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DOE OSTI2026

Identification of potent inhibitors of JUN N-terminal kinases for treatment of endometriosis and associated pain

Endometriosis, defined as the ectopic growth of endometrial tissue outside of the uterine cavity, is an inflammatory and hormone-dependent disease that causes excruciating pelvic pain, infertility, and significantly decreases quality of life in affected patients. The JUN N-terminal kinases (JNKs) are a leading class of nonhormonal therapeutic targets that have been validated in preclinical models of endometriosis and in a Phase 1/2 clinical trial. Despite their therapeutic potential, JNK inhibitors with increased potency and specificity are needed to address the inflammatory pathology of endometriosis and to prevent disease progression. Leveraging a DNA-encoded chemical library collection of ~4 billion compounds, we identified lead inhibitor CDD-2428 and optimized derivatives, CDD-2728 and CDD-3013, with excellent binding affinity to JNK1-3 (K d = 0.12 to 3.7 nM), enhanced selectivity, metabolic stability, and cellular permeability. Crystallographic and biochemical studies confirmed that CDD-3013 exhibited superior kinase selectivity with improved efficacy compared to existing JNK inhibitors. In primary endometriosis cell models, CDD-2728 and CDD-3013 suppressed JNK-dependent inflammatory signaling, dampening pathways linked to pain, invasion, angiogenesis, and macrophage recruitment. In an endometriosis mouse model, both CDD-2728 and CDD-3013 reduced endometriotic lesion size, macrophage infiltration, and cellular proliferation, showing in vivo efficacy. When tested in a lipopolysaccharide-induced hyperalgesia model, CDD-2728 and CDD-3013 decreased markers of induced pain, as measured by changes in a dynamic weight bearing test and Grimace scores. These findings nominate CDD-2728 and CDD-3013 as potent, nonhormonal therapeutic candidates for endometriosis with broad anti-inflammatory and analgesic activity, addressing a critical unmet clinical need.

Madasu, Chandrashekhar [Department of Pathology an↗

DOE OSTI2024

Discovery of highly potent and ALK2/ALK1 selective kinase inhibitors using DNA-encoded chemistry technology

Activin receptor type 1 (ACVR1; ALK2) and activin receptor like type 1 (ACVRL1; ALK1) are transforming growth factor beta family receptors that integrate extracellular signals of bone morphogenic proteins (BMPs) and activins into Mothers Against Decapentaplegic homolog 1/5 (SMAD1/SMAD5) signaling complexes. Several activating mutations in ALK2 are implicated in fibrodysplasia ossificans progressiva (FOP), diffuse intrinsic pontine gliomas, and ependymomas. The ALK2 R206H mutation is also present in a subset of endometrial tumors, melanomas, non-small lung cancers, and colorectal cancers, and ALK2 expression is elevated in pancreatic cancer. Using DNA-encoded chemistry technology, we screened 3.94 billion unique compounds from our diverse DNA-encoded chemical libraries (DECLs) against the kinase domain of ALK2. Off-DNA synthesis of DECL hits and biochemical validation revealed nanomolar potent ALK2 inhibitors. Further structure-activity relationship studies yielded center for drug discovery (CDD)-2789, a potent [NanoBRET (NB) cell IC50: 0.54 μM] and metabolically stable analog with good pharmacological profile. Crystal structures of ALK2 bound with CDD-2281, CDD-2282, or CDD-2789 show that these inhibitors bind the active site through Van der Waals interactions and solvent-mediated hydrogen bonds. CDD-2789 exhibits high selectivity toward ALK2/ALK1 in KINOMEscan analysis and NB K192 assay. In cell-based studies, ALK2 inhibitors effectively attenuated activin A and BMP-induced Phosphorylated SMAD1/5 activation in fibroblasts from individuals with FOP in a dose-dependent manner. Thus, CDD-2789 is a valuable tool compound for further investigation of the biological functions of ALK2 and ALK1 and the therapeutic potential of specific inhibition of ALK2.

Jimmidi, Ravikumar↗

DOE OSTI2024

Who will be making wave energy? A community-driven design approach toward just and sustainable energy futures in Alaska

Renewable energy transition, once thought of as a singular, large-scale switch in industrial energy generating technologies from fossil fuels to renewables, have gained a broader set of requirements, including the need for justice and environmental protection. While discourse around policy and process has grown to consider these requirements, the focus of design of new renewable energy projects and technologies remains dominantly fixed on maximizing energy production, and renewables are falling short of meeting the requirements of just energy transitions. Meanwhile, in design studies, participatory and co-design approaches which explicitly consider justice in both process and outcomes have long been theorized and applied. However, applications of these approaches to renewable energy project design are under-theorized. In this paper, we explore the effectiveness of the adoption and adaptation of a co-design approach called Community-Driven Design (CDD) in enabling meaningful participation prior to technological maturity and bringing the attention of designers to a more diverse set of energy futures focused on justice and sustainability. Here, we do so by developing and testing the approach with community members in Sitka, AK, USA. We conclude that the approach has the potential to increase meaningful participation. Furthermore, we conclude that through diverse understandings of energy and the emergence of design narratives that engage with the complexity of vulnerability, accountability, and resilience, CDD led designers to consider justice, sustainability, and a diverse set of possible energy futures both within and beyond Sitka.

16 TIDAL AND WAVE POWER↗

DOE OSTI2024

Increasing extreme hourly precipitation risk for New York City after Hurricane Ida

The remnants of Hurricane Ida caused major damage and death in the United States on September 1st, 2021, and 11 people drowned in flooded basement apartments within New York City (NYC). It was catastrophic because the maximum hourly precipitation intensity, recorded as 3.47 inches (88.1 mm) per hour at Central Park, was unprecedentedly high for the NYC region. The stormwater infrastructure in NYC is built for 1.75 inches (44.5 mm) per hour, and so understanding the dynamic risk associated with Ida can inform city planning efforts for climate change’s impact on short duration extreme precipitation events. We contextualize this storm’s record-breaking hourly intensity within the historical record as well as project its risk in the near- to medium-term future using nonstationary stochastic models. These models are conditioned on average temperature (T avg ) and cooling degree day (CDD) projections from three climate models as a covariate, each with a SSP 126 and SSP 370 scenario. The likelihood of such a storm was slowly increasing even before Ida happened, but the projected aggregate reoccurrence risk of an event of Ida’s magnitude over time from the non-stationary models ranges from 4 to 52 times higher than the risk given by the stationary model. Using CDD as a covariate resulted in risks that were more than twice the magnitude than when using T avg . Presenting both covariates provides a broader envelope of uncertainty, which highlights the importance and nuances in the choice of a regionally appropriate covariate for non-stationary risk analysis.

Mossel, Carolien↗

DOE OSTI2025

Implications of Changes in Water Stress and Precipitation Extremes for Cocoa Production in Côte D'ivoire and Ghana

ABSTRACT Climate change induces high variability in drought patterns and extreme precipitation indices in rainfed cocoa farming, impacting cocoa production. This study evaluated water stress, meteorological and agricultural drought conditions, and critical extreme precipitation indices in the world's two largest cocoa‐producing nations from 1981 to 2022. The results revealed a significant reduction in total annual precipitation (PRCPTOT), in the last three decades, with the greatest decline in the 1991–2000 and 2011–2022 periods. Ghana experienced the most significant reduction up to 15% (200 mm/year) in the last decade, attributed to a substantial decrease in wet days number (RR1) up to 25 days per year, a reduction in maximum consecutive wet days (CWD) up to 6 days per year, and an increase in maximum consecutive dry days (CDD) up to 15 days per year. Moreover, there was a notable decline in the Simple Daily Intensity Index (SDII), with reductions of up to 4 mm/day in certain areas, contributing to increased drought frequency, severity, and duration. In the most recent decade (2011–2022), particularly during the extremely dry years of 2013 and 2015, cocoa‐growing regions in Ghana (GHA) and eastern Côte d'Ivoire (CIV) experienced prolonged agricultural drought expressed by soil moisture deficit, typically extending from May to September. Additionally, large portions of central and eastern Ghana, as well as northeastern Côte d'Ivoire experienced sustained water stress, with over three consecutive months of total monthly precipitation falling below 100 mm, negatively impacting cocoa productivity. The decrease in the yield in the range of 2.5% to 37% was noted in the dry years and the following years, varying according to the country depending on the severity of the drought. Sensitivity analysis highlights cocoa yield's responsiveness to drought and water stress, particularly in specific years when water stress occurred, such as 1984,1985, 1989, 1995, 1999, 2000, and 2008. Considering the observed trends in precipitation patterns and their impact on cocoa production, it is crucial to acknowledge the inherent uncertainty of future precipitation patterns due to climate change. To address this challenge effectively, our study underscores the importance of identifying and closely monitoring regions currently facing water stress, as determined by precipitation and drought indicators. Over the analysed period (1981–2022), we have noted shifts in the distribution of water‐stressed areas, highlighting the dynamic nature of this issue. Consequently, we advocate for a targeted approach to implement cocoa supplementary irrigation in consistently water‐stressed regions.

Obahoundje, Salomon [International Water Managemen↗