomical features and spectral properties, enabling us to replace N in the PROSPECT-4 model with measurable leaf anatomical parameters and develop the RSPECT model. The leaf thickness at minor vein, leaf thickness at bulliform cells, mesophyll thickness at minor vein, and distance between two minor veins could be used to predict N effectively. The RSPECT model achieved spectral simulation accuracy comparable to PROSPECT-4 and was more suitable for parameter inversion of the physical and chemical properties of rice leaves, with relative root mean square errors of 7.4% for chlorophyll content, 5.6% for equivalent water thickness, and 7.5% for dry matter content. In conclusion, RSPECT improves radiative transfer modeling by integrating measurable anatomical features and provides a framework for extending this approach to other vegetation types.

hyperspectral

Landsat Thematic Mapper digital information content for agricultural environments

Landsat Thematic Mapper (TM) data collected for Imperial Valley, California in December, 1982 were digitally examined to assess their utility to distinguish among agricultural and other land-covers. Statistics for thirty-seven training sites representing a variety of crops plus urban, water and desert land-covers were obtained and analyzed using transformed divergence (TD) calculations. TD values were employed to assess intraclass variability and the best bands for classification. Four subscenes were selected for clustering or unsupervised signature extraction. These areas were agriculture, urban, desert and water land-covers. The number of clusters for these subscenes were examined and the best TM bands for interclass separability were identified. The results of the clustering and training site analyses for interclass separability were compared. The TM data were useful for the digital delimitation of most crops and other cover types in this analysis. Four bands of data are adequate for classification with the best results obtained by the selection of one band from each of the available portions of the electromagnetic spectrum. Different band combinations are best for various land-cover intraclass separability.

Haack, Barry

High Resolution Airborne Digital Imagery for Precision Agriculture

The Environmental Research Aircraft and Sensor Technology (ERAST) program is a NASA initiative that seeks to demonstrate the application of cost-effective aircraft and sensor technology to private commercial ventures. In 1997-98, a series of flight-demonstrations and image acquisition efforts were conducted over the Hawaiian Islands using a remotely-piloted solar- powered platform (Pathfinder) and a fixed-wing piloted aircraft (Navajo) equipped with a Kodak DCS450 CIR (color infrared) digital camera. As an ERAST Science Team Member, I defined a set of flight lines over the largest coffee plantation in Hawaii: the Kauai Coffee Company's 4,000 acre Koloa Estate. Past studies have demonstrated the applications of airborne digital imaging to agricultural management. Few studies have examined the usefulness of high resolution airborne multispectral imagery with 10 cm pixel sizes. The Kodak digital camera integrated with ERAST's Airborne Real Time Imaging System (ARTIS) which generated multiband CCD images consisting of 6 x 106 pixel elements. At the designated flight altitude of 1,000 feet over the coffee plantation, pixel size was 10 cm. The study involved the analysis of imagery acquired on 5 March 1998 for the detection of anomalous reflectance values and for the definition of spectral signatures as indicators of tree vigor and treatment effectiveness (e.g., drip irrigation; fertilizer application).

Herwitz, Stanley R.

Detecting agricultural to urban land use change from multi-temporal MSS digital data

Conversion of agricultural land to a variety of urban uses is a major problem along the Wasatch Front, Utah. Although LANDSAT MSS data is a relatively coarse tool for discriminating categories of change in urban-size plots, its availability prompts a thorough test of its power to detect change. The procedures being applied to a test area in Salt Lake County, Utah, where the land conversion problem is acute are presented. The identity of land uses before and after conversion was determined and digital procedures for doing so were compared. Several algorithms were compared, utilizing both raw data and preprocessed data. Verification of results involved high quality color infrared photography and field observation. Two data sets were digitally registered, specific change categories internally identified in the software, results tabulated by computer, and change maps printed at 1:24,000 scale.

Ridd, M. K.

Mapping of agricultural land use from ERTS-1 digital data

A study area was selected in Lancaster and Lebanon Counties, two of the major agricultural counties in Pennsylvania. This area was delineated on positive transparencies on MSS data collected on October 11, 1972 (1080-15185). Channel seven was used to delineate general land forms, drainage patterns, water and urban areas. Channel five was used to delineate highway networks. These identifiable features were useful aids for locating areas on the computer output. Computer generated maps were used to delineate broad land use categories, such as forest land, agricultural land, urban areas and water. These digital maps have a scale of approximately 1:24,000 thereby allowing direct comparison with U.S.G.S. 7.5 minute quadrangle sheets. Aircraft data were used as a form of ground truth useful for the delineation of land use patterns.

Wilson, A. D.

Data and Code for: Observation-constrained agroecosystem model inversion reveals continental-scale variation of winter wheat traits

This repository contains the simulation outputs and processing scripts associated with the study of winter wheat traits across the United States, utilizing the Ecosys agroecosystem model. The dataset includes model results for both rainfed and irrigated winter wheat systems, supporting the findings presented in the manuscript titled "Observation-constrained agroecosystem model inversion reveals continental-scale variation of winter wheat traits." Data includes the original Ecosys simulation outputs (archived in .db format within the compressed .zip files) and extracted analysis data (stored in .pkl files for efficient processing). Python code for data processing and figure generation is provided in a Jupyter notebook. External Observational Datasets should refer to the following official repositories for the input and validation data used in this study. The eddy covariance data from the AmeriFlux network (https://ameriflux.lbl.gov/). Climate-forcing data of NLDAS-2 from NASA LDAS (https://ldas.gsfc.nasa.gov/nldas/nldas-2-forcing-data). Soil data from the Gridded Soil Survey Geographic Database (gSSURGO), available at (https://www.nrcs.usda.gov/resources/data-and-reports/gridded-soil-survey-geographic-gssurgo-database). Crop yields, planting and harvest dates from the USDA public databases (https://quickstats.nass.usda.gov/; https://webapp.rma.usda.gov/apps/actuarialinformationbrowser/CropCriteria.aspx). Satellite-derived SLOPE GPP data from ORNL DAAC (https://daac.ornl.gov/cgi-bin/dsviewer.pl?ds_id=1786). Land use and crop progress information from the USDA Crop Data Layer and Crop Progress and Condition Gridded Layers (https://www.nass.usda.gov/Research_and_Science/). The Ecosys model code is available online at https://github.com/jinyun1tang/ECOSYS.

Wheat

Dataset: Breaking the barrier of human-annotated training data for machine-learning-aided plant research using aerial imagery

This dataset supports the implementation described in the manuscript "Breaking the Barrier of Human-Annotated Training Data for Machine-Learning-Aided Biological Research Using Aerial Imagery." It comprises UAV aerial imagery used to execute the code available at https://github.com/pixelvar79/GAN-Flowering-Detection-paper. For detailed information on dataset usage and instructions for implementing the code to reproduce the study, please refer to the GitHub repository.

generative and adversarial learning

Airborne Hyperspectral Imagery for the Detection of Agricultural Crop Stress

Multispectral digital imagery from aircraft or satellite is presently being used to derive basic assessments of crop health for growers and others involved in the agricultural industry. Research indicates that narrow band stress indices derived from hyperspectral imagery should have improved sensitivity to provide more specific information on the type and cause of crop stress, Under funding from the NASA Earth Observation Commercial Applications Program (EOCAP) we are identifying and evaluating scientific and commercial applications of hyperspectral imagery for the remote characterization of agricultural crop stress. During the summer of 1999 a field experiment was conducted with varying nitrogen treatments on a production corn-field in eastern Nebraska. The AVIRIS (Airborne Visible-Infrared Imaging Spectrometer) hyperspectral imager was flown at two critical dates during crop development, at two different altitudes, providing images with approximately 18m pixels and 3m pixels. Simultaneous supporting soil and crop characterization included spectral reflectance measurements above the canopy, biomass characterization, soil sampling, and aerial photography. In this paper we describe the experiment and results, and examine the following three issues relative to the utility of hyperspectral imagery for scientific study and commercial crop stress products: (1) Accuracy of reflectance derived stress indices relative to conventional measures of stress. We compare reflectance-derived indices (both field radiometer and AVIRIS) with applied nitrogen and with leaf level measurement of nitrogen availability and chlorophyll concentrations over the experimental plots (4 replications of 5 different nitrogen levels); (2) Ability of the hyperspectral sensors to detect sub-pixel areas under crop stress. We applied the stress indices to both the 3m and 18m AVIRIS imagery for the entire production corn field using several sub-pixel areas within the field to compare the relative sensitivity of each stress index; and (3) Comparative sensitivity of stress indices to realistic measurement uncertainties. We compare the stress indices calculated with several levels of spectral uncertainty (by shifting the wavelengths) and reflectance uncertainty (by systematically varying the reflectance retrieval code initialization).

Cassady, Philip E.

The use of LANDSAT digital data and computer-implemented techniques for an agricultural application

Agricultural applications procedures are described for use of LANDSAT digital data and other digitalized data (e.g., soils). The results of having followed these procedures are shown in production estimates for cotton and soybeans in Washington County, Mississippi. Examples of output products in both line printer and map formats are included, and a product adequacy assessment is made.

Joyce, A. T.

Agricultural land cover mapping in the context of a geographically referenced digital information system

The introduction of soil map information to the land cover mapping process can improve discrimination of land cover types and reduce confusion among crop types that may be caused by soil-specific management practices and background reflectance characteristics. Multiple dates of LANDSAT MSS digital were analyzed for three study areas in northern Missouri to produce cover types for major agricultural land cover classes. Digital data bases were then developed by adding ancillary data such as digitized soil and transportation network information to the LANDSAT-derived cover type map. Procedures were developed to manipulate the data base parameters to extract information applicable to user requirements. An agricultural information system combining such data can be used to determine the productive capacity of land to grow crops, fertilizer needs, chemical weed control rates, irrigation suitability, and trafficability of soil for planting.

Stoner, E. R.

Separation of man-made and natural patterns in high-altitude imagery of agricultural areas

A nonstationary linear digital filter is designed and implemented which extracts the natural features from high-altitude imagery of agricultural areas. Essentially, from an original image a new image is created which displays information related to soil properties, drainage patterns, crop disease, and other natural phenomena, and contains no information about crop type or row spacing. A model is developed to express the recorded brightness in a narrow-band image in terms of man-made and natural contributions and which describes statistically the spatial properties of each. The form of the minimum mean-square error linear filter for estimation of the natural component of the scene is derived and a suboptimal filter is implemented. Nonstationarity of the two-dimensional random processes contained in the model requires a unique technique for deriving the optimum filter. Finally, the filter depends on knowledge of field boundaries. An algorithm for boundary location is proposed, discussed, and implemented.

Samulon, A. S.

A framework for challenges and solutions in biodesign research

The bioeconomy represents an advanced economic paradigm that builds upon previous agricultural, industrial, and digital economic models. It seeks to tackle critical global challenges such as resource scarcity, escalating healthcare demands, and environmental degradation. At the heart of the bioeconomy is biomanufacturing, which uses natural or engineered enzymes or cell factories built from ​biological components like promoters, terminators, regulatory sequences, reporters, and functional genes into various chassis hosts (including animal, microbial, plant, and de novo systems) to create products such as food, energy, medicine, materials, chemicals, and engineered tissue/organs. An enabler of biomanufacturing is biodesign – also known as biosystems design and closely related to synthetic biology or engineering biology. This interdisciplinary field aims to understand and predictably modify existing life forms or create entirely new biological entities/systems using rational engineering strategies and automated design tools. Through these capabilities, biodesign supports the discovery, optimization, and creation of efficient platforms for biomanufacturing.

59 BASIC BIOLOGICAL SCIENCES

Investigation of remote sensing techniques as inputs to operational resource management

The author has identified the following significant results. Visual interpretation of 1:125,000 color LANDSAT prints produced timely level 1 maps of accuracies in excess of 80% for agricultural land identification. Accurate classification of agricultural land via digital analysis of LANDSAT CCT's required precise timing of the date of data collection with mid to late June optimum for western South Dakota. The LANDSAT repetitive nine day cycle over the state allowed the surface areas of stockdams and small reservoir systems to be monitored to provide a timely approximation of surface water conditions on the range. Combined use of DIRS, K-class, and LANDSAT CCT's demonstrated the ability to produce aspen maps of greater detail and timeliness than was available using US Forest Service maps. Visual temporal analyses of LANDSAT imagery improved highway map drainage information and were used to prepare a seven county drainage network. An optimum map of flood-prone areas was developed, utilizing high altitude aerial photography and USGS maps.

Schmer, F. A.