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At least 1,783 records · Page 99

A Re-Evaluation of African Swine Fever Genotypes Based on p72 Sequences Reveals the Existence of Only Six Distinct p72 Groups

The African swine fever virus (ASFV) is currently causing a world-wide pandemic of a highly lethal disease in domestic swine and wild boar. Currently, recombinant ASF live-attenuated vaccines based on a genotype II virus strain are commercially available in Vietnam. With 25 reported ASFV genotypes in the literature, it is important to understand the molecular basis and usefulness of ASFV genotyping, as well as the true significance of genotypes in the epidemiology, transmission, evolution, control, and prevention of ASFV. Historically, genotyping of ASFV was used for the epidemiological tracking of the disease and was based on the analysis of small fragments that represent less than 1% of the viral genome. The predominant method for genotyping ASFV relies on the sequencing of a fragment within the gene encoding the structural p72 protein. Genotype assignment has been accomplished through automated phylogenetic trees or by comparing the target sequence to the most closely related genotyped p72 gene. To evaluate its appropriateness for the classification of genotypes by p72, we reanalyzed all available genomic data for ASFV. We conclude that the majority of p72-based genotypes, when initially created, were neither identified under any specific methodological criteria nor correctly compared with the already existing ASFV genotypes. Based on our analysis of the p72 protein sequences, we propose that the current twenty-five genotypes, created exclusively based on the p72 sequence, should be reduced to only six genotypes. To help differentiate between the new and old genotype classification systems, we propose that Arabic numerals (1, 2, 8, 9, 15, and 23) be used instead of the previously used Roman numerals. Furthermore, we discuss the usefulness of genotyping ASFV isolates based only on the p72 gene sequence.

59 BASIC BIOLOGICAL SCIENCES↗

Site-Selective Polyolefin Hydrogenolysis on Atomic Ru for Methanation Suppression and Liquid Fuel Production

Catalytic hydrogenolysis of end-of-life polyolefins can produce value-added liquid fuels and therefore holds great promises in plastic waste reuse and environmental remediation. The major challenge limiting the recycling economic benefit is the severe methanation (usually >20%) induced by terminal C–C cleavage and fragmentation in polyolefin chains. Here, we overcome this challenge by demonstrating that Ru single-atom catalyst can effectively suppress methanation by inhibiting terminal C–C cleavage and preventing chain fragmentation that typically occurs on multi-Ru sites. The Ru single-atom catalyst supported on CeO 2 shows an ultralow CH 4 yield of 2.2% and a liquid fuel yield of over 94.5% with a production rate of 314.93 g fuels g Ru -1 h -1 at 250 °C for 6 h. Such remarkable catalytic activity and selectivity of Ru single-atom catalyst in polyolefin hydrogenolysis offer immense opportunities for plastic upcycling.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Clarissa Family Age from the Yarkovsky Effect Chronology

The Clarissa family is a small collisional family composed of primitive C-type asteroids. It is located in a dynamically stable zone of the inner asteroid belt. In this work we determine the formation age of the Clarissa family by modeling planetary perturbations as well as thermal drift of family members due to the Yarkovsky effect. Simulations were carried out using the SWIFT-RMVS4 integrator modified to account for the Yarkovsky and Yarkovsky–O’Keefe–Radzievskii–Paddack (YORP) effects. We ran multiple simulations starting with different ejection velocity fields of fragments, varying proportion of initially retrograde spins, and also tested different Yarkovsky/YORP models. Our goal was to match the observed orbital structure of the Clarissa family which is notably asymmetrical in the proper semimajor axis, a {sub p}. The best fits were obtained with the initial ejection velocities ≲20 m s{sup −1} of diameter D ≃ 2 km fragments, ∼4:1 preference for spin-up by YORP, and assuming that ≃80% of small family members initially had retrograde rotation. The age of the Clarissa family was found to be t {sub age} = 56 ± 6 Myr for the assumed asteroid density ρ = 1.5 g cm{sup −3}. Small variation of density to smaller or larger value would lead to slightly younger or older age estimates. This is the first case where the Yarkovsky effect chronology has been successfully applied to an asteroid family younger than 100 Myr.

79 ASTRONOMY AND ASTROPHYSICS↗

Evaluating Short-warning Mitigation via Intentional Robust Disruption of a Hypothetical Impact of Asteroid 2023 NT1

We investigate various short-warning mitigation scenarios via fragmentation for a hypothetical impact of asteroid 2023 NT1, a near-Earth object (NEO) that was discovered on 2023 July 15, two days after its closest approach to Earth on July 13. The asteroid passed by Earth within ∼0.25 lunar distances, with a closest approach of ∼1 × 10 5 km and a velocity of 11.27 km s −1 . Its size remains largely uncertain, with an estimated diameter range of 26–58 m and a most probable estimate of 34 m (JPL Sentry, 2023 September 15; weighted by the NEO size frequency distribution). If 2023 NT1 had collided with Earth, it could have caused significant local damage. Assuming a spherical asteroid with a diameter of 34 m, uniform density of 2.6 g cm −3 , and impact velocity of 15.59 km s −1 , a collision would have yielded an estimated impact energy of ∼1.5 Mt, approximately 3 times the energy of the Chelyabinsk airburst in 2013. We analyze the effectiveness of mitigation via intentional robust disruption for objects similar to 2023 NT1. We utilize Pulverize It (PI), a NASA Innovative Advanced Concepts study of planetary defense via fragmentation, to model potential mitigation scenarios through simulations of hypervelocity asteroid disruption and atmospheric ground effects in the case of a terminal defense mode. Simulations suggest that PI is an effective multimodal approach for planetary defense that can operate in extremely short interdiction modes, in addition to long interdiction timescales with extended warning. Our simulations support the proposition that threats like 2023 NT1 can be effectively mitigated with intercepts of 1 day (or less) prior to impact, yielding minimal to no ground damage.

Asteroids↗

Effects of Dust Coagulation on Streaming Instability

Abstract Streaming instability (SI) in dust has long been thought to be a promising process in triggering planetesimal formation in the protoplanetary disks (PPDs). In this study, we present the first numerical investigation that models the SI in the vertically stratified disk together with the dust coagulation process. Our simulations reveal that, even with the initially small dust sizes, because dust coagulation promotes dust size growth, SI can eventually still be triggered. Specifically, dust coagulation, limited only by dust fragmentation, broadens the parameter boundaries obtained from previous SI studies using single dust species. We describe the various stages of dust dynamics along with their size evolution and explore the impact of different dust fragmentation velocities. Implications of these results for realistic PPDs are also discussed.

79 ASTRONOMY AND ASTROPHYSICS↗

TMD Handbook

This handbook provides a comprehensive review of transverse-momentum-dependent parton distribution functions and fragmentation functions, commonly referred to as transverse momentum distributions (TMDs). TMDs describe the distribution of partons inside the proton and other hadrons with respect to both their longitudinal and transverse momenta. They provide unique insight into the internal momentum and spin structure of hadrons, and are a key ingredient in the description of many collider physics cross sections. Understanding TMDs requires a combination of theoretical techniques from quantum field theory, nonperturbative calculations using lattice QCD, and phenomenological analysis of experimental data. The handbook covers a wide range of topics, from theoretical foundations to experimental analyses, as well as recent developments and future directions. It is intended to provide an essential reference for researchers and graduate students interested in understanding the structure of hadrons and the dynamics of partons in high energy collisions.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Comment on “Review of experimental studies of secondary ice production” by Korolev and Leisner (2020)

Abstract. This is a comment on the review by Korolev and Leisner (2020, hereafter KL2020). The only two laboratory/field studies ever to measure the breakup in ice–ice collisions for in-cloud conditions were negatively criticised by KL2020, as were our subsequent theoretical and modelling studies informed by both studies. First, hypothetically, even without any further laboratory experiments, such theoretical and modelling studies would continue to be possible, based on classical mechanics and statistical physics. They are not sensitive to the accuracy of lab data for typical situations, partly because the nonlinear explosive growth of ice concentrations continues until some maximum concentration is reached. To a degree, the same final concentration is expected regardless of the fragment number per collision. Second, there is no evidence that both lab/field observational studies characterising fragmentation in ice–ice collisions are either mutually conflicting or erroneous such that they cannot be used to represent this breakup in numerical models, contrary to the review. The fact that the ice spheres of one experiment were hail sized (2 cm) is not a problem if a universal theoretical formulation, such as ours, with fundamental dependencies, is informed by it. Although both lab/field studies involved head-on collisions, rotational kinetic energy for all collisions generally is only a small fraction of the initial collision kinetic energy (CKE) anyway. Although both lab/field experiments involved fixed targets, that is not a problem since the fixing of the target is represented via CKE in any energy-based formulation such as ours. Finally, scaling analysis suggests that the breakup of ice during sublimation can make a significant contribution to ice enhancement in clouds, again contrary to the impression given by the review.

54 ENVIRONMENTAL SCIENCES↗

An attribution of the low single-scattering albedo of biomass burning aerosol over the southeastern Atlantic

Abstract. Aerosol over the remote southeastern Atlantic is some of the most sunlight-absorbing aerosol on the planet: the in situ free-tropospheric single-scattering albedo at the 530 nm wavelength (SSA530 nm) ranges from 0.83 to 0.89 within ORACLES (ObseRvations of Aerosols above CLouds and their intEractionS) aircraft flights from late August–September. Here we seek to explain the low SSA. The SSA depends strongly on the black carbon (BC) number fraction, which ranges from 0.15 to 0.4. Low organic aerosol (OA)-to-BC mass ratios of 8–14 and modified combustion efficiency values >0.975 point indirectly to the dry, flame-efficient combustion of primarily grass fuels, with back trajectories ending in the miombo woodlands of Angola. The youngest aerosol, aged 4–5 d since emission, occupied the top half of a 5 km thick plume sampled directly west of Angola with a vertically consistent BC:ΔCO (carbon monoxide) ratio, indicating a homogenization of the source emissions. The younger aerosol, transported more quickly off of the continent by stronger winds, overlaid older, slower-moving aerosol with a larger mean particle size and fraction of BC-containing particles. This is consistent with ongoing gas condensation and the coagulation of smaller non-BC particles upon the BC-containing particles. The particle volumes and OA:BC mass ratios of the older aerosol were smaller, attributed primarily to evaporation following fragmentation, instead of dilution or thermodynamics. The CLARIFY (CLoud–Aerosol–Radiation Interaction and Forcing: Year 2017) aircraft campaign sampled aerosols that had traveled further to reach the more remote Ascension Island. CLARIFY reported higher BC number fractions, lower OA:BC mass ratios, and lower SSA yet larger mass absorption coefficients compared to this study's. Values from one ORACLES 2017 flight, held midway to Ascension Island, are intermediate, confirming the long-range changes. Overall the data are most consistent with continuing oxidation through fragmentation releasing aerosols that subsequently enter the gas phase, reducing the OA mass, rather than evaporation through dilution or thermodynamics. The data support the following best fit: SSA530nm=0.801+0055⋅(OA:BC) (r=0.84). The fires of southern Africa emit approximately one-third of the world's carbon; the emitted aerosols are distinct from other regional smoke emissions, and their composition needs to be represented appropriately to realistically depict regional aerosol radiative effects.

54 ENVIRONMENTAL SCIENCES↗

Simulations of the collection of mesospheric dust particles with a rocket instrument

We investigate the collection of dust particles in the mesosphere with the MESS (MEteoric Smoke Sampler) instrument that is designed to fly on a sounding rocket. We assume that the ice particles that form in the polar mesosphere between 80 and 85 km altitude in summer contain meteoric smoke particles; and these should be collected with MESS. The instrument consists of a collection device with an opening and closure mechanism, as well as an attached conic funnel which increases the sampling area in comparison to the collection area. Dust particles are collected either directly after passing through the instrument or indirectly after colliding with and fragmenting on the funnel wall. We calculate the dust and fragment trajectories in the detector to determine the collection efficiency for different particle sizes, rocket velocities, and heights, and we find the final velocities and the temperatures of the particles. The considered design has a sampling area of 62.78 mm diameter and a collection area of 20 mm diameter. For the conditions at the rocket launch site in Andøya, Norway, we estimate the collection of meteoric smoke particles contained in the ice particles to be ~10 12 –10 14 amu mm –2 . The estimated temperatures suggest that the composition of these smoke particles is not affected by the collection. Our calculations also show that keeping the instrument open above 85 km altitude increases the amount of small smoke particles that are directly collected. The directly collected smoke particles are heated as they decelerate, which can affect their composition.

47 OTHER INSTRUMENTATION↗

Enhancing characterization of organic nitrogen components in aerosols and droplets using high-resolution aerosol mass spectrometry

Abstract. This study aims to enhance the understanding and application of the Aerodyne high-resolution aerosol mass spectrometer (HR-AMS) for the comprehensive characterization of organic nitrogen (ON) compounds in aerosol particles and atmospheric droplets. To achieve this goal, we analyzed 75 N-containing organic compounds, representing a diverse range of ambient non-organonitrate ON (NOON) types, including amines, amides, amino acids, N heterocycles, protein, and humic acids. Our results show that NOON compounds can produce significant levels of NHx+ and NOx+ ion fragments, which are typically recognized as ions representative of inorganic nitrogen species. We also identified the presence of CH2N+ at m/z = 28.0187, an ion fragment rarely quantified in ambient datasets due to substantial interference from N2+. As a result, the utilization of an updated calibration factor of 0.79 is necessary for accurate NOON quantification via the HR-AMS. We also assessed the relative ionization efficiencies (RIEs) for various NOON species and found that the average RIE for NOON compounds (1.52 ± 0.58) aligns with the commonly used default value of 1.40 for organic aerosol. Moreover, through a careful examination of the HR-AMS mass spectral features of various NOON types, we propose fingerprint ion series that can aid the NOON speciation analysis. For instance, the presence of CnH2n+2N+ ions is closely linked with amines, with CH4N+ indicating primary amines, C2H6N+ suggesting secondary amines, and C3H8N+ representing tertiary amines. CnH2nNO+ ions (especially for n values of 1–4) are very likely derived from amides. The co-existence of three ions, C2H4NO2+, C2H3NO+, and CH4NO+, serves as an indicator for the presence of amino acids. Additionally, the presence of CxHyN2+ ions indicates the occurrence of 2N-heterocyclic compounds. Notably, an elevated abundance of NH4+ is a distinct signature for amines and amino acids, as inorganic ammonium salts produce only negligible amounts of NH4+ in the HR-AMS. Finally, we quantified the NOON contents in submicron particles (PM1) and fog water in Fresno, California, and PM1 in New York City (NYC). Our results revealed the substantial presence of amino compounds in both Fresno and NYC aerosols, whereas concurrently collected fog water in Fresno contained a broader range of NOON species, including N-containing aromatic heterocycle (e.g., imidazoles) and amides. These findings highlight the significant potential of employing the widespread HR-AMS measurements of ambient aerosols and droplets to enhance our understanding of the sources, transformation processes, and environmental impacts associated with NOON compounds in the atmosphere.

Ge, Xinlei (ORCID:0000000195316478)↗

Enhancing characterization of organic nitrogen components in aerosols and droplets using high-resolution aerosol mass spectrometry

This study aims to enhance the understanding and application of the Aerodyne high-resolution aerosol mass spectrometer (HR-AMS) for comprehensive characterization of organic nitrogen (ON) compounds in aerosol particles and atmospheric droplets. To achieve this, we analyzed seventy-five N-containing organic compounds, representing a diverse range of ambient ON types, including amines, amides, amino acids, N-heterocycles, protein, and humic acids. Our results show that ON compounds can produce significant levels of NH x + and NO x + ion fragments, which are typically recognized as ions representative of inorganic nitrogen species. We also discovered the presence of CH 2 N + at m/z = 28.0187, an ion fragment that is rarely quantified in ambient datasets due to substantial interference from air-related N 2 + . As a result, we determined that an updated calibration factor of 0.79 is necessary to accurately quantify ON content using aerosol mass spectrometry. We also assessed the relative ionization efficiencies (RIEs) for different ON species and found that the average RIE of ON compounds (1.52 ± 0.58) aligns with the commonly used default value of 1.40 for organic aerosol (OA). Moreover, through a careful examination of the HR-AMS mass spectral features of various ON types, we propose fingerprint ion series that can aid the ON speciation analysis. The presence of C n H 2n+2 N + ions is closely linked with amines, with CH 4 N + indicating primary amines, C 2 H 6 N + suggesting secondary amines, and C 3 H 8 N + representing tertiary amines. C n H 2n NO + ions (especially for n values of 1–4) are very likely derived from amides. The co-existence of three ions, C 2 H 4 NO 2 + , C 2 H 3 NO + , and CH 4 NO + , serves as an indicator for the presence of amino acids. Additionally, the presence of C x H y N 2 + ions indicates the occurrence of 2N-heterocyclic compounds. Notably, an elevated abundance of NH 4 + is a distinct signature for amines and amino acids, as inorganic ammonium salts produce only negligible amounts of NH 4 + in HR-AMS. Finally, we quantified the ON contents in submicron particles (PM 1 ) and fog waters in Fresno, California and PM 1 in New York City (NYC). Our results revealed the substantial presence of amino compounds in both Fresno and NYC aerosols, whereas concurrently collected fog waters contained a broader range of ON species, including N-containing aromatic heterocycle (e.g., imidazoles) and amides. These findings highlight the significant potential of employing the widespread HR-AMS measurements of ambient aerosols and droplets to enhance our understanding of the sources, transformation processes, and environmental impacts associated with ON compounds in the atmosphere.

54 ENVIRONMENTAL SCIENCES↗

Structural basis of malaria transmission blockade by a monoclonal antibody to gamete fusogen HAP2

HAP2 is a transmembrane gamete fusogen found in multiple eukaryotic kingdoms and is structurally homologous to viral class II fusogens. Studies in Plasmodium have suggested that HAP2 is an attractive target for vaccines that block transmission of malaria. HAP2 has three extracellular domains, arranged in the order D2, D1, and D3. Here, we report monoclonal antibodies against the D3 fragment of Plasmodium berghei HAP2 and crystal structures of D3 in complex with Fab fragments of two of these antibodies, one of which blocks fertilization of Plasmodium berghei in vitro and transmission of malaria in mosquitoes. We also show how this Fab binds the complete HAP2 ectodomain with electron microscopy. The two antibodies cross-react with HAP2 among multiple plasmodial species. Our characterization of the Plasmodium D3 structure, HAP2 ectodomain architecture, and mechanism of inhibition provide insights for the development of a vaccine to block malaria transmission.

59 BASIC BIOLOGICAL SCIENCES↗

Distribution of Apollo 15 lunar samples: News release

More than 2200 Apollo 15 samples and polished thin sections weighing a total of about three kilograms will be distributed to 201 principal investigators for study during the next year. The scientific investigations will provide detailed information on the samples' mineralogy, petrology, chemistry, age, and history and on the effects of micrometeorite impacts, solar radiation, and cosmic ray bombardment. Preliminary examination of samples show the Apollo 15 material to be of three types: dark colored iron-rich basalts associated with mare and rille formation; a few basalts enriched in feldspar collected near the Apennine front; and light colored fragmental rocks or breccias consisting of soil-like materials which were cemented together or of rock fragments which were welded together by partial remelting.

Dick, L.↗

Galactic cosmic ray heavy primary secondary doses

Results of a calculation which estimates the heavy primary secondary doses from cosmic ray interaction data are reported. The incident galactic cosmic ray heavy primary spectrum is represented as the sum of helium, nitrogen, magnesium, and iron components. The incident iron nuclei are allowed to fragment into lesser Z secondaries, which are assumed to travel in the same direction and start with the same energy per nucleon as the interacting primary. The total emergent particle energy spectra and dose are then presented for the galactic heavy primary spectrum incident on aluminum and tissue slabs. The importance of the fragmentation parameters assumed is also evaluated. The total dose from the heavy primaries and their secondaries is found to be reduced by only a factor of two in 20 g/sq cm of shielding.

Wilkinson, M. C.↗

Petrological character of the Luna 16 sample from Mare Fecunditatis.

A total number of 1858 lithic and vitreous fragments from the Luna 16 core-tube sample are classified. The fragments were taken from soil fractions ranging in size from 150 to 425 microns at levels A and G. No important differences are observed between the proportions of particle types in levels A and G, nor between the soils of Luna 16 and those from the Apollo 11 landing site in the nearby Mare Tranquillitatis.

Wood, J. A.↗

Volcanic petrology and geologic history of Northeast Bank, Southern California Borderland.

Basaltic rocks, hyaloclastites, and fossil fragments incorporated in volcanic material, dredged from the flanks of Northeast Bank on the Southern California Borderland, show trace element abundances typical of eastern Pacific basin alkali basalts but enriched (880 ppm) Ba. The fossil fragments, incorporated in breccia, hyaloclastite, and agglomerate, include a fauna which lived in less than 50 m of water, as well as forms from the intertidal zone. Bathymetry of the bank and the depth range of the dredged zone indicate that there has been at least 300 or as much as 500 m subsidence since the volcanism which incorporated the fauna in volcanic material. Isostatic adjustments due to crustal load of the bank can account for this subsidence.

Hawkins, J. W.↗

Chemical composition of sawdust from lunar rock 12013 and comparison of a Java tektite with the rock.

Abundances of 11 major and minor elements and 11 trace elements have been determined by instrumental neutron activation analysis of two Apollo 12013 rock fragments, a sample of rock 12013,17 sawdust, and a Java tektite (J2). Although the abundances of major elements in tektite J2 are similar to those of rock 12013, comparison of the minor and trace elements shows that no fragment of sawdust or rock 12013 that has been analyzed to date is chemically similar to tektite glass. Rock sawdust is representative of ?whole rock' composition only if the amount of contamination from the sawing process is known. After appropriate correction for saw wire contamination, analyses of sawdust yield fairly accurate averaged elemental compositions of complex clastic lunar and other rocks.

Showalter, D. L.↗

Rubidium-strontium isotope characteristics of lunar soils.

Evaluation of K, Rb, and Sr concentrations and Sr isotopic composition for hand-picked fractions from the 175- to 1000-micron Apollo 12 fines samples 12032 and 12070 and for two less than 1-mm bulk fines samples, 14163,160 and 14259,21, from Apollo 14 which have model Rb-Sr ages close to 4.6 b.y. The Apollo 14 data indicate the presence of a radiogenic component of 4.6 b.y. model age like the Apollo 12 fines, confirming a very early geochemical differentiation of the moon. Progressively greater enrichment in K and Rb relative to the bulk fines is shown by microbreccia from both samples, ropy brown glass from 12032, and light-grey lithic fragments from 12032. Model Rb-Sr ages, based on a basaltic achondrite initial ratio, are generally close to 4.6 b.y. The microbreccias and ropy brown glass have model ages that are younger but indistinguishable from 4.6 b.y. within analytical error. Light grey lithic fragments from 12032 have a model age of 5.1 b.y. and must have had a multistage Rb/Sr evolution. The data are broadly compatible with two-component mixing models of the Apollo 12 fines. On the basis of modal composition, the microbreccia is considered the major nonbasaltic constituent.

Cliff, R. A.↗