Distortional Effects of Noncovalent Interactions in the Crystal Lattice of a Cp*Ir(III) Acylhydroxamic Acid Complex: A Joint Experimental–Computational Study
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Antigen‐binding fragments with improved crystal lattice packing and enhanced conformational flexibility at the elbow region as crystallization chaperones
It has been shown previously that a set of three modifications—termed S1, Crystal Kappa, and elbow—act synergistically to improve the crystallizability of an antigen-binding fragment (Fab) framework. Here, we prepared a phage-displayed library and performed crystallization screenings to identify additional substitutions—located near the heavy-chain elbow region—which cooperate with the S1, Crystal Kappa, and elbow modifications to increase expression and improve crystallizability of the Fab framework even further. One substitution (K141Q) supports the signature Crystal Kappa-mediated Fab:Fab crystal lattice packing interaction. Another substitution (E172G) improves the compatibility of the elbow modification with the Fab framework by alleviating some of the strain incurred by the shortened and bulkier elbow linker region. A third substitution (F170W) generates a split-Fab conformation, resulting in a powerful crystal lattice packing interaction comprising the biological interaction interface between the variable heavy and light chain domains. In sum, we have used K141Q, E172G, and F170W substitutions—which complement the S1, Crystal Kappa, and elbow modifications—to generate a set of highly crystallizable Fab frameworks that can be used as chaperones to enable facile elucidation of Fab:antigen complex structures by x-ray crystallography.
37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
Formulation and characterization of a continuous crystal lattice orientation finite element method (LOFEM) and its application to dislocation fields
We report that since the 1950s, a large body of work has been published on connecting the curvature of a crystal lattice to geometrically necessary dislocations densities of a crystal lattice. Studying dislocation transmission through grains and across their boundaries requires the lattice curvature to be preserved. However, traditional crystal plasticity models and their numerical implementations do not formally preserve lattice curvature. In this paper, a continuous crystal lattice orientation finite element method (LOFEM) is proposed to rectify this impediment to the inclusion of dislocation-based constitutive models. The methodology is first presented, and then it is demonstrated for tension and compression deformations of a copper polycrystal. It is shown that under the same deformation histories, the lattice continuity constraint alters the evolving state in comparison to the traditional approach, including retarding the rate at which the crystallographic texture strengthens under monotonic deformation. Lastly, taking advantage of the finite element representation of the lattice orientation, the Nye tensor is computed on lattices misoriented by deformation and is subsequently used to compute evolving dislocation density distributions.
36 MATERIALS SCIENCE↗
Lattice damage and compositional changes in Xe ion irradiated In{sub x}Ga{sub 1-x}N (x = 0.32−1.0) single crystals
Lattice disorder and compositional changes in In{sub x}Ga{sub 1-x}N (x = 0.32, 0.47, 0.7, 0.8, and 1.0) films on GaN/Al{sub 2}O{sub 3} substrates, induced by room-temperature irradiation of 5 MeV Xe ions, have been investigated using both Rutherford backscattering spectrometry under ion-channeling conditions and time-of-flight secondary ion mass spectrometry. The results show that for a fluence of 3 × 10{sup 13 }cm{sup −2}, the relative level of lattice disorder in In{sub x}Ga{sub 1-x}N increases monotonically from 59% to 90% with increasing indium concentration x from 0.32 to 0.7; a further increase in x up to 1.0 leads to little increase in the disorder level. In contrast to Ga-rich In{sub x}Ga{sub 1-x}N (x = 0.32 and 0.47), significant volume swelling of up to ∼25% accompanied with oxidation in In-rich In{sub x}Ga{sub 1-x}N (x = 0.7, 0.8, and 1.0) is observed. In addition, irradiation-induced atomic mixing occurs at the interface of In-rich In{sub x}Ga{sub 1-x}N and GaN. The results from this study indicate an extreme susceptibility of the high In-content In{sub x}Ga{sub 1-x}N to heavy-ion irradiation, and suggest that cautions must be exercised in applying ion-implantation techniques to these materials at room temperature. Further studies of the irradiation behavior at elevated temperatures are warranted.
75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗
Hierarchy among the crystal lattice, charge density wave, and superconducting orders in transition metal dichalcogenides
Using high-energy x-ray scattering and large-scale three-dimensional (3D) structure modeling, in this study we investigate the relationship between the crystal lattice, charge density wave (CDW), and superconducting (SC) orders in transition metal dichalcogenides (TMDs). In particular, we systematically substitute Te for Se in Ta-Se-Te solid solutions, determine changes in their crystal lattice, and relate them to changes in the CDW transition temperature, $T_{CDW}$, and SC critical temperature, $T_c$ . We find that strong lattice distortions such as buckling of Ta layers are detrimental to the CDW and SC orders. The presence of a perfect lattice order in two dimensions is a prerequisite to the emergence of CDWs but insufficient to achieve a SC ordered state. For the SC order to emerge, the Ta sublattice should also appear periodic in 3D. Local chemical disorder may promote the SC order, and the perfectness of Ta coordination polyhedra is a factor contributing to its strength. A hierarchical relationship among the crystal lattice, CDW, and SC orders thus appears to exist in TMDs in a sense that different degrees of crystal lattice order-disorder promote and maintain the CDW and SC orders to a different extent, offering an opportunity to control the latter through modifying the former by rational design. Our findings are a step towards a better understanding of the correlation between lattice and electronic degrees of freedom in TMDs. We also demonstrate an efficient experimental approach to study them in fine detail.
75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗
Geometric treatment of conduction electron scattering by crystal lattice strains and dislocations
The problem of conduction electron scattering by inhomogeneous crystal lattice strains is addressed using a tight-binding formalism and the differential geometric treatment of deformations in solids. In this approach, the relative positions of neighboring atoms in a strained lattice are naturally taken into account, even in the presence of crystal dislocations, resulting in a fully covariant Schrödinger equation in the continuum limit. Unlike previous work, the developed formalism is applicable to cases involving purely elastic strains as well as discrete and continuous distributions of dislocations—in the latter two cases, it clearly demarcates the effects of the dislocation strain field and core. It also differentiates between elastic and plastic strain contributions, respectively. The electrical resistivity due to the strain field of edge dislocations is then evaluated and the resulting numerical estimate for Cu shows good agreement with reported experimental values. This indicates that the electrical resistivity of edge dislocations in metals is not entirely due to the core, contrary to current models. Application to the study of strain effects in constrained quantum systems is also discussed.
71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
Estimation of Crystal Lattice Deformations with Depth of Proton-Exchanged Optical Waveguides on Lithium Niobate Single Crystal Substrates
A method for determining the crystal phase and estimating the crystal lattice deformations in H{sub x}Li{sub 1-x}NbO{sub 3} proton-exchanged optical waveguides from an analysis of the Raman light scattering spectra measured with high spatial resolution (the so-called method of micro-RS spectroscopy) is suggested.
75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗
Vibrational states of a water molecule in a nano-cavity of beryl crystal lattice
Low-energy excitations of a single water molecule are studied when confined within a nano-size cavity formed by the ionic crystal lattice. Optical spectra are measured of manganese doped beryl single crystal Mn:Be{sub 3}Al{sub 2}Si{sub 6}O{sub 18}, that contains water molecules individually isolated in 0.51 nm diameter voids within the crystal lattice. Two types of orientation are distinguished: water-I molecules have their dipole moments aligned perpendicular to the c axis and dipole moments of water-II molecules are parallel to the c-axis. The optical conductivity σ(ν) and permittivity ε{sup ′}(ν) spectra are recorded in terahertz and infrared ranges, at frequencies from several wavenumbers up to ν = 7000 cm{sup −1}, at temperatures 5–300 K and for two polarizations, when the electric vector E of the radiation is parallel and perpendicular to the c-axis. Comparative experiments on as-grown and on dehydrated samples allow to identify the spectra of σ(ν) and ε{sup ′}(ν) caused exclusively by water molecules. In the infrared range, well-known internal modes ν{sub 1}, ν{sub 2}, and ν{sub 3} of the H{sub 2}O molecule are observed for both polarizations, indicating the presence of water-I and water-II molecules in the crystal. Spectra recorded below 1000 cm{sup −1} reveal a rich set of highly anisotropic features in the low-energy response of H{sub 2}O molecule in a crystalline nano-cavity. While for E∥c only two absorption peaks are detected, at ∼90 cm{sup −1} and ∼160 cm{sup −1}, several absorption bands are discovered for E⊥c, each consisting of narrower resonances. The bands are assigned to librational (400–500 cm{sup −1}) and translational (150–200 cm{sup −1}) vibrations of water-I molecule that is weakly coupled to the nano-cavity “walls.” A model is presented that explains the “fine structure” of the bands by a splitting of the energy levels due to quantum tunneling between the minima in a six-well potential relief felt by a molecule within the cavity.
37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
Magnetic ground states of honeycomb lattice Wigner crystals
Lattice Wigner crystal states stabilized by long-range Coulomb interactions have recently been realized in two-dimensional moiré materials. We employ large-scale unrestricted Hartree-Fock techniques to unveil the magnetic phase diagrams of honeycomb lattice Wigner crystals. For the three lattice filling factors with the largest charge gaps, $n=2/3,1/2,1/3$, the magnetic phase diagrams contain multiple phases, including ones with non-collinear and non-coplanar spin arrangements. We discuss magnetization evolution with external magnetic field, which has potential as an experimental signature of exotic spin states. Our theoretical results could potentially be validated in moiré materials formed from group VI transition metal dichalcogenide twisted homobilayers.
36 MATERIALS SCIENCE↗
The Influence of Modification on Crystal Lattice Stability of Austenite in Stainless Steel
Using the methods of electron diffraction microscopy and X-ray diffraction analysis, the influence of alloying of the austenitic steel, Grade 110H13, with chromium and vanadium, as well as high-melting, ultrafine-grained TiO{sub 2}, ZrO{sub 2} powders and Na{sub 3}AlF{sub 6} cryolite on its structural-phase state and microstructure is investigated. It is shown that the matrix of non-modified steel is completely austenitic and consists of an iron-based solid solution and the interstitial (C, N, O and other) and substitutional (Cr, V and other) atoms simultaneously. Alloying with chromium and vanadium changes neither its phase composition nor defect structure, while alloy modification results in qualitatively new structural features: γ → ε-transformation, high-intensity microtwinning, defect structure changes, and a sharp increase in the scalar dislocation density. The features of the deformation-induced microtwinning and ε-martensite plates identified in the modified steel promote revealing additional microtwin systems in the matrix γ-phase, which result in structural changes making it possible to classify it as a γ′-phase. It is found out that an introduction of modifying additions gives rise to the following sequence of structural-phase transformations: γ→γ′→(γ′ +ε). The experimental data obtained demonstrate that as a result of modification the crystal lattice transits into a low-stability state. This transition is accompanied by marked structural-phase changes consisting in the formation of several microtwin systems and γ → ε-transformation. These structural-phase changes in the modified steel are due to the crystal-lattice transition into the low-stability state, followed by new structural-phase alterations.
75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗
Dislocation‐Driven Formation of Oriented Macroperiodic Metastructures of Curved Single Crystal Lattices in Glass
Abstract Single crystals fabricated in glass by localized heating can develop uniquely deformed lattices stabilized by the surrounding amorphous medium. The development of lattice curvature appears to be intrinsic to the crystal growth process in some systems, while the result of the locally changing crystallography in others. In this work, a model laser‐fabricated rotating lattice Sb 2 S 3 crystal grown in stoichiometric glass is used to demonstrate fabrication of novel macroperiodic metastructures that utilize intrinsic lattice curvature superimposed with subtle crystallographic influences. The limited availability of slip systems drives the lattice curvature magnitude to vary with crystal growth direction, maximizing for lattices aligned with the predominant Burgers vector along with corresponding increases in dislocation density. Misaligned lattice orientations form smaller secondary lattice curvatures arising from misaligned Burgers vectors with further elastic contributions. Over extended crystal growth, these secondary components align the lattice to rotate about either the <001> or <010> crystal axes forming repeating metastructures of lattice orientation with periodicity 20–160 microns in length. The mechanistic approach used in this work may be expanded to other systems with known slip systems to better understand and design macroperiodic metastructures.
36 MATERIALS SCIENCE↗
Advanced thermoelectric materials with enhanced crystal lattice structure and methods of preparation
New skutterudite phases including Ru.sub.0.5 Pd.sub.0.5 Sb.sub.3, RuSb.sub.2 Te, and FeSb.sub.2 Te, have been prepared having desirable thermoelectric properties. In addition, a novel thermoelectric device has been prepared using skutterudite phase Fe.sub.0.5 Ni.sub.0.5 Sb.sub.3. The skutterudite-type crystal lattice structure of these semiconductor compounds and their enhanced thermoelectric properties results in semiconductor materials which may be used in the fabrication of thermoelectric elements to substantially improve the efficiency of the resulting thermoelectric device. Semiconductor materials having the desired skutterudite-type crystal lattice structure may be prepared in accordance with the present invention by using powder metallurgy techniques. Measurements of electrical and thermal transport properties of selected semiconductor materials prepared in accordance with the present invention, demonstrated high Hall mobilities and good Seebeck coefficients. These materials have low thermal conductivity and relatively low electrical resistivity, and are good candidates for low temperature thermoelectric applications.
Fleurial, Jean-Pierre↗
Electron microscopic investigation of crystal lattice bending-torsion and internal stresses in deformed polycrystalline alloys
Generalization of the results of electron microscopy investigations of the crystal lattice bending-torsion (χ) and the internal stresses (IS) was conducted. The deformed polycrystalline alloys and steels were investigated. The sources of χ and IS origin were established. The regularities of their change with the distance from the sources and the evolution with deformation were revealed. The contribution of IS into the deformation resistance was determined. The nature of formation of two sequences of dislocation substructure transformations during deformation of alloys was established.
36 MATERIALS SCIENCE↗
Upconversion of IR Radiation in a KGd(WO{sub 4}){sub 2} Crystal on Erbium and Thulium Ions in Trace Concentrations: Change of Excitation Schemes and Energy Transfer Through the Crystal Lattice
Data on the observation of simultaneous upconversion on trace erbium and thulium ions in a KGd(WO{sub 4}){sub 2} crystal excited by IR radiation with the wavelength near 806 nm are presented. The change of excitation schemes with an increase in pumping level and participation of the crystal matrix in the energy transfer from erbium to thulium ions are discussed.
36 MATERIALS SCIENCE↗
The Influence of Alternating Low-Cycle Bending Loads on Sheet Properties Having an Hcp Crystal Lattice
The process of cyclic bending was investigated using thin sheets of the magnesium alloy AZ31 and α-titanium. These materials possess an hcp crystal lattice with different c/a ratios. It turned out that the latter have a substantial influence on the sheet deformation behavior. Even for small deformations (up to 2% strain), a large influence on the yield stress was present for both materials. In addition, cyclic bending contributes to the activation of prismatic slip, which is accompanied by twinning and detwinning. The changes in sheet anisotropy following cyclic bending were determined using texture measurements. Specifically, the AZ31 alloy sheets exhibited a considerable change in anisotropy of the mechanical properties with an increasing number of bending cycles. The anisotropy in the yield stress increases from 15% in the initial condition to 40% after three cycles. For the α-titanium sheet, the change in anisotropy was approx. 26% less. In general, the largest changes in properties occurred already in the first bending cycle and a stabilization took place upon further cycling.
36 MATERIALS SCIENCE↗
Evolution of magnetism, valence, and crystal lattice in EuCd 2 As 2 under pressure
EuCd 2 As 2 has been proposed to be one of the ideal platforms as an intrinsic topological magnetic system, potentially hosting a single pair of Weyl points when it is tuned into the ferromagnetic state with spins aligned out of plane by either external pressure or chemical doping. To investigate the possible realization of an ideal topological state, we have systematically investigated pressure control of the magnetic state, valence, and crystal structure using synchrotron-based time-domain Mössbauer spectroscopy, x-ray absorption spectroscopy, and powder x-ray diffraction. Our experimental results show that the magnetic configuration remains mostly in plane under pressure up to 42.8 GPa and pressure effectively enhances the magnetic ordering temperature. Meanwhile, Eu ions remain divalent when subjected to pressure up to 35.9 GPa, and the trigonal crystal lattice is maintained up to 34.6 GPa. Our work provides valuable experimental data to benchmark future theoretical studies in magnetic topological materials.
75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗
Analysis of the crystal lattice instability for cage–cluster systems using the superatom model
We have investigated the lattice dynamics for a number of rare-earth hexaborides based on the superatom model within which the boron octahedron is substituted by one superatom with a mass equal to the mass of six boron atoms. Phenomenological models have been constructed for the acoustic and lowenergy optical phonon modes in RB{sub 6} (R = La, Gd, Tb, Dy) compounds. Using DyB{sub 6} as an example, we have studied the anomalous softening of longitudinal acoustic phonons in several crystallographic directions, an effect that is also typical of GdB{sub 6} and TbB{sub 6}. The softening of the acoustic branches is shown to be achieved through the introduction of negative interatomic force constants between rare-earth ions. We discuss the structural instability of hexaborides based on 4f elements, the role of valence instability in the lattice dynamics, and the influence of the number of f electrons on the degree of softening of phonon modes.
75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗