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Advanced Simulation and Computing: ASC FY24 Implementation Plan

The DOE National Nuclear Security Administration (NNSA) Stockpile Stewardship Program (SSP) is an integrated technical program for maintaining the safety, security, and reliability of the U.S. nuclear stockpile. The SSP incorporates nuclear test data, computational modeling and simulation, and experimental facilities to advance understanding of nuclear weapons. The suite of data analyzed comes from activities including previous nuclear tests, stockpile surveillance, experimental research, and development and engineering programs. This integrated national program requires the continued use of experimental facilities and the computational capabilities to support the SSP missions. These component parts, in addition to an appropriately scaled production capability, enable NNSA to support stockpile requirements. The ultimate goal of the SSP, and thus of the Advanced Simulation and Computing (ASC) program, is to ensure that the U.S. maintains a safe, secure, and effective strategic deterrent. The ASC program is a cornerstone of the SSP, providing simulation capabilities and computational resources to support the annual stockpile assessment and certification process, study advanced nuclear weapons design and manufacturing processes, analyze accident scenarios and weapons aging, and provide the tools to enable stockpile Life Extension Programs (LEPs) and the resolution of Significant Finding Investigations (SFIs). This work requires a balance of resources, including technical staff, hardware, simulation software, and computer science solutions. The ASC program focuses on increasing the predictive capabilities in a three-dimensional (3D) simulation environment while maintaining support to the SSP. The Program continues to improve its unique tools for understanding and solving progressively more difficult stockpile problems (sufficient resolution, dimensionality, and scientific details), and quantifying critical margins and uncertainties. Resolving each issue requires increasingly difficult analyses because the aging process has progressively moved the stockpile further from the original test base. While the focus remains on the U.S. nuclear weapons program, where possible, the Program also enables the use of high-performance computing (HPC) and simulation tools to address broader national security needs, such as foreign nuclear weapon assessments and nuclear counterterrorism. The 2022 Nuclear Posture Review (NPR) calls for NNSA to “deliver a modern, adaptive nuclear security enterprise based on an integrated strategy for risk management, production-based resilience, science and technology innovation, and workforce initiatives.” Furthermore, “NNSA will establish a Science and Technology Innovation Initiative to accelerate the integration of science and technology (S&T) throughout its activities.” Executing this strategy necessitates the continued emphasis on developing and sustaining high-quality scientific and engineering staff, as well as supporting computational and experimental capabilities. These components constitute the foundation of the nuclear weapons program. The continued success of the SSP and LEPs is predicated upon the ability to credibly certify the stockpile, without a return to underground nuclear tests (UGTs). Shortly after the nuclear test moratorium entered into force in 1992, the Accelerated Strategic Computing Initiative (ASCI) was established to provide an extensive simulation capability to underpin stockpile certification. While computing and simulation have always been essential to the success of the nuclear weapons program, the program goal of ASCI was to execute NNSA’s vision of using these tools in support of the stockpile stewardship mission. The ASCI program was essential to the successful demonstration of the SSP, providing critical nuclear weapons simulation and modeling capabilities. ASCI officially evolved into the ASC program in fiscal year (FY) 2005, but the mission remains essentially the same: provide the simulation and computational capabilities that underpin the ability to maintain a safe, secure, effective nuclear weapon stockpile, without returning to underground nuclear testing. The capabilities that the ASC program provides at the national laboratories play a vital role in the nuclear security enterprise and are necessary for fulfilling the stockpile stewardship and life extension requirements outlined for NNSA. The Program develops modern simulation tools that provide insights into stockpile aging issues, provide the computational and simulation tools that enable designers and analysts to certify the current stockpile and life-extended nuclear weapons, and inform the decision-making process when any modifications in nuclear warheads or the associated manufacturing processes are deemed necessary. Furthermore, ASC is enhancing the predictive simulation capabilities that are essential to evaluate weapons effects, design experiments, and ensure test readiness. The ASC program continues to improve its unique tools to solve stockpile problems— with a focus on sufficient resolution, dimensionality, and scientific detail—to enable Quantification of Margins and Uncertainties (QMU) and to resolve the increasingly difficult analyses needed for stockpile stewardship. The needs of the Stockpile Management and Production Modernization programs (formerly Directed Stockpile Work) also drive the requirements for simulation and computational resources. These requirements include planned LEPs, stockpile support activities, and mitigation efforts against the potential for technical surprise. All of the weapons within the current stockpile are in some stage of the life extension process. The simulation and computational capabilities are crucial for successful execution of these life extensions and for ensuring NNSA can certify these life-extended weapons without conducting a UGT.

97 MATHEMATICS AND COMPUTING↗

Asc-Seurat: analytical single-cell Seurat-based web application

Abstract Background Single-cell RNA sequencing (scRNA-seq) has revolutionized the study of transcriptomes, arising as a powerful tool for discovering and characterizing cell types and their developmental trajectories. However, scRNA-seq analysis is complex, requiring a continuous, iterative process to refine the data and uncover relevant biological information. A diversity of tools has been developed to address the multiple aspects of scRNA-seq data analysis. However, an easy-to-use web application capable of conducting all critical steps of scRNA-seq data analysis is still lacking. Summary We present Asc-Seurat, a feature-rich workbench, providing an user-friendly and easy-to-install web application encapsulating tools for an all-encompassing and fluid scRNA-seq data analysis. Asc-Seurat implements functions from the Seurat package for quality control, clustering, and genes differential expression. In addition, Asc-Seurat provides a pseudotime module containing dozens of models for the trajectory inference and a functional annotation module that allows recovering gene annotation and detecting gene ontology enriched terms. We showcase Asc-Seurat’s capabilities by analyzing a peripheral blood mononuclear cell dataset. Conclusions Asc-Seurat is a comprehensive workbench providing an accessible graphical interface for scRNA-seq analysis by biologists. Asc-Seurat significantly reduces the time and effort required to analyze and interpret the information in scRNA-seq datasets.

60 APPLIED LIFE SCIENCES↗

Distinguished honors for LANL ASC program associates: E.O. Lawrence Awards and Laboratory Fellow Appointments

LANL ASC program associates have been honored as recipients of highly competitive scientific achievement awards. Luis Chacon and Dana Dattelbaum received DOE E.O. Lawrence awards in 2021 and 2020, respectively. Tim Germann, Lin Yin, Ricardo Lebensohn and Hui Li were four of nine LANL Laboratory Fellows appointed for membership in 2022. Each of these awardees has been an influential technical leader in computational sciences impacting both the ASC program and international scientific communities.

97 MATHEMATICS AND COMPUTING↗

LANL ASC Vision for Computer Science R&D: "Business-as-usual will not be adequate" [Slides]

Key Messages: ASC has a strong legacy of mission contribution. Looking ahead, strategic drivers continuously push us to be faster, better, and smarter; Evolving mission drivers and technology markets mean that business-as-usual will not be adequate for the ASC Program; Call to action: How will our computer science R&D portfolio evolve to meet these challenges and opportunities?

97 MATHEMATICS AND COMPUTING↗

The ASC-V&V Program [Slides]

The fundamental goal of the ASC-V&V Program is to obtain a quantitative understanding of our customers’ needs and priorities, and use it to assess applicability of numerical models of physical phenomena to physics questions, sensitivity of physics questions to physical phenomena, fidelity of a numerical implementation to the theory, the bounds of validity of theories, fidelity and coverage of experimental data relative to regimes of interest for physics questions, in order to warn users of IC codes and PEM data when simulations may lead to unsupported conclusions, and provide estimates of uncertainties on figures of merit calculated by the simulations.

97 MATHEMATICS AND COMPUTING↗

Final Review of FY23 ASC ATDM L2 Milestone, MRT #8541, ATDM Multiphysics Scaling on EAS-3

As displayed in the FY23 ASC Implementation Plan (IP) and the Milestone Reporting Tool (MRT), the milestone description and completion criteria state: Demonstrate the capability to execute mission-relevant calculations with a multiphysics code from the Ristra project at scale on the pre-El Capitan Early Access System 3 (EAS-3). These calculations must use the GPU hardware available on EAS-3, the AMD MI-250s, to achieve any reasonable performance.

97 MATHEMATICS AND COMPUTING↗

ASC FY2023 Implementation Plan Revision 0

The DOE National Nuclear Security Administration (NNSA) Stockpile Stewardship Program (SSP) is an integrated technical program for maintaining the safety, security, and reliability of the U.S. nuclear stockpile. The SSP incorporates nuclear test data, computational modeling and simulation, and experimental facilities to advance understanding of nuclear weapons. The suite of data analyzed comes from activities including previous nuclear tests, stockpile surveillance, experimental research, and development and engineering programs. This integrated national program requires the continued use of experimental facilities and the computational capabilities to support the SSP missions. These component parts, in addition to an appropriately scaled production capability, enable NNSA to support stockpile requirements. The ultimate goal of the SSP, and thus of the Advanced Simulation and Computing (ASC) Program, is to ensure that the U.S. maintains a safe, secure, and effective strategic deterrent.

97 MATHEMATICS AND COMPUTING↗

LANL ASC FY23 L2 Milestone Description and Completion Criteria [Slides]

In early 2021, the ASC Program decided that Ristra should provide a production code (Moya) for LANL’s mission in the Low Energy-Density Physics application space. At the same time, Ristra should design an environment for rapid development of new codes that can answer new questions on new hardware. We started FY22 by expanding upon our R&D efforts of high-order DG methods for hydrodynamics; Technical & staffing challenges caused us to abandon this for a traditional FV SGH approach, but leveraging modern techniques. Significant changes in FleCSI (v1.4→2.x) have us writing code anew, in a co-design effort with the FleCSI and FleCSI specialization projects.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Surveying the LLNL WSC/CP DevOps Landscape - FY23 DevOps L2: Advanced Simulation and Computing (ASC) L2 Milestone 8542, "Spack Utilization in IC Code Projects”

This L2 milestone is a multifaceted review of DevOps practices across Weapon Simulation and Computing/Computational Physics (WSC/CP) Program, which includes Weapons, ICF, and Engineering simulation codes and supporting libraries. It complements the FY22 Spack/MARBL L2: Advanced Simulation and Computing (ASC) L2 Milestone 7904, “Workflow Portability Across Cloud Services”. The overall goal is to develop a path forward for improving DevOps practices in WSC/CP which will increase developer productivity, improve software quality, and speed up our ability to deliver capabilities to end users.

97 MATHEMATICS AND COMPUTING↗

ASC L2 Milestone Review CTS-2 Production Readiness [Slides]

Open and secure CTS-2 are ready for production capability to include accessibility for users and integration with existing storage and network environment. Hardware testing, early user testing is accomplished, and the systems are generally available for ASC production users.

97 MATHEMATICS AND COMPUTING↗

Recent progress towards incorporating radiochemical analysis in LANL ASC codes

This document summarizes the recent progress towards incorporating charged-particle radiochemical (RadChem) analysis in different LANL codes within the Advanced Scientific Computing (ASC) Program. The first section is focused on xRAGE and the implementation of the necessary physics packages to build an in-line RadChem capability. The second section provides a summary of the current RadChem postprocessing capabilities.

38 RADIATION CHEMISTRY, RADIOCHEMISTRY, AND NUCLEA↗

Viability of S3 Object Storage for the ASC Program at Sandia

Recent efforts at Sandia such as DataSEA are creating search engines that enable analysts to query the institution’s massive archive of simulation and experiment data. The benefit of this work is that analysts will be able to retrieve all historical information about a system component that the institution has amassed over the years and make better-informed decisions in current work. As DataSEA gains momentum, it faces multiple technical challenges relating to capacity storage. From a raw capacity perspective, data producers will rapidly overwhelm the system with massive amounts of data. From an accessibility perspective, analysts will expect to be able to retrieve any portion of the bulk data, from any system on the enterprise network. Sandia’s Institutional Computing is mitigating storage problems at the enterprise level by procuring new capacity storage systems that can be accessed from anywhere on the enterprise network. These systems use the simple storage service, or S3, API for data transfers. While S3 uses objects instead of files, users can access it from their desktops or Sandia’s high-performance computing (HPC) platforms. S3 is particularly well suited for bulk storage in DataSEA, as datasets can be decomposed into object that can be referenced and retrieved individually, as needed by an analyst. In this report we describe our experiences working with S3 storage and provide information about how developers can leverage Sandia’s current systems. We present performance results from two sets of experiments. First, we measure S3 throughput when exchanging data between four different HPC platforms and two different enterprise S3 storage systems on the Sandia Restricted Network (SRN). Second, we measure the performance of S3 when communicating with a custom-built Ceph storage system that was constructed from HPC components. Overall, while S3 storage is significantly slower than traditional HPC storage, it provides significant accessibility benefits that will be valuable for archiving and exploiting historical data. There are multiple opportunities that arise from this work, including enhancing DataSEA to leverage S3 for bulk storage and adding native S3 support to Sandia’s IOSS library.

96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗

ASC Data Science Infrastructure Project June 2023 [Slides]

Data Science Infrastructure (DSI) Project offers a standardized but flexible way of storing data and associated metadata to support AI/ML and data intensive scientific workflows: Establish requirements via use case interviews; Develop DSI framework to support flexible, secure, and accessible data stores tailored to researcher needs; Augment existing institutional frameworks for code management, performance testing and file indexing via automated DSI interfaces; Deploy DSI framework to support key use cases in collaboration with domain scientists.

97 MATHEMATICS AND COMPUTING↗