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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 19 records
All sourcesNASA NTRSDOE OSTI
DOE OSTI2019

Cloud Influence on ERA5 and AMPS Surface Downwelling Longwave Radiation Biases in West Antarctica

The surface downwelling longwave radiation component (LW?) is crucial for the determination of the surface energy budget and has significant implications for the resilience of ice surfaces in the polar regions. Accurate model evaluation of this radiation component requires knowledge about the phase, vertical distribution, and associated temperature of water in the atmosphere, all of which control the LW? signal measured at the surface. In this study, we examine the LW? model errors found in the Antarctic Mesoscale Prediction System (AMPS) operational forecast model and the ERA5 reanalysis model relative to observations from the AWARE campaign at McMurdo Station and the West Antarctic Ice Sheet (WAIS) Divide. The errors are calculated separately for observed clear sky conditions, ice cloud occurrences, and liquid-bearing cloud layer (LBCL) occurrences. The analysis results show a tendency (in both models at each site) to underestimate the LW? during clear sky conditions, high error variability (standard deviations > 20 W/m2) during any type of cloud occurrence, and negative LW? biases when LBCLs are observed (bias magnitudes > 15 W/m2 in tenuous LBCL cases; > 43 W/m2 in optically thick/opaque LBCLs instances). We suggest that a generally dry and liquid water-deficient atmosphere responsible for the identified LW? biases in both models is the result of excessive ice formation and growth, which could stem from model initial and lateral boundary conditions, microphysics scheme, aerosol representation, and/or limited vertical resolution.

Silber, Israel↗
DOE OSTI2018

Cyclic di-AMP Acts as an Extracellular Signal That Impacts Bacillus subtilis Biofilm Formation and Plant Attachment

ABSTRACT There is a growing appreciation for the impact that bacteria have on higher organisms. Plant roots often harbor beneficial microbes, such as the Gram-positive rhizobacterium Bacillus subtilis , that influence their growth and susceptibility to disease. The ability to form surface-attached microbial communities called biofilms is crucial for the ability of B. subtilis to adhere to and protect plant roots. In this study, strains harboring deletions of the B. subtilis genes known to synthesize and degrade the second messenger cyclic di-adenylate monophosphate (c-di-AMP) were examined for their involvement in biofilm formation and plant attachment. We found that intracellular production of c-di-AMP impacts colony biofilm architecture, biofilm gene expression, and plant attachment in B. subtilis . We also show that B. subtilis secretes c-di-AMP and that putative c-di-AMP transporters impact biofilm formation and plant root colonization. Taken together, our data describe a new role for c-di-AMP as a chemical signal that affects important cellular processes in the environmentally and agriculturally important soil bacterium B. subtilis . These results suggest that the “intracellular” signaling molecule c-di-AMP may also play a previously unappreciated role in interbacterial cell-cell communication within plant microbiomes. IMPORTANCE Plants harbor bacterial communities on their roots that can significantly impact their growth and pathogen resistance. In most cases, however, the signals that mediate host-microbe and microbe-microbe interactions within these communities are unknown. A detailed understanding of these interaction mechanisms could facilitate the manipulation of these communities for agricultural or environmental purposes. Bacillus subtilis is a plant-growth-promoting bacterium that adheres to roots by forming biofilms. We therefore began by exploring signals that might impact its biofilm formation. We found that B. subtilis secretes c-di-AMP and that the ability to produce, degrade, or transport cyclic di-adenylate monophosphate (c-di-AMP; a common bacterial second messenger) affects B. subtilis biofilm gene expression and plant attachment. To our knowledge, this is the first demonstration of c-di-AMP impacting a mutualist host-microbe association and suggests that c-di-AMP may function as a previously unappreciated extracellular signal able to mediate interactions within plant microbiomes.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2012

Multispecies Diffusion Capability For The AMP Nuclear Fuel Performance Code (LANL Milestone M31MS060301 Final Report)

This work addresses only diffusion. The contact solver in AMP was not sufficiently developed this year to attempt treatment of species contact. A cylindrical tensor diffusion coefficient model was added to the AMP code, with the KHHS model [1] implemented into the AMP material library as a specific example. A cylindrical tensor diffusion operator manufactured solution verification example was coded. Before meeting the full text of the milestone task, it remains to: (1) code and run a cylindrical tensor diffusion solver manufactured solution (2) code and run the validation example of [1] (3) document results. These are dependent on developing new capabilities for the AMP code requiring close collaboration with the AMP team at ORNL. The model implemented provides a good intermediate first step toward a general multi-species solver. The multi-species capability of the AMP nuclear fuel code [2] is intended to allow the modeling of radiation-driven redistribution of various elements through solid metal nuclear reactor fuels. The initial model AMP provides for U-Pu-Zr fuels is based on the analysis of the Integral Fast Reactor (IFR) fuel development program experiment X419 post-irradiation data described in [1], referred to here as the KHHS model. This model may be specific to that experiment, but it was thought to provide a good start for the AMP code, because it (1) is formulated at the engineering scale, (2) decouples the species from each other, (3) predetermines the phase boundaries so that reference to a phase diagram is not needed, and (4) one of the authors (Hayes) was the NEAMS Fuels IPSC manager for FY11. The KHHS model is formulated for radial fluxes as little axial redistribution is seen experimentally. As U-Pu-Zr fuel is irradiated, the constituents migrate to form three annular regions. The center region is Zr-enriched and U-depleted, the middle region is Zr-depleted and U-enriched, and the outer region is Zr-enriched and U-depleted. The Pu concentration stays roughly constant throughout with slight enrichment in the center and depletion near the surface. Pu acts as a solvent for the mixture. The experiment was only run to 1.9% burnup, so the model is not at this time applicable to the high-burnup scenarios that the AMP code is intended to eventually model.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗
DOE OSTI2017

Structural and functional studies of pyruvate carboxylase regulation by cyclic di-AMP in lactic acid bacteria

Cyclic di-3',5'-adenosine monophosphate (c-di-AMP) is a broadly conserved bacterial second messenger that has been implicated in a wide range of cellular processes. Our earlier studies showed that c-di-AMP regulates central metabolism in Listeria monocytogenes by inhibiting its pyruvate carboxylase (LmPC), a biotin-dependent enzyme with biotin carboxylase (BC) and carboxyltransferase (CT) activities. We report here structural, biochemical, and functional studies on the inhibition of Lactococcus lactis PC (LlPC) by c-di-AMP. The compound is bound at the dimer interface of the CT domain, at a site equivalent to that in LmPC, although it has a distinct binding mode in the LlPC complex. Here, this binding site is not well conserved among PCs, and only a subset of these bacterial enzymes are sensitive to c-di-AMP. Conformational changes in the CT dimer induced by c-di-AMP binding may be the molecular mechanism for its inhibitory activity. Mutations of residues in the binding site can abolish c-di-AMP inhibition. In L. lactis, LlPC is required for efficient milk acidification through its essential role in aspartate biosynthesis. The aspartate pool in L. lactis is negatively regulated by c-di-AMP, and high aspartate levels can be restored by expression of a c-di-AMP–insensitive LlPC. LlPC has high intrinsic catalytic activity and is not sensitive to acetyl-CoA activation, in contrast to other PC enzymes.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

Mesoscale evaluation of AMPS using AWARE radar observations of a wind and precipitation event over the Ross Island region of Antarctica

Surface, upper-air, and radar observations are used to assess the performance of the Antarctic Mesoscale Prediction System (AMPS) in simulating the mesoscale aspects of a wind and precipitation event over the Ross Island region of Antarctica that spanned January 16–20, 2016. The observations, collected during the Atmospheric Radiation Measurement (ARM) West Antarctic Radiation Experiment (AWARE), provide a unique dataset for evaluating AMPS, especially the radar observations that facilitate a three-dimensional depiction of winds and precipitation. Comparisons of AMPS forecast data with surface meteorology, balloon-sounding, and profiling radar observations at and above sites near McMurdo Station reveal a mixture of similarities and differences. A generally southerly flow is evident at low levels in both the AMPS simulations and observed Doppler radial velocities. AMPS winds are comparable to those observed at the surface and aloft in terms of magnitude, direction, and timing but the strongest simulated southerly flow is displaced eastward relative to the observations. AMPS-simulated reflectivity over the broader Ross Island region is more limited in areal extent and smaller in magnitude than observed by a scanning Doppler radar. Three episodes of surface precipitation are observed near McMurdo Station over the five-day event with peak rates of ~3 mm h -1 and a total accumulation of ~22 mm. However, AMPS produces no surface precipitation at that location over the five-day event due to a low-level dry bias in the forecasts. Herein, the results show the first observationally based three-dimensional understanding of meteorology in the Ross Island region.

AMPS↗
DOE OSTI2024

The multifaceted role of c-di-AMP signaling in the regulation of Porphyromonas gingivalis lipopolysaccharide structure and function

This study unveils the intricate functional association between cyclic di-3’,5’-adenylic acid (c-di-AMP) signaling, cellular bioenergetics, and the regulation of lipopolysaccharide (LPS) profile in Porphyromonas gingivalis, a Gram-negative obligate anaerobe considered as a keystone pathogen involved in the pathogenesis of chronic periodontitis. Previous research has identified variations in P. gingivalis LPS profile as a major virulence factor, yet the underlying mechanism of its modulation has remained elusive. We employed a comprehensive methodological approach, combining two mutants exhibiting varying levels of c-di-AMP compared to the wild type, alongside an optimized analytical methodology that combines conventional mass spectrometry techniques with a novel approach known as FLAT n . We demonstrate that c-di-AMP acts as a metabolic nexus, connecting bioenergetic status to nuanced shifts in fatty acid and glycosyl profiles within P. gingivalis LPS. Notably, the predicted regulator gene cdaR, serving as a potent regulator of c-di-AMP synthesis, was found essential for producing N-acetylgalactosamine and an unidentified glycolipid class associated with the LPS profile. The multifaceted roles of c-di-AMP in bacterial physiology are underscored, emphasizing its significance in orchestrating adaptive responses to stimuli. Furthermore, our findings illuminate the significance of LPS variations and c-di-AMP signaling in determining the biological activities and immunostimulatory potential of P. gingivalis LPS, promoting a pathoadaptive strategy. The study expands the understanding of c-di-AMP pathways in Gram-negative species, laying a foundation for future investigations into the mechanisms governing variations in LPS structure at the molecular level and their implications for host-pathogen interactions.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2019

Engineering a therapeutic microbe for site-of-infection delivery of encapsulated antimicrobial peptides (AMPs)

Antimicrobial peptides (AMPs) are promising therapeutics against antibiotic resistant pathogens, but they are difficult to administer at the site of infection due to poor stability. To enhance the stability of AMPs for effective and specific delivery at a site of infection, this project aimed to develop components of a novel, cell-based, drug delivery platform for AMPs in which a therapeutic microbe is engineered to specifically detect a pathogen of interest and effectively release AMPs at high, local concentrations in response. We focused the majority of our project on developing a system to produce normally host-toxic AMPs in our model therapeutic microbe (Escherichia coli) in high quantities using a protein cage system called an encapsulin (Enc) nanocompartment system. We were able to successfully produce an AMP called HBCM2 (HB), which is effective in killing our model pathogen, Pseudomonas aeruginosa, in E. coli by fusing it to an engineered, non-cage forming Enc protein, which prevented its toxicity to the E. coli. This engineered Enc protein could then be digested by a specific protease (TEV protease) for release of HB when desired. In addition to the HB production system, we also constructed a preliminary engineered E. coli capable of sensing P. aeruginosa via its specific quorum-sensing molecule, producing HB peptide, and releasing it via self-lysis in response. Preliminary characterization of this system was conducted, but we hope to fully characterize the system in future studies. The overall results produced from this study demonstrate the power of synthetic biology to confer novel functions on cells for biomanufacturing and therapeutic applications.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

Automated Mobility Platforms (AMPs) for Versatile, Energy Efficient, Facility and District Scale Transport

The Automated Mobility Platforms (AMPs) concept is envisioned as an on-demand network of automated lightweight electric vehicles serving mobility needs in a large facility or district-scale setting. Supplanting the function of legacy automated people mover systems, AMPs is scalable to meet the needs of moving people in large interior spaces with destinations that are too distant for walking and in which larger motor vehicles would be unfeasible or undesirable. The AMPs system is designed for automated management and operation, extending to how and where the vehicles are sent to serve mobility needs, as organized through a supervisory management system. AMPs vehicles are requested by users via smartphone app or buttons located on interactive infrastructure elements. AMPs vehicles function similarly to elevators, though in the horizontal plane, wherein users summon vehicles, and are moved point-to-point, with user requested destinations set through intuitive interfaces. The concept targets extensibility, manageability, and performance improvements over legacy technologies, with accessibility and safety features integrally designed into the system.

ADA supportive modes↗
DOE OSTI2016

Metabolite Regulation of Nuclear Localization of Carbohydrate-response Element-binding Protein (ChREBP): Role of AMP as an Allosteric Inhibitor

The carbohydrate-response element-binding protein (ChREBP) is a glucose-responsive transcription factor that plays an essential role in converting excess carbohydrate to fat storage in the liver. In response to glucose levels, ChREBP is regulated by nuclear/cytosol trafficking via interaction with 14-3-3 proteins, CRM-1 (exportin-1 or XPO-1), or importins. Nuclear localization of ChREBP was rapidly inhibited when incubated in branched-chain α-ketoacids, saturated and unsaturated fatty acids, or 5-aminoimidazole-4-carboxamide ribonucleotide. Here, we discovered that protein-free extracts of high fat-fed livers contained, in addition to ketone bodies, a new metabolite, identified as AMP, which specifically activates the interaction between ChREBP and 14-3-3. The crystal structure showed that AMP binds directly to the N terminus of ChREBP-α2 helix. Our results suggest that AMP inhibits the nuclear localization of ChREBP through an allosteric activation of ChREBP/14-3-3 interactions and not by activation of AMPK. As a result, AMP and ketone bodies together can therefore inhibit lipogenesis by restricting localization of ChREBP to the cytoplasm during periods of ketosis.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2012

The AMP (Advanced MultiPhysics) Nuclear Fuel Performance Code

The AMP (Advanced MultiPhysics) Nuclear Fuel Performance code is a new, three-dimensional, multi-physics tool that uses state-of-the-art solution methods and validated nuclear fuel models to simulate the nominal operation and anticipated operational transients of nuclear fuel. The AMP Nuclear Fuel Performance code leverages existing validated material models from traditional fuel performance codes and the Scale/ORIGEN-S spent-fuel characterization code to provide an initial capability that is shown to be sufficiently accurate for a single benchmark problem and anticipated to be accurate for a broad range of problems. The thermomechanics-chemical foundation can be solved in a time-dependent or quasi-static approach with any variation of operator-split or fully-coupled solutions at each time step. The AMP Nuclear Fuel Performance code provides interoperable interfaces to leading computational mathematics tools, which will simplify the integration of the code into existing parallel code suites for reactor simulation or lower-length-scale coupling. A baseline validation of the AMP Nuclear Fuel Performance code has been performed through the modeling of an experiment in the Halden Reactor Project (IFA-432), which is the first validation problem incorporated in the FRAPCON Integral Assessment report.

Clarno, Kevin T↗
DOE OSTI2023

Neutralization profiles of HIV-1 viruses from the VRC01 Antibody Mediated Prevention (AMP) trials

The VRC01 Antibody Mediated Prevention (AMP) efficacy trials conducted between 2016 and 2020 showed for the first time that passively administered broadly neutralizing antibodies (bnAbs) could prevent HIV-1 acquisition against bnAb-sensitive viruses. HIV-1 viruses isolated from AMP participants who acquired infection during the study in the sub-Saharan African (HVTN 703/HPTN 081) and the Americas/European (HVTN 704/HPTN 085) trials represent a panel of currently circulating strains of HIV-1 and offer a unique opportunity to investigate the sensitivity of the virus to broadly neutralizing antibodies (bnAbs) being considered for clinical development. Pseudoviruses were constructed using envelope sequences from 218 individuals. The majority of viruses identified were clade B and C; with clades A, D, F and G and recombinants AC and BF detected at lower frequencies. We tested eight bnAbs in clinical development (VRC01, VRC07-523LS, 3BNC117, CAP256.25, PGDM1400, PGT121, 10–1074 and 10E8v4) for neutralization against all AMP placebo viruses (n = 76). Compared to older clade C viruses (1998–2010), the HVTN703/HPTN081 clade C viruses showed increased resistance to VRC07-523LS and CAP256.25. At a concentration of 1μg/ml (IC80), predictive modeling identified the triple combination of V3/V2-glycan/CD4bs-targeting bnAbs (10-1074/PGDM1400/VRC07-523LS) as the best against clade C viruses and a combination of MPER/V3/CD4bs-targeting bnAbs (10E8v4/10-1074/VRC07-523LS) as the best against clade B viruses, due to low coverage of V2-glycan directed bnAbs against clade B viruses. Overall, the AMP placebo viruses represent a valuable resource for defining the sensitivity of contemporaneous circulating viral strains to bnAbs and highlight the need to update reference panels regularly. Our data also suggests that combining bnAbs in passive immunization trials would improve coverage of global viruses.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2019

Microphysics of summer clouds in central West Antarctica simulated by the Polar Weather Research and Forecasting Model (WRF) and the Antarctic Mesoscale Prediction System (AMPS)

Abstract. The Atmospheric Radiation Measurement (ARM) West Antarctic Radiation Experiment (AWARE) provided a highly detailed set of remote-sensing and surface observations to study Antarctic clouds and surface energy balance, which have received much less attention than for the Arctic due to greater logistical challenges. Limited prior Antarctic cloud observations have slowed the progress of numerical weather prediction in this region. The AWARE observations from the West Antarctic Ice Sheet (WAIS) Divide during December 2015 and January 2016 are used to evaluate the operational forecasts of the Antarctic Mesoscale Prediction System (AMPS) and new simulations with the Polar Weather Research and Forecasting Model (WRF) 3.9.1. The Polar WRF 3.9.1 simulations are conducted with the WRF single-moment 5-class microphysics (WSM5C) used by the AMPS and with newer generation microphysics schemes. The AMPS simulates few liquid clouds during summer at the WAIS Divide, which is inconsistent with observations of frequent low-level liquid clouds. Polar WRF 3.9.1 simulations show that this result is a consequence of WSM5C. More advanced microphysics schemes simulate more cloud liquid water and produce stronger cloud radiative forcing, resulting in downward longwave and shortwave radiation at the surface more in agreement with observations. Similarly, increased cloud fraction is simulated with the more advanced microphysics schemes. All of the simulations, however, produce smaller net cloud fractions than observed. Ice water paths vary less between the simulations than liquid water paths. The colder and drier atmosphere driven by the Global Forecast System (GFS) initial and boundary conditions for AMPS forecasts produces lesser cloud amounts than the Polar WRF 3.9.1 simulations driven by ERA-Interim.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2012

Advanced Multi-Physics (AMP)

The Advanced Multi-Physics (AMP) code, in its present form, will allow a user to build a multi-physics application code for existing mechanics and diffusion operators and extend them with user-defined material models and new physics operators. There are examples that demonstrate mechanics, thermo-mechanics, coupled diffusion, and mechanical contact. The AMP code is designed to leverage a variety of mathematical solvers (PETSc, Trilinos, SUNDIALS, and AMP solvers) and mesh databases (LibMesh and AMP) in a consistent interchangeable approach.

Philip, Bobby↗
DOE OSTI2024

A Multi-Dimensional Benefit Assessment of Automated Mobility Platforms (AMP) for Large Facilities

Automated Mobility Platform (AMP) is a general term for intelligently managed passenger mobility systems that leverage automation and electrification to improve system performance and sustainability through the integration of real-time data streams with advanced decision-making processes tailored for use in large facilities. Using airports as an example, the rapid growth in air travel demand has led to facility expansions and congested terminals, which directly impacts equity (e.g., increased challenges for passengers with reduced mobility [PRMs]) and sustainability - both of which are important metrics often neglected during the engineering design process. Therefore, to evaluate systems and inform critical decisions more effectively, a holistic evaluation framework is proposed that includes equity, sustainability, and infrastructure perspectives - referred to as a multidimensional benefit assessment. More specifically, the following analysis focuses on: (1) mobility, with emphasis on travel time and accessibility within an airport, contrasting existing systems with the proposed AMP system; (2) equity analysis, specifically to the PRM community, but with an eye to the whole of society; (3) energy consumption and greenhouse gas (GHG) emissions associated with intra-airport mobility, comparing and contrasting modes as well as impacts on overall airport operations efficiency; and (4) fundamental changes in building design enabled by AMPs for larger and more flexible, functional, and energy-efficient structures.

ADVANCED PROPULSION SYSTEMS↗
DOE OSTI2012

The Applied Mathematics for Power Systems (AMPS)

Increased deployment of new technologies, e.g., renewable generation and electric vehicles, is rapidly transforming electrical power networks by crossing previously distinct spatiotemporal scales and invalidating many traditional approaches for designing, analyzing, and operating power grids. This trend is expected to accelerate over the coming years, bringing the disruptive challenge of complexity, but also opportunities to deliver unprecedented efficiency and reliability. Our Applied Mathematics for Power Systems (AMPS) Center will discover, enable, and solve emerging mathematics challenges arising in power systems and, more generally, in complex engineered networks. We will develop foundational applied mathematics resulting in rigorous algorithms and simulation toolboxes for modern and future engineered networks. The AMPS Center deconstruction/reconstruction approach 'deconstructs' complex networks into sub-problems within non-separable spatiotemporal scales, a missing step in 20th century modeling of engineered networks. These sub-problems are addressed within the appropriate AMPS foundational pillar - complex systems, control theory, and optimization theory - and merged or 'reconstructed' at their boundaries into more general mathematical descriptions of complex engineered networks where important new questions are formulated and attacked. These two steps, iterated multiple times, will bridge the growing chasm between the legacy power grid and its future as a complex engineered network.

24 POWER TRANSMISSION AND DISTRIBUTION↗
DOE OSTI2014

AMPED Program Overview

An overview presentation about ARPA-E's AMPED program. AMPED projects seek to develop advanced sensing, control, and power management technologies that redefine the way we think about battery management. Energy storage can significantly improve U.S. energy independence, efficiency, and security by enabling a new generation of electric vehicles. While rapid progress is being made in new battery materials and storage technologies, few innovations have emerged in the management of advanced battery systems. AMPED aims to unlock enormous untapped potential in the performance, safety, and lifetime of today's commercial battery systems exclusively through system-level innovations, and is thus distinct from existing efforts to enhance underlying battery materials and architectures.

25 ENERGY STORAGE↗