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Toward a New Generation of Agricultural System Data, Models, and Knowledge Products: State of Agricultural Systems Science

We review the current state of agricultural systems science, focusing in particular on the capabilities and limitations of agricultural systems models. We discuss the state of models relative to five different Use Cases spanning field, farm, landscape, regional, and global spatial scales and engaging questions in past, current, and future time periods. Contributions from multiple disciplines have made major advances relevant to a wide range of agricultural system model applications at various spatial and temporal scales. Although current agricultural systems models have features that are needed for the Use Cases, we found that all of them have limitations and need to be improved. We identified common limitations across all Use Cases, namely 1) a scarcity of data for developing, evaluating, and applying agricultural system models and 2) inadequate knowledge systems that effectively communicate model results to society. We argue that these limitations are greater obstacles to progress than gaps in conceptual theory or available methods for using system models. New initiatives on open data show promise for addressing the data problem, but there also needs to be a cultural change among agricultural researchers to ensure that data for addressing the range of Use Cases are available for future model improvements and applications. We conclude that multiple platforms and multiple models are needed for model applications for different purposes. The Use Cases provide a useful framework for considering capabilities and limitations of existing models and data.

Livestock models↗

Brief History of Agricultural Systems Modeling

Agricultural systems science generates knowledge that allows researchers to consider complex problems or take informed agricultural decisions. The rich history of this science exemplifies the diversity of systems and scales over which they operate and have been studied. Modeling, an essential tool in agricultural systems science, has been accomplished by scientists from a wide range of disciplines, who have contributed concepts and tools over more than six decades. As agricultural scientists now consider the next generation models, data, and knowledge products needed to meet the increasingly complex systems problems faced by society, it is important to take stock of this history and its lessons to ensure that we avoid re-invention and strive to consider all dimensions of associated challenges. To this end, we summarize here the history of agricultural systems modeling and identify lessons learned that can help guide the design and development of next generation of agricultural system tools and methods. A number of past events combined with overall technological progress in other fields have strongly contributed to the evolution of agricultural system modeling, including development of process-based bio-physical models of crops and livestock, statistical models based on historical observations, and economic optimization and simulation models at household and regional to global scales. Characteristics of agricultural systems models have varied widely depending on the systems involved, their scales, and the wide range of purposes that motivated their development and use by researchers in different disciplines. Recent trends in broader collaboration across institutions, across disciplines, and between the public and private sectors suggest that the stage is set for the major advances in agricultural systems science that are needed for the next generation of models, databases, knowledge products and decision support systems. The lessons from history should be considered to help avoid roadblocks and pitfalls as the community develops this next generation of agricultural systems models.

agricultural systems↗

Detecting transition in agricultural systems

Remote sensing of agricultural phenomena has been largely concentrated on analysis of agriculture at the field level. Concern has been to identify crop status, crop condition, and crop distribution, all of which are spatially analyzed on a field-by-field basis. A more general level of abstraction is the agricultural system, or the complex of crops and other land cover that differentiate various agricultural economies. The paper reports on a methodology to assist in the analysis of the landscape elements of agricultural systems with Landsat digital data. The methodology involves tracing periods of photosynthetic activity for a fixed area. Change from one agricultural system to another is detected through shifts in the intensity and periodicity of photosynthetic activity as recorded in the radiometric return to Landsat. The Landsat-derived radiometric indicator of photosynthetic activity appears to provide the ability to differentiate agricultural systems from each other as well as from conterminous natural vegetation.

Neary, P. J.↗

AgMIP Regional Integrated Assessment of Agricultural Systems in Nioro, Senegal: Representative Agricultural Pathways, Climate, Crop and Economic Datasets

This paper describes the datasets that were used to implement an AgMIP Regional Integrated Assessment for the Nioro region of Senegal to assess the potential impacts of climate change on the principal agricultural system in the Senegal peanut basin and to assess adaptations of that system to climate change under current as well as future climate and socio-economic conditions. This dataset includes the Representative Agricultural Pathways developed for Nioro from 2000-2050; the climate data that were used to implement crop yield simulations; the data that were used to parameterize the DSSAT and APSIM crop models, including historical climate data and future climate scenarios; and the data that were used to parameterize the Tradeoff Analysis Model for Multi-dimensional Impact Assessment (TOAMD) economic simulation model, as well as simulated model outputs.

AgMIP↗

Next Generation Agricultural System Data, Models and Knowledge Products: Introduction

Agricultural system models have become important tools to provide predictive and assessment capability to a growing array of decision-makers in the private and public sectors. Despite ongoing research and model improvements, many of the agricultural models today are direct descendants of research investments initially made 30-40 years ago, and many of the major advances in data, information and communication technology (ICT) of the past decade have not been fully exploited. The purpose of this Special Issue of Agricultural Systems is to lay the foundation for the next generation of agricultural systems data, models and knowledge products. The Special Issue is based on a 'NextGen' study led by the Agricultural Model Intercomparison and Improvement Project (AgMIP) with support from the Bill and Melinda Gates Foundation.

Next generation↗

Remote monitoring of agricultural systems using NDVI time series and machine learning methods: a tool for an adaptive agricultural policy

This study aims to provide accurate information about changes in agricultural systems (AS) using phenological metrics derived from the NDVI time series. Use of such information could help land managers optimize land use choices and monitor the status of agricultural lands, under a variety of environmental and socioeconomic conditions. For this purpose, the Moderate Resolution Imaging Spectroradiometer (MODIS) NDVI data were used to derive phenological metrics over the Oum Er-Rbia basin (central Morocco). Random forest (RF), support vector machine (SVM), and K-nearest neighbor (KNN) classifiers were explored and compared on their ability to classify AS classes over the study area. Four main AS classes have been considered: (1) irrigated annual crop (IAC), (2) irrigated perennial crop (IPC), (3) rainfed area (RA), and (4) fallow (FA). By comparing the accuracy of the three classifiers, the RF method showed the best performance with an overall accuracy of 0.97 and kappa coefficient of 0.96.The RF method was then chosen to examine time variations in AS over a 16-year period (2000–2016). The AS main variations were detected and evaluated for the four AS classes. These variations have been found to be linked well with other indicators of local agricultural land management, as well as the historical agricultural drought changes over the study area. Overall, the results present a tool for decision makers to improve agricultural management and provide a different perspective in understanding the spatiotemporal dynamics of agricultural systems.

Youssef Lebrini↗

Next Generation Agricultural System Models and Knowledge Products: Synthesis and Strategy

The purpose of this Special Issue of Agricultural Systems is to lay the foundation for the next generation of agricultural systems data, models and knowledge products. In the Introduction to this Special Issue, we described a vision for accelerating the rate of agricultural innovation and meeting the growing global need for food and fiber. In this concluding article of the NextGen Special Issue we synthesize insights and formulate a strategy to advance data, models, and knowledge products that are consistent with this vision. This strategy is designed to facilitate a transition from the current, primarily supply-driven approach toward a more demand-driven approach that would address key Use Cases where better data, models and knowledge products are seen by end-users as essential to meet their needs.

Next generation↗

Towards a New Generation of Agricultural System Data, Models and Knowledge Products: Design and Improvement

This paper presents ideas for a new generation of agricultural system models that could meet the needs of a growing community of end-users exemplified by a set of Use Cases. We envision new data, models and knowledge products that could accelerate the innovation process that is needed to achieve the goal of achieving sustainable local, regional and global food security. We identify desirable features for models, and describe some of the potential advances that we envisage for model components and their integration. We propose an implementation strategy that would link a "pre-competitive" space for model development to a "competitive space" for knowledge product development and through private-public partnerships for new data infrastructure. Specific model improvements would be based on further testing and evaluation of existing models, the development and testing of modular model components and integration, and linkages of model integration platforms to new data management and visualization tools.

Agricultural systems↗

Coupling Circularity With Carbon Negativity in Food and Agriculture Systems

Achieving a circular economy is critical for a sustainable future, particularly in sectors that currently produce resource-intensive products in a linear fashion, such as food and agriculture. At the same time, technologies that remove atmospheric CO 2 , often referred to as carbon dioxide removal (CDR) or carbon negativity, must be developed and deployed rapidly if we are to avoid the worst effects of climate change. Circularity and CDR are often assessed and discussed independently, even though they are highly intertwined. Innovations to food and agriculture systems are essential to achieving a circular economy and enabling rapid deployment of CDR technologies. We explore critical areas of technology that must undergo rapid innovation (upstream and downstream) to food processing and consumption, namely precision and regenerative agriculture and biorefining, respectively. If implemented at scale, these two areas of technology have the potential to couple circularity with carbon negativity in food production systems.

Biorefining↗

Enhance indigenous agricultural systems to reduce migration

Changes in social and environmental conditions in the Western Highlands of Guatemala undermine food security and job opportunities. Here, we describe how targeted assistance can build upon traditional agricultural systems to increase adaptive capacity, improve nutrition, provide jobs and thereby reduce pressures to migrate.

54 ENVIRONMENTAL SCIENCES↗

AgMIP's Transdisciplinary Agricultural Systems Approach to Regional Integrated Assessment of Climate Impacts, Vulnerability, and Adaptation

This chapter describes methods developed by the Agricultural Model Intercomparison and Improvement Project (AgMIP) to implement a transdisciplinary, systems-based approach for regional-scale (local to national) integrated assessment of agricultural systems under future climate, biophysical, and socio-economic conditions. These methods were used by the AgMIP regional research teams in Sub-Saharan Africa and South Asia to implement the analyses reported in their respective chapters of this book. Additional technical details are provided in Appendix 1.The principal goal that motivates AgMIP's regional integrated assessment (RIA) methodology is to provide scientifically rigorous information needed to support improved decision-making by various stakeholders, ranging from local to national and international non-governmental and governmental organizations.

agriculture↗

Future impacts of ozone driven damages on agricultural systems

Current ozone (O 3 ) concentration levels entail significant damages in crop yields around the world. The reaction of the emitted precursors (mostly methane and nitrogen oxides) with solar radiation contribute to O 3 levels that exceed established thresholds for crop damage. This paper shows current and projected (up to 2080) relative yield losses (RYLs) driven by O 3 exposure for different crops and the associated economic damages applying dynamic crop production and prices that are calculated per region and period. We adjust future crop yields in the Global Change Assessment Model (GCAM) to reflect the RYLs and analyze the effects on agricultural markets. We find that the changes (generally reductions) in O 3 precursor emissions in a reference scenario would reduce the agricultural damages, compared to present, for most of the regions, with a few exceptions including India, where higher future O3 concentrations have large negative impacts on crop yields. The annual economic impact of O3 driven losses from 2010-2080 are, in billion US dollars at 2015 prices ($B), 5.0-6.0, 9.8-18.8, 6.7-10.6 and 10.4-12.5 for corn, soybeans, rice and wheat, respectively, with the large losses for wheat and soybeans driven by their comparatively high responses to O 3 . When O 3 effects are explicitly modelled as exogenous yield shocks in future periods, there is a direct impact in future agricultural markets. Therefore, the aggregated net present value (NPV) of crop production would be reduced around by $90.8B at a global level. However, these changes are not distributed evenly across regions, and the net present market value of the crops would increase by up to $118.2B (India) or decrease by up to $59.2B (China).

54 ENVIRONMENTAL SCIENCES↗

Optimisation of root traits to provide enhanced ecosystem services in agricultural systems: A focus on cover crops

Roots are the interface between the plant and the soil and play a central role in multiple ecosystem processes. With intensification of agricultural practices, rhizosphere processes are being disrupted and are causing degradation of the physical, chemical and biotic properties of soil. However, cover crops, a group of plants that provide ecosystem services, can be utilised during fallow periods or used as an intercrop to restore soil health. The effectiveness of ecosystem services provided by cover crops varies widely as very little breeding has occurred in these species. Improvement of ecosystem service performance is rarely considered as a breeding trait due to the complexities and challenges of belowground evaluation. Advancements in root phenotyping and genetic tools are critical in accelerating ecosystem service improvement in cover crops. In this study, we provide an overview of the range of belowground ecosystem services provided by cover crop roots: (1) soil structural remediation, (2) capture of soil resources and (3) maintenance of the rhizosphere and building of organic matter content. Based on the ecosystem services described, we outline current and promising phenotyping technologies and breeding strategies in cover crops that can enhance agricultural sustainability through improvement of root traits.

54 ENVIRONMENTAL SCIENCES↗

Field To Farm Aggregation For Agricultural Systems

The Fields to Farms methodology illustrates the generation of farm parcels from the Crop Data Layer (CDL), a raster dataset containing 133 categories representing various crop types and land uses. This methodology involves two primary steps: Field Delineation and Farm Aggregation. The code specifically addresses the aggregation of pre-delineated fields within a county to form farms, adhering to predefined criteria for farm size categories. It is assumed that the field delineation process, which involves creating vector polygons from CDL raster, has been completed beforehand, possibly through external tools or methods. Upon initialization, the script processes county-level fields, preparing them for farm aggregation. In the Farm Aggregation phase, the code iteratively combines delineated fields into farms based on specified criteria, continuing until the aggregated farm size meets predefined thresholds derived from data from the 2017 National Agricultural Statistics Service (NASS) census. Throughout this iterative process, the script dynamically adjusts the aggregation to ensure alignment with the desired distribution reported by NASS. The resulting output of the script is a GeoDataFrame containing classified farms, which are subsequently saved as GeoPackage files. These files enable further analysis and visualization, facilitating comprehensive exploration of the farm landscape generated through the methodology.

Paudel, Rajiv [Idaho National Laboratory (INL), Id↗

Mars OASIS (Mars Operational Agricultural System for In-Situ Specialization) System Reference Manual

In order to enable long term habitation on planetary surfaces, a means of sustainable food production must be developed. Addressing this need for surface habitats on Mars, the MarsOASIS team has developed a concept for a Martian surface greenhouse for unmanned crop production research as a proof of concept for larger scale food production facilities for manned surface missions. Utilizing in-situ resources such as the Martian atmosphere, sunlight, and UV-C radiation, the greenhouse aims to provide a sustainable method of long-term food production requiring minimal consumable resources. The MarsOASIS system is capable of growing a full life cycle of Outredgeous lettuce with its autonomous control system designed for a unmanned environment, only requiring teleoperation in extreme circumstances. A reduced-scope prototype of MarsOASIS is being developed to test technologies such as a natural/artificial hybrid lighting system, a closed water recycling system, remote teleoperation, and fully autonomous monitoring and control of the greenhouse. The prototype is currently in the final stages of design, with a full demonstration of plant life cycle testing set to occur in summer 2015. Results from this prototype demonstration will help quantify the feasibility of the innovative approaches seen in the MarsOASIS design.

Asa Darnell↗