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At least 19 records

A two-dimensional primitive equation model of frontogenesis forced by confluence and horizontal shear

A two-dimensional primitive equation model of frontogenesis is presented. The model treats confluence and horizontal shear in combination. The structure and evolution of model frontal zones forced by confluence are described for a control case featuring a zero alongfront thermal gradient and positive and negative thermal gradients, facing downstream. A comparison is made with Miller's (1948) equation for the zero gradient situation to illustrate the significance of horizontal and vertical motions for the structure of the upper level frontal zone. Finally, the effects of ageostrophic circulations on the evolutionary and structural differences of frontal formations are studied.

Keyser, D.↗

The confluences of ideas leading to, and the flow of ideas emerging from, individual-based modeling of riverine fishes

In this review article, we trace the history of events leading to the development of individual-based models (IBMs) to represent aquatic organisms in rivers and streams. As a metaphor, we present this history as a series of confluences between individual scientists (tributaries) sharing ideas. We describe contributions of these models to science and management. One iconic feature of river IBMs is the linkage between flow and the physical habitat experienced by individual animals, and the first model that focused on this linkage is briefly described. We continue by reviewing the contributions of riverine IBMs to eight broad areas of scientific inquiry. The first four areas include research to understand the effects of flow regimes on fish populations, species interactions (e.g., size-mediated competition and predation), fish movement and habitat selection, and contaminant and water quality impacts on populations. Next, we review research using IBMs to guide conservation biology of imperiled taxa through population viability analysis, including research to understand river fragmentation by dams and reconnection, to understand genetic outcomes for riverine metapopulations, and to anticipate the future effects of temperature and climate change. This rich body of literature has contributed to both theoretical insights (e.g., about animal behavior and life history) and applied insights (e.g., population-level effects of flow regimes, temperature, and the effects of hydropower and other industries that share rivers with aquatic biota). Lastly, we finish by exploring promising branches that lie ahead in the braided, downstream channel that represents future river modeling research.

59 BASIC BIOLOGICAL SCIENCES↗

The confluence of machine learning and multiscale simulations

Multiscale modeling has a long history of use in structural biology, as computational biologists strive to overcome the time- and length-scale limits of atomistic molecular dynamics. Contemporary machine learning techniques, such as deep learning, have promoted advances in virtually every field of science and engineering and are revitalizing the traditional notions of multiscale modeling. Deep learning has found success in various approaches for distilling information from fine-scale models, such as building surrogate models and guiding the development of coarse-grained potentials. However, perhaps its most powerful use in multiscale modeling is in defining latent spaces that enable efficient exploration of conformational space. In conclusion, this confluence of machine learning and multiscale simulation with modern high-performance computing promises a new era of discovery and innovation in structural biology.

59 BASIC BIOLOGICAL SCIENCES↗

On the confluence of ultrafast high-temperature sintering and flash sintering phenomena

Ultrafast high-temperature sintering (UHS) and flash sintering are novel methods for rapid sintering of ceramics, often completed in just a few seconds. Here, we show that both also share two additional features: an abrupt rise in electrical conductivity, which is electronic, and electroluminescence. More fundamentally, both are related to phonon physics where MD calculations have shown that proliferation of phonons at the edge of the Brillouin zone can induce Frenkel pairs without the application of electrical fields. Here, we show that, indeed, heating without the application of electric field, can also induce flash: Rapid heating processes of thin films of an oxide-salt deposited on silk fibers, with a propane torch, are shown to induce electronic conductivity, electroluminescence, and rapid sintering of the oxide. Further, the discussion in this article harkens back to two inventions, more than a century ago, which can now be related to flash and UHS: (i) the Nernst glow lamp circa 1900, made from zirconia, and (ii) the Welsbach mantle, constituted from ceria doped thorium oxide, in the late nineteenth century. Thus, the confluence between high heating rate and electric field induced flash phenomena links the past to the new. The emerging question is how injection of phonons that has been shown to create Frenkels can further induce high electronic conductivity and electroluminescence in oxides. Both electronic conductivity and luminescence are likely related to the generation of electron–hole pairs.

36 MATERIALS SCIENCE↗

Magnetic charge and geometry confluence for ultra-low forward voltage diode in artificial honeycomb lattice

We report spin diode is important prerequisite to practical manifestation of spin electronics. Yet, a functioning magnetic diode at room temperature is still illusive. Here, we reveal diode-type phenomena due to magnetic charge mediated conduction in artificial honeycomb geometry, made of concave shape single domain permalloy element. We find that honeycomb lattice defies symmetry by populating vertices with low and high multiplicity magnetic charges, causing asymmetric magnetization, in applied current of opposite polarity. High multiplicity units create highly resistive network, thereby inhibiting magnetic charge dynamics propelled electrical conduction. However, practical realization of this effect requires modest demagnetization factor in constituting element. Concave structure fulfills the condition. Subsequently, magnetic diode behavior emerges across broad thermal range of T = 40 K–300 K. The finding is a departure from the prevailing notion of spin-charge interaction as the sole guiding principle behind spintronics. Consequently, a new vista, mediated by magnetic charge interaction, is envisaged for spintronic research.

36 MATERIALS SCIENCE↗

Digital analysis of Potomac River Basin ERTS imagery: Sedimentation levels at the Potomac-Anacostia confluence and strip mining in Allegheny County, Maryland

Two simple algorithms for classification of sedimentation levels in water and for delineation of active strip mines are in use as part of the development of a more general resource management information system. ERTS MSS CCT's are processed so that each pixel in each channel is geographically referenced and can be accessed individually during whole frame, multi-channel analysis or partial frame analysis. The sedimentation analysis clearly separates classes representing the turbid Anacostia water, the less disturbed Potomac (really), and mud flats resulting from effluent of a major sewage treatment plant. Mud flats of organic or mineral origin are easily distinguished.

Schubert, J. S.↗

The Confluence of Gangis and Eos Chasmas (5-12 deg S, 31-41 deg W): Geologic, Hydrologic, and Exobiologic Considerations for Landing Site at the East End of Valles Marineris

Over its 3,500 km length, Valles Marineris exhibits an enormous range of geologic and environmental diversity. At its western end, the canyon is dominated by the tectonic complex of Noctis Labyrinthus; while in the east it grades into an extensive region of chaos where scoured channels and streamlined islands provide evidence of catastrophic floods that spilled into the northern plains. In the central portion of the system, debris derived from the massive interior layered deposits of Candor and Ophir Chasmas spills into the central trough. In other areas, 6 km-deep exposures of Hesperian and Noachian-age canyon wall stratigraphy have collapsed in massive landslides that extend many tens of kilometers across the canyon floor. Ejecta from interior craters, aeolian sediments, and possible volcanics emanating from structurally controlled vents along the base of the scarps, further contribute to the canyon's geologic complexity. Following the initial rifting that gave birth to Valles Marineris, water appears to have been a principal agent in the canyon's geomorphic development an agent whose significance is given added weight by its potential role in both sustaining and preserving evidence of past life. In this regard, the interior layered deposits of Candor, Ophir, and Hebes Chasmas, have been identified as possible lucustrine sediments that may have been laid down in long-standing ice-covered lakes. The potential survival and growth of native organisms in such an environment, or in the aquifers whose disruption gave birth to the chaotic terrain and outflow channels to the north and east of the canyon, raises the possibility that fossil indicators of life may be present in the local sediment and rock. Because of the enormous distances over which these diverse environments occur, identifying a single landing site that maximizes the opportunity for scientific return is not a simple task. However, given the fluvial history and narrow geometry of the canyon, the presence of a single exit at its eastern end provides an opportunity for sampling that appears unequaled elsewhere in the system.

George, J. A.↗

Eddies Enhance Biological Production in the Weddell-Scotia Confluence of the Southern Ocean

Satellite data show that oceanic eddies generated in the Southern Antarctic Circumpolar Current Front (SACCF) are associated with increased phytoplankton biomass. Cyclonic eddies with high chlorophyll a concentration (Chl-a) retain phytoplankton within the eddy cores and increase the light available for photosynthesis in the upper mixed layer by limiting vertical mixing and lifting of the isopycnal surfaces. Anticyclonic eddies have low Chl-a in the core but increased Chl-a in the periphery. Cross-frontal mixing mediated by eddies transports nutrients (e.g., Fe and Si) to the north and contributes to the increased Chl-a in the frontal zone. Interannual variations in the cyclonic eddy activity are positively correlated with variations in Chl-a during the spring bloom in regions of the Antarctic Circumpolar Current around South Georgia.

Kahru, M.↗

Multibody Parachute Flight Simulations for Planetary Entry Trajectories Using "Equilibrium Points"

A method has been developed to reduce numerical stiffness and computer CPU requirements of high fidelity multibody flight simulations involving parachutes for planetary entry trajectories. Typical parachute entry configurations consist of entry bodies suspended from a parachute, connected by flexible lines. To accurately calculate line forces and moments, the simulations need to keep track of the point where the flexible lines meet (confluence point). In previous multibody parachute flight simulations, the confluence point has been modeled as a point mass. Using a point mass for the confluence point tends to make the simulation numerically stiff, because its mass is typically much less that than the main rigid body masses. One solution for stiff differential equations is to use a very small integration time step. However, this results in large computer CPU requirements. In the method described in the paper, the need for using a mass as the confluence point has been eliminated. Instead, the confluence point is modeled using an "equilibrium point". This point is calculated at every integration step as the point at which sum of all line forces is zero (static equilibrium). The use of this "equilibrium point" has the advantage of both reducing the numerical stiffness of the simulations, and eliminating the dynamical equations associated with vibration of a lumped mass on a high-tension string.

Raiszadeh, Ben↗

Considering Cell Proliferation to Optimize Detection of Radiation-induced 53BP1+ Foci in 15 Mouse Strains ex vivo

Due to high metabolic activity, proliferating cells continuously generate free radicals, which induce DNA double strand breaks (DSB). Fluorescently tagged nuclear foci of DNA repair protein 53 binding protein-1(53BP1) are used as a standard metric for measuring DSB formation at baseline and in response to environmental insults such as radiation. Here we demonstrate that the background level of spontaneous 53BP1+ foci formation can be modeled mathematically as a function of cell confluence, which is a metric of proliferation rate. This model was validated using spontaneous 53BP1+ foci data from 68 cultures of primary skin fibroblasts derived from 15 different strains of mice, showing a ~10 fold decrease from low to full confluence that is independent of mouse strain. We developed an online open access tool to correct for the impact of cell confluence on the detection of radiation-induced 53BP1+ foci (RIF). This tool provides guidelines for the number of cells required to reach statistical significance for the detection of excess foci induced by low doses of ionizing radiation as a function of confluence and time post-irradiation. We hope that this quantification tool will help the radiation biology community in the design of future experiments that utilize 53BP1+ foci-based quantification of radiation responses in vitro. Our “tool for enhanced results of RIF in cells” (terRIFic) can be found at: https://radbiolab.shinyapps.io/terrific/

Radiation, DNA damage, confluence↗

Time-resolved study of nonlinear three-magnon processes in yttrium iron garnet films

In this work, the temporal aspects of two nonlinear spin-wave processes, i.e., three-magnon splitting and confluence, were investigated in a yttrium iron garnet film. Three-magnon splitting involves the conversion of a magnon at the microwave pumping frequency f p into two magnons, each with a frequency near f p /2, while confluence refers to the subsequent combination of two of the split magnons into one with frequency f c < f p . Time-resolved Brillouin scattering measurements confirm that these processes occur close to the driving antenna (<1.7mm away), which is expected. Here, the data indicate, however, that magnons with larger group velocities are more likely to undergo confluence, which is not predicted by existing theory. Understanding the details of the splitting and confluence processes may have important implications for the use of short-wavelength spin waves for spintronic devices.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗