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CaGa crystallizes in the orthorhombic Cmcm space group. The structure is three-dimensional. Ca is bonded in a 7-coordinate geometry to seven equivalent Ga atoms. There are a spread of Ca–Ga bond distances ranging from 3.15–3.30 Å. Ga is bonded in a 9-coordinate geometry to seven equivalent Ca and two equivalent Ga atoms. Both Ga–Ga bond lengths are 2.72 Å.
Highlights: • Screening of 300 CHD patients revealed two rare missense variants (p.P51L & p.D327E) in NODAL. • A novel missense variation p.M345I was identified in ACVR1B. • Bioinformatic analyses suggested that these variants could have deleterious role. • Three-dimensional modelling suggested conformation changes in the mutated proteins compared to wild-type. • In vitro studies demonstrated that missense variants affect the function of NODAL and ACVR1B. NODAL signaling plays an essential role in vertebrate embryonic patterning and heart development. Accumulating evidences suggest that genetic mutations in TGF-β/NODAL signaling pathway can cause congenital heart disease in humans. To investigate the implication of NODAL signaling in isolated cardiovascular malformation, we have screened 300 non-syndromic CHD cases and 200 controls for NODAL and ACVR1B by Sanger sequencing and identified two rare missense (c.152C > T; p.P51L and c.981 T > A; p.D327E) variants in NODAL and a novel missense variant c.1035G > A; p.M345I in ACVR1B. All these variants are absent in 200 controls. Three-dimensional protein-modelling demonstrates that both p.P51L and p.D327E variations of NODAL and p.M345I mutation of ACVR1B, affect the tertiary structure of respective proteins. Variants of NODAL (p.P51L and p.D327E) and ACVR1B (p.M345I), significantly reduce the transactivation of AR3-Luc, (CAGA){sub 12}-Luc and (SBE){sub 4}-Luc promoters. Moreover, qRT-PCR results have also deciphered a reduction in the expression of cardiac-enriched transcription factors namely Gata4, Nkx2-5, and Tbx5 in both the mutants of NODAL. Decreased expression of, Gata4, Nkx2-5, Tbx5, and lefty is observed in p.M345I mutant of ACVR1B as well. Additionally, reduced phosphorylation of SMAD2/3 in response to these variants, suggests impaired NODAL signaling and possibly responsible for defective cell fate decision and differentiation of cardiomyocytes leading to CHD phenotype.
Continuum computational kinetic plasma models evolve the distribution function of a plasma species f s on a phase-space grid over time. In many problems of interest the distribution function has limited extent in velocity space; hence, using a uniform, highly refined mesh would be costly and slow. Nonuniform velocity grids can reduce the computational cost by placing more degrees of freedom where f s is appreciable and fewer where it is not. In this work we introduce a first-of-its kind discontinuous Galerkin approach to nonuniform velocity-space discretization using mapped velocity coordinates. This new method is presented in the context of a gyrokinetic model used to study magnetized plasmas. We create discretizations of collisionless and collisional terms using mappings in a way that exactly conserves particles and energy. Numerical tests of such properties are presented, and we show that this new discretization can reproduce earlier gyrokinetic simulations using grids with up to 6–60 times fewer cells and 22X-60X speed-ups depending on dimensionality, geometry and plasma parameters.
Multifluid simulations of plasma sheaths are increasingly used to model a wide variety of problems in plasma physics ranging from global magnetospheric flows around celestial bodies to plasma–wall interactions in thrusters and fusion devices. For multifluid problems, accurate boundary conditions to model an absorbing wall that resolves a classical sheath remain an open research area. This work justifies the use of vacuum boundary conditions for absorbing walls to show comparable accuracy between a multifluid sheath and lower moments of a continuum-kinetic sheath.
Here, this work studies the interaction between colliding plasma jets to understand regimes in which jet merging results in shock formation vs regimes in which the shock formation is mitigated due to the collisionless interpenetration of the jets. A kinetic model is required for this study because fluid models will always produce a shock upon the collision of plasma jets. The continuum-kinetic, Vlasov–Maxwell–Dougherty model with one velocity dimension is used to accurately capture shock heating, along with a novel coupling with a moment equation to evolve perpendicular temperature for computational efficiency. As a result, this relatively inexpensive simulation can be used for detailed scans of the parameter space toward predictions of shocked vs shock-mitigated regimes, which is of interest for several fusion concepts such as plasma-jet-driven magneto-inertial fusion, high-energy-density plasmas, astrophysical phenomena, and other laboratory plasmas. The initial results obtained using this approach are in agreement with the preliminary outcomes of the plasma liner experiment.