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At least 19 records

Advancements and Application of Microsecond Synchrotron X-ray Footprinting at the Advanced Light Source

The method of synchrotron X-ray protein footprinting (XF-MS) is used to determine protein conformational changes, folding, protein-protein and protein-ligand interactions, providing information which is often difficult to obtain using X-ray crystallography and other common structural biology methods [1–3]. The technique uses comparative in situ labeling of solvent-accessible side chains by highly reactive hydroxyl radicals (•OH) in buffered aqueous solution under different assay conditions. In regions where a protein is folded or binds a partner, these •OH susceptible sites are inaccessible to solvent, and therefore protected from labeling. The •OH are generated by the ionization of water using high-flux-density X-rays. High-flux density is a key factor for XF-MS labeling because obtaining an adequate steady-state concentration of hydroxyl radical within a short irradiation time is necessary to minimize radiation-induced secondary damage and also to overcome various scavenging reactions that reduce the yield of labeled side chains.

47 OTHER INSTRUMENTATION↗

Chemical Crystallography at the Advanced Light Source

Chemical crystallography at synchrotrons was pioneered at the Daresbury SRS station 9.8. The chemical crystallography beamlines at the Advanced Light Source seek to follow that example, with orders of magnitude more flux than a lab source, and various in situ experiments. This article thus attempts to answer why a chemist would require synchrotron X-rays, to describe the techniques available at the ALS chemical crystallography beamlines, and place the current facilities in a historical context.

36 MATERIALS SCIENCE↗

A New Light for Berkeley Lab—the Advanced Light Source Upgrade

The Advanced Light Source Upgrade Project (ALS-U) will leverage multibend achromat technology to endow the ALS with revolutionary soft X-ray capabilities, and has recently received formal approval to proceed to the preliminary design phase. Soft X-rays are a critical diagnostic tool for enabling the understanding and control of heterogeneous, hierarchical functional materials and chemical synthesis platforms since they can reveal chemical, electronic, and magnetic properties with very high sensitivity. Although the ALS has a strong track record in soft X-ray science over the last 25 years, it, like most other existing storage-ring-based X-ray light sources, lacks the simultaneous combination of nanometer spatial resolution, diverse spectroscopic contrast, and broad temporal sensitivity required to image the location of molecules, ions, and electrons, and to measure how their components migrate and interact to support efficient function. The high coherent flux of the upgraded ALS willenable a suite of tools that encompass 3D nanoscale imaging with high spectral sensitivity over broad space and time scales, dramatically amplifying the already high impact of ALS soft X-ray spectroscopies. Relative to many other synchrotron light source upgrade projects or new facilities being built today, the upgraded ALS will operate at a low electron-beam energy of 2 GeV and a high current of 500 mA, and is optimized for soft X-rays. Its soft X-ray coherent flux will be orders of magnitude higher than that of the existing ALS and beyond the coherent flux of any storage-ring-based light source operating, under construction, or currently planned. In total, the upgraded facility will provide an unprecedented combination of high stability, quasi-continuous radiation, and the highest possible coherent soft X-ray flux.

47 OTHER INSTRUMENTATION↗

Recent results and future plans for a 45 actuator adaptive x-ray optics experiment at the advanced light source

We report on the current status of the Adaptive X-ray Optics project run by Lawrence Livermore National Laboratory (LLNL). LLNL is collaborating with the Advanced Light Source (ALS) to demonstrate a near real-time adaptive X-ray optic. To this end, a custom-built 45 cm long deformable mirror has been installed at ALS beamline 5.3.1 (end station 2) for a two-year period that started in September 2014. We will outline general aspects of the instrument, present results from a recent experimental campaign and touch on future plans for the project.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

The hard x-ray nanotomography microscope at the advanced light source

Beamline 11.3.1 at the Advanced Light Source is a tender/hard (6–17 keV) x-ray bend magnet beamline recently re-purposed with a new full-field, nanoscale transmission x-ray microscope. The microscope is designed to image composite and porous materials possessing a submicrometer structure and compositional heterogeneity that determine materials’ performance and geologic behavior. The theoretical and achieved resolutions are 55 and <100 nm, respectively. The microscope is used in tandem with a <25 nm eccentricity rotation stage for high-resolution volume imaging using nanoscale computed tomography. The system also features a novel bipolar illumination condenser for the illumination of an ~100 μm spot of interest on the sample, followed by a phase-type zone plate magnifying objective of ~52 µm field of view and a phase detection ring. The zone plate serves as the system objective and magnifies the sample with projection onto an indirect x-ray detection system, consisting of a polished single crystal CsI(Tl) scintillator and a range of high-quality Plan Fluorite visible light objectives. The objectives project the final visible light image onto a water-cooled CMOS 2048 × 2048-pixel 2 detector. Here, in this paper, we will discuss the salient features of this instrument and describe early results from imaging the internal three-dimensional microstructure and nanostructure of target materials, including fiber-reinforced composites and geomaterials.

47 OTHER INSTRUMENTATION↗

Application of deep learning methods for beam size control during user operation at the Advanced Light Source

Past research at the Advanced Light Source (ALS) provided a proof-of-principle demonstration that deep learning methods could be effectively employed to compensate for the significant perturbations to the transverse electron beam size induced by user-controlled adjustments of the insertion devices. However, incorporating these methods into the ALS’ daily operations has faced notable challenges. The complexity of the system’s operational requirements and the significant upkeep demands has restricted their sustained application during user operation. Here, we introduce the development of a more robust neural network (NN)-based algorithm that utilizes a novel online fine-tuning approach and its systematic integration into the day-to-day machine operations. Our analysis emphasizes the process of NN model selection, demonstrates the superior performance of the NN-based method over traditional feedback methods, and examines the effectiveness and resilience of the new algorithm during user-operation scenarios. Published by the American Physical Society 2024

43 PARTICLE ACCELERATORS↗

Broadband impedance modeling and single bunch instabilities estimations of the advanced light source upgrade project

We report the Advanced Light Source Upgrade (ALS-U) is a 4th generation diffraction-limited soft x-ray radiation source, consisting of a new accumulator ring (AR) and a new storage ring (SR). In both rings coupling-impedance driven instabilities need careful evaluation to ensure meeting the machine’s high-performance goals. This paper presents the workflow followed in building the impedance models and the beam-stability analysis based on those models. We follow the commonly accepted approach of separating the resistive-wall and the geometric parts of the impedance; the former is obtained by analytical formulas, the latter by numerical electro-magnetic codes (primarily CST Studio software) with perfectly-conducting boundary conditions. Impedance budgets are established and pseudo-Green functions calculated to be used in beam dynamics studies. We also present various ways to cross-check simulation results for reliable impedance modeling. Finally, the crucial single-bunch instability current thresholds for various operation modes are determined and discussed.

07 ISOTOPE AND RADIATION SOURCES↗

X-ray wavefront sensor development at the Advanced Light Source

At Lawrence Berkeley National Laboratory's Advanced Light Source, we are developing x-ray wavefront sensors to support the creation and operation of beamlines with diffraction-limited quality. Our new approach to rapid, intermittent wavefront sensing operates in reflection at glancing incidence angles and is compatible with the high-power densities of modern beamlines. For soft x-ray applications especially, the wavefront sensor can operate upstream of the exit slit in a vertically dispersed beam. This single-shot technique supports lateral shearing interferometry and Hartmann wavefront sensing; it can be adapted to speckle-based techniques as well. The reflected beam is directed to an off-axis YAG crystal that produces scintillated visible light. A small mirror reflects the light to a microscope and camera, and the measured wavefront shape information can be used as feedback to adaptive x-ray mirror elements. A compact array of gratings enables measurement across a broad range of photon energies or wavefront curvatures. We describe recent demonstrations at soft x-ray and hard x-ray wavelengths measuring an adaptive x-ray mirror, and a toroidal focusing mirror.

Goldberg, Kenneth A↗

ALS-ENABLE: creating synergy and opportunity at the Advanced Light Source synchrotron structural biology beamlines

ALS-ENABLE is an integrated NIH P30 resource at the Advanced Light Source synchrotron at Lawrence Berkeley National Laboratory in Berkeley, California, USA. The resource provides a single portal to the combined mature structural biology technologies of macromolecular crystallography, small-angle X-ray scattering and X-ray footprinting mass spectrometry, and includes beamlines 2.0.1, 3.3.1, 4.2.2, 5.0.1, 5.0.2, 5.0.3, 8.2.1, 8.2.2, 8.3.1 and 12.3.1. This paper describes the organizational structure and the technologies of ALS-ENABLE. A case study showcasing the main technologies of the resource applied to the characterization of the SpyCatcher-SpyTag protein system is presented.

Ralston, Corie Y↗

Using X-ray Light to Study Solar Materials at the Advanced Light Source

Shambhavi Pratap, ALS Doctoral Fellow in Residence and a Doctoral Researcher at the Technical University of Munich, will discuss how she studies thin-film solar energy materials using X-rays at the ALS. The Advanced Light Source is a DOE Office of Science User Facility. The International Day of Light is recognized by the United Nations Educational, Scientific and Cultural Organization (UNESCO).

14 SOLAR ENERGY↗

High-efficiency in situ resonant inelastic x-ray scattering (iRIXS) endstation at the Advanced Light Source

In this paper, an endstation with two high-efficiency soft x-ray spectrographs was developed at Beamline 8.0.1 of the Advanced Light Source, Lawrence Berkeley National Laboratory. The endstation is capable of performing soft x-ray absorption spectroscopy, emission spectroscopy, and, in particular, resonant inelastic soft x-ray scattering (RIXS). Two slit-less variable line-spacing grating spectrographs are installed at different detection geometries. The endstation covers the photon energy range from 80 to 1500 eV. For studying transition-metal oxides, the large detection energy window allows a simultaneous collection of x-ray emission spectra with energies ranging from the O K-edge to the Ni L-edge without moving any mechanical components. The record-high efficiency enables the recording of comprehensive two-dimensional RIXS maps with good statistics within a short acquisition time. By virtue of the large energy window and high throughput of the spectrographs, partial fluorescence yield and inverse partial fluorescence yield signals could be obtained for all transition metal L-edges including Mn. Finally and moreover, the different geometries of these two spectrographs (parallel and perpendicular to the horizontal polarization of the beamline) provide contrasts in RIXS features with two different momentum transfers.

47 OTHER INSTRUMENTATION↗

X-Ray Diffraction under Extreme Conditions at the Advanced Light Source

The more than a century-old technique of X-ray diffraction in either angle or energy dispersive mode has been used to probe materials’ microstructure in a number of ways, including phase identification, stress measurements, structure solutions, and the determination of physical properties such as compressibility and phase transition boundaries. The study of high-pressure and high-temperature materials has strongly benefitted from this technique when combined with the high brilliance source provided by third generation synchrotron facilities, such as the Advanced Light Source (ALS) (Berkeley, CA, USA). Here we present a brief review of recent work at this facility in the field of X-ray diffraction under extreme conditions, including an overview of diamond anvil cells, X-ray diffraction, and a summary of three beamline capabilities conducting X-ray diffraction high-pressure research in the diamond anvil cell.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Turning on Light at the Advanced Light Source

Angelic Lucero, Accelerator and Floor Operator at the ALS, will talk about the process involved in “turning on the light” that drives experiments at the ALS. The Advanced Light Source is a DOE Office of Science User Facility. The International Day of Light is recognized by the United Nations Educational, Scientific and Cultural Organization (UNESCO).

43 PARTICLE ACCELERATORS↗

Using Light for Research at the Advanced Light Source

Ziheng Yao, ALS Doctoral Fellow in Residence and a Ph.D. student at Stony Brook University, will share how he uses infrared light at the ALS to study a range of samples, including battery and biological materials, meteors, and more. The Advanced Light Source is a DOE Office of Science User Facility. The International Day of Light is recognized by the United Nations Educational, Scientific and Cultural Organization (UNESCO).

36 MATERIALS SCIENCE↗

Accelerating Advanced Light Source Science Through Multi-Facility HPC Workflows

Synchrotron light sources support a wide array of techniques to investigate materials, often producing complex, high-volume data that challenge traditional workflows. At the Advanced Light Source (ALS), we developed infrastructure to move microtomography data over ESnet to ALCF and NERSC, where CPU- and GPU-based algorithms generate 3D reconstructed volumes of experimental samples. We employ two data movement and reconstruction models: real-time processing as data streams directly to NERSC compute nodes, and automated file transfer to NERSC and ALCF file systems. The streaming pipeline provides users with feedback in under ten seconds, while the file-based workflow produces high-quality reconstructions suitable for deeper analysis in 20-30 minutes. This infrastructure enables users to utilize HPC resources without direct access to backend systems. We plan to extend this architecture to more endstations, supporting our beamline scientists and users.

Abramov, David↗

A cantilevered liquid-nitrogen-cooled silicon mirror for the Advanced Light Source Upgrade

This paper presents a novel cantilevered liquid-nitrogen-cooled silicon mirror design for the first optic in a new soft X-ray beamline that is being developed as part of the Advanced Light Source Upgrade (ALS-U) (Lawrence Berkeley National Laboratory, USA). The beamline is optimized for photon energies between 400 and 1400 eV with full polarization control. Calculations indicate that, without correction, this design will achieve a Strehl ratio greater than 0.85 for the entire energy and polarization ranges of the beamline. With a correction achieved by moving the focus 7.5 mm upstream, the minimum Strehl ratio is 0.99. This design is currently the baseline plan for all new ALS-U insertion device beamlines.

47 OTHER INSTRUMENTATION↗