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At least 1,783 records · Page 99

The Presence of Virus Neutralizing Antibodies Is Highly Associated with Protection against Virulent Challenge in Domestic Pigs Immunized with ASFV live Attenuated Vaccine Candidates

African swine fever virus (ASFV) is currently producing a pandemic affecting a large area of Eurasia, and more recently, the Dominican Republic in the Western Hemisphere. ASFV is a large and structurally complex virus with a large dsDNA genome encoding for more than 150 genes. Live attenuated virus strains can induce protection in domestic swine against disease produced by homologous virulent parental viruses. The roles of the different immune mechanisms induced by the attenuated strains in protection still need to be understood. In particular, the role of ASFV neutralizing antibody in protection still is an important controversial issue to be elucidated. Here we present the development of a novel methodology to detect virus neutralizing antibodies based on the reduction of virus infectivity in a Vero cell adapted ASFV strain. The described method was used to assess levels of virus neutralizing antibodies in domestic swine inoculated with live attenuated ASFV. Results demonstrated a high association between the presence of virus neutralizing antibodies and protection in 84 animals immunized with the recombinant vaccine candidates ASFV-G-Δ9GL/ΔUK or ASFV-G-ΔI177L. To our knowledge, this is the first report demonstrating an association between virus neutralizing antibodies and protection against virulent challenge in such a large number of experimental individuals.

59 BASIC BIOLOGICAL SCIENCES↗

Recombinant Vaccine Strain ASFV-G-Δ9GL/ΔUK Produced in the IPKM Cell Line Is Genetically Stable and Efficacious in Inducing Protection in Pigs Challenged with the Virulent African Swine Fever Virus Field Isolate Georgia 2010

We have previously reported that the recombinant African Swine Fever (ASF) vaccine candidate ASFV-G-Δ9GL/ΔUK efficiently induces protection in domestic pigs challenged with the virulent strain Georgia 2010 (ASFV-G). As reported, ASFV-G-Δ9GL/ΔUK induces protection, while intramuscularly (IM), administered at doses of 10 4 HAD 50 or higher, prevents ASF clinical disease in animals infected with the homologous ASFV g strain. Like other recombinant vaccine candidates obtained from ASFV field isolates, ASFV-G-Δ9GL/ΔUK stocks need to be produced in primary cultures of swine macrophages, which constitutes an important limitation in the production of large virus stocks at the industrial level. Here, we describe the development of ASFV-G-Δ9GL/ΔUK stocks using IPKM (Immortalized Porcine Kidney Macrophage) cells, which are derived from swine macrophages. We show that ten successive passages of ASFV-G-Δ9GL/ΔUK in IPKM cells induced small changes in the virus genome. The produced virus, ASFV-G-Δ9GL/ΔUKp10, presented a similar level of replication in swine macrophages cultures to that of the original ASFV-G-Δ9GL/ΔUK (ASFV-G-Δ9GL/ΔUKp0). The protective efficacy of ASFV-G-Δ9GL/ΔUKp10 was evaluated in pigs that were IM-inoculated with either 10 4 or 10 6 HAD 50 of ASFV-G-Δ9GL/ΔUKp10. While animals inoculated with 10 4 HAD 50 present a partial protection against the experimental infection with the virulent parental virus ASFV-G, those inoculated with 10 6 HAD 50 were completely protected. Therefore, as was just recently reported for another ASF vaccine candidate, ASFV-G-ΔI177L, IPKM cells are an effective alternative to produce stocks for vaccine strains which only grow in swine macrophages.

60 APPLIED LIFE SCIENCES↗

Non-Carbon 2D Materials-Based Field-Effect Transistor Biosensors: Recent Advances, Challenges, and Future Perspectives

In recent years, field-effect transistors (FETs) have been very promising for biosensor applications due to their high sensitivity, real-time applicability, scalability, and prospect of integrating measurement system on a chip. Non-carbon 2D materials, such as transition metal dichalcogenides (TMDCs), hexagonal boron nitride (h-BN), black phosphorus (BP), and metal oxides, are a group of new materials that have a huge potential in FET biosensor applications. In this work, we review the recent advances and remarkable studies of non-carbon 2D materials, in terms of their structures, preparations, properties and FET biosensor applications. We will also discuss the challenges facing non-carbon 2D materials-FET biosensors and their future perspectives.

2D-materials↗

Can Collaboration Succeed in Siting a Spent Nuclear Fuel Facility in the United States?—A Challenge in Political Sustainability

We examine the U.S. Department of Energy (DOE)’s collaborative process to locate, build, and operate one or more federal consolidated interim storage facilities (FCISFs) for commercial U.S. spent nuclear fuel—instead of continuing to store the material at over 70 nuclear reactor sites. Technocratic siting of nuclear facilities in the U.S., most of which did not involve meaningful public participation, was not successful. We consider increasing pressure to find at least one FCISF site, as well as the critical role of trust in engaging communities and reaching agreement—leading some observers to assert that DOE is in the “trust building business”, not the siting business. We present case studies with the following: (1) illustrating community engagement that led to a more satisfactory outcome than had been anticipated (Fernald); (2) a planned voluntary process that failed to produce an operating CISF (Office of the Nuclear Waste Negotiator); and (3) a site that demonstrates the ongoing need for negotiations to keep a site open and operational (Waste Isolation Pilot Plant). The essay concludes with the observation that a collaboration-based siting effort can succeed in the U.S., but that five main challenges—related to trust and requiring patience—will need to be addressed.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

The Role of Synthetic Biology in Atmospheric Greenhouse Gas Reduction: Prospects and Challenges

The long atmospheric residence time of CO 2 creates an urgent need to add atmospheric carbon drawdown to CO 2 regulatory strategies. Synthetic and systems biology (SSB), which enables manipulation of cellular phenotypes, offers a powerful approach to amplifying and adding new possibilities to current land management practices aimed at reducing atmospheric carbon. The participants (in attendance: Christina Agapakis, George Annas, Adam Arkin, George Church, Robert Cook-Deegan, Charles DeLisi, Dan Drell, Sheldon Glashow, Steve Hamburg, Henry Jacoby, Henry Kelly, Mark Kon, Todd Kuiken, Mary Lidstrom, Mike MacCracken, June Medford, Jerry Melillo, Ron Milo, Pilar Ossorio, Ari Patrinos, Keith Paustian, Kristala Jones Prather, Kent Redford, David Resnik, John Reilly, Richard J. Roberts, Daniel Segre, Susan Solomon, Elizabeth Strychalski, Chris Voigt, Dominic Woolf, Stan Wullschleger, and Xiaohan Yang) identified a range of possibilities by which SSB might help reduce greenhouse gas concentrations and which might also contribute to environmental sustainability and adaptation. These include, among other possibilities, engineering plants to convert CO 2 produced by respiration into a stable carbonate, designing plants with an increased root-to-shoot ratio, and creating plants with the ability to self-fertilize. A number of serious ecological and societal challenges must, however, be confronted and resolved before any such application can be fully assessed, realized, and deployed.

59 BASIC BIOLOGICAL SCIENCES↗

COSMOGENIC NEUTRINOS CHALLENGE THE COSMIC-RAY PROTON DIP MODEL

The origin and composition of ultra-high-energy cosmic rays (UHECRs) remain a mystery. The proton dip model describes their spectral shape in the energy range above 10{sup 9} GeV by pair production and photohadronic interactions with the cosmic microwave background. The photohadronic interactions also produce cosmogenic neutrinos peaking around 10{sup 9} GeV. We test whether this model is still viable in light of recent UHECR spectrum measurements from the Telescope Array experiment and upper limits on the cosmogenic neutrino flux from IceCube. While two-parameter fits have been already presented, we perform a full scan of the three main physical model parameters: source redshift evolution, injected proton maximal energy, and spectral index. We find qualitatively different conclusions compared to earlier two-parameter fits in the literature: a mild preference for a maximal energy cutoff at the sources instead of the Greisen–Zatsepin–Kuzmin cutoff, hard injection spectra, and strong source evolution. The predicted cosmogenic neutrino flux exceeds the IceCube limit for any parameter combination. As a result, the proton dip model is challenged at more than 95% C.L. This is strong evidence against this model independent of mass composition measurements.

79 ASTRONOMY AND ASTROPHYSICS↗

CHALLENGING SOME CONTEMPORARY VIEWS OF CORONAL MASS EJECTIONS. II. THE CASE FOR ABSENT FILAMENTS

When a coronal mass ejection (CME) appears in a coronagraph it often exhibits three parts. This “classic” three-part configuration consists of a bright leading edge, a dark circular- or teardrop-shaped cavity, and a bright core within the cavity. It is generally accepted that these are manifestations of coronal plasma pileup, the driving magnetic flux rope, and the associated eruptive filament, respectively. The latter has become accepted by the community since coronagraph CMEs have been commonly associated with eruptive filaments for over 40 years. In this second part of our series challenging views on CMEs, we present the case that the inner core of the three-part coronagraph CME may not be, and in the most common cases is not, a filament. We present our case in the form of four exhibits showing that most of the CMEs in a broad survey are not associated with an eruptive filament at the Sun, and that the cores of those CMEs that are filament-associated do not geometrically resemble or consist of material from the associated filament. We conclude with a discussion on the possible causes of the bright CME core and what happens to the filament material postlaunch. We discuss how the CME core could arise spontaneously from the eruption of a flux rope from the Sun, or could be the result of a mathematical caustic produced by the geometric projection of a twisted flux rope.

79 ASTRONOMY AND ASTROPHYSICS↗

First Evidence of Running Cosmic Vacuum: Challenging the Concordance Model

Despite the fact that a rigid Λ-term is a fundamental building block of the concordance ΛCDM model, we show that a large class of cosmological scenarios with dynamical vacuum energy density ρ{sub Λ} together with a dynamical gravitational coupling G or a possible non‐conservation of matter, are capable of seriously challenging the traditional phenomenological success of the ΛCDM. In this paper, we discuss these “running vacuum models” (RVMs), in which ρ{sub Λ}=ρ{sub Λ}(H) consists of a nonvanishing constant term and a series of powers of the Hubble rate. Such generic structure is potentially linked to the quantum field theoretical description of the expanding universe. By performing an overall fit to the cosmological observables SN Ia+BAO+H(z)+LSS+BBN+CMB (in which the WMAP9, Planck 2013, and Planck 2015 data are taken into account), we find that the class of RVMs appears significantly more favored than the ΛCDM, namely, at an unprecedented level of ≳4.2σ. Furthermore, the Akaike and Bayesian information criteria confirm that the dynamical RVMs are strongly preferred compared to the conventional rigid Λ-picture of the cosmic evolution.

79 ASTRONOMY AND ASTROPHYSICS↗

Results of the Photometric LSST Astronomical Time-series Classification Challenge (PLAsTiCC)

Abstract Next-generation surveys like the Legacy Survey of Space and Time (LSST) on the Vera C. Rubin Observatory (Rubin) will generate orders of magnitude more discoveries of transients and variable stars than previous surveys. To prepare for this data deluge, we developed the Photometric LSST Astronomical Time-series Classification Challenge (PLAsTiCC), a competition that aimed to catalyze the development of robust classifiers under LSST-like conditions of a nonrepresentative training set for a large photometric test set of imbalanced classes. Over 1000 teams participated in PLAsTiCC, which was hosted in the Kaggle data science competition platform between 2018 September 28 and 2018 December 17, ultimately identifying three winners in 2019 February. Participants produced classifiers employing a diverse set of machine-learning techniques including hybrid combinations and ensemble averages of a range of approaches, among them boosted decision trees, neural networks, and multilayer perceptrons. The strong performance of the top three classifiers on Type Ia supernovae and kilonovae represent a major improvement over the current state of the art within astronomy. This paper summarizes the most promising methods and evaluates their results in detail, highlighting future directions both for classifier development and simulation needs for a next-generation PLAsTiCC data set.

79 ASTRONOMY AND ASTROPHYSICS↗

RADIOASTRON OBSERVATIONS OF THE QUASAR 3C273: A CHALLENGE TO THE BRIGHTNESS TEMPERATURE LIMIT

Inverse Compton cooling limits the brightness temperature of the radiating plasma to a maximum of 10{sup 11.5} K. Relativistic boosting can increase its observed value, but apparent brightness temperatures much in excess of 10{sup 13} K are inaccessible using ground-based very long baseline interferometry (VLBI) at any wavelength. We present observations of the quasar 3C 273, made with the space VLBI mission RadioAstron on baselines up to 171,000 km, which directly reveal the presence of angular structure as small as 26 μas (2.7 light months) and brightness temperature in excess of 10{sup 13} K. These measurements challenge our understanding of the non-thermal continuum emission in the vicinity of supermassive black holes and require a much higher Doppler factor than what is determined from jet apparent kinematics.

79 ASTRONOMY AND ASTROPHYSICS↗

Challenges to Constraining Exoplanet Masses via Transmission Spectroscopy

MassSpec , a method for determining the mass of a transiting exoplanet from its transmission spectrum alone, was proposed by de Wit and Seager. The premise of this method relies on the planet’s surface gravity being extracted from the transmission spectrum via its effect on the atmospheric scale height, which in turn determines the strength of absorption features. Here, we further explore the applicability of MassSpec to low-mass exoplanets—specifically those in the super-Earth size range for which radial velocity determinations of the planetary mass can be extremely challenging and resource intensive. Determining the masses of these planets is of the utmost importance because their nature is otherwise highly unconstrained. Without knowledge of the mass, these planets could be rocky, icy, or gas-dominated. To investigate the effects of planetary mass on transmission spectra, we present simulated observations of super-Earths with atmospheres made up of mixtures of H{sub 2}O and H{sub 2}, both with and without clouds. We model their transmission spectra and run simulations of each planet as it would be observed with James Webb Space Telescope using the NIRISS, NIRSpec, and MIRI instruments. We find that significant degeneracies exist between transmission spectra of planets with different masses and compositions, making it impossible to unambiguously determine the planet’s mass in many cases.

79 ASTRONOMY AND ASTROPHYSICS↗

Meeting the Challenge from Bright and Fast Gamma-Ray Flares of 3C 279

Bright and fast gamma-ray flares with hard spectra have been recently detected from the blazar 3C 279, with apparent GeV luminosities up to 10{sup 49} erg s{sup −1}. The source is observed to flicker on timescales of minutes with no comparable optical–UV counterparts. Such observations challenge current models of high-energy emissions from 3C 279 and similar blazar sources that are dominated by relativistic jets along our line of sight with bulk Lorentz factors up to Γ ∼ 20 launched by supermassive black holes. We compute and discuss a model based on a clumpy jet comprising strings of compact plasmoids as indicated by radio observations. We follow the path of the synchrotron radiations emitted in the optical–UV bands by relativistic electrons accelerated around the plasmoids to isotropic Lorentz factors γ∼10{sup 3}. These primary emissions are partly reflected back by a leading member in the string that acts as a moving mirror for the approaching companions. Around the plasmoids, shrinking gap transient overdensities of seed photons build up. These are upscattered into the GeV range by inverse Compton interactions with the relativistic electrons accelerated in situ. We show that such a combined process produces bright gamma-ray flares with minor optical to X-ray enhancements. Main features of our model include: bright gamma-ray flares with risetimes as short as a few minutes, occurring at distances of order 10{sup 18} cm from the central black hole; Compton dominance at GeV energies by factors up to some 10{sup 2}; minimal reabsorption from local photon–photon interactions.

79 ASTRONOMY AND ASTROPHYSICS↗

Challenge Solutions for a Significant Water Cut Reduction History Match on Heavy Oil Polymer EOR

Milne Point Field is conducting the first-ever active polymer flood pilot program designed to enhance oil recovery (EOR) of heavy oils on the Alaska North Slope (ANS). The experimental field program consists of two pairs of horizontal injection and production wells deployed in an isolated fault block in the Schrader Bluff reservoir. The EOR method combines polymer flooding and low salinity water flooding to improve recovery. Prior average water cut reduction in polymer EOR fields ordinarily ranges between 10% to 15% for most light oil and heavy oil reservoirs. When comparing other field applications, the long-lasting (24 months) and much lower water cut poses a challenge for numerical history matching when applying typical simulation methods. This abstract discusses two practical new approaches used for history matching of the long-lasting ultralow water cut. These new applications include 1) multiple relative permeability curves with J-function incorporation with low endpoints of relative permeability of water (Krw). This approach integrated the permeability differential adjustment in the geometries of horizontal and vertical directions based on geological review. 2) A specific permeability channel strips along with the horizontal or vertical planar assumption. The current history matching results indicate success in achieving an excellent agreement with the field observed low water-cut.

Namie, S.↗

Near-Term Application Engineering Challenges in Emerging Superconducting Qudit Processors

We review the prospects to build quantum processors based on superconducting transmons and radiofrequency cavities for testing applications in the NISQ era. We identify engineering opportunities and challenges for implementation of algorithms in simulation, combinatorial optimization, and quantum machine learning in qudit-based quantum computers.

Venturelli, Davide [RIACS, Mtn. View] (ORCID:00000↗

The status and challenge of global fire modelling

Biomass burning impacts vegetation dynamics, biogeochemical cycling, atmospheric chemistry, and climate, with sometimes deleterious socio-economic impacts. Under future climate projections it is often expected that the risk of wildfires will increase. Our ability to predict the magnitude and geographic pattern of future fire impacts rests on our ability to model fire regimes, using either well-founded empirical relationships or process-based models with good predictive skill. While a large variety of models exist today, it is still unclear which type of model or degree of complexity is required to model fire adequately at regional to global scales. This is the central question underpinning the creation of the Fire Model Intercomparison Project (FireMIP), an international initiative to compare and evaluate existing global fire models against benchmark data sets for present-day and historical conditions. In this paper we review how fires have been represented in fire-enabled dynamic global vegetation models (DGVMs) and give an overview of the current state of the art in fire-regime modelling. In conclusion, we indicate which challenges still remain in global fire modelling and stress the need for a comprehensive model evaluation and outline what lessons may be learned from FireMIP.

58 GEOSCIENCES↗

Addressing numerical challenges in introducing a reactive transport code into a land surface model: a biogeochemical modeling proof-of-concept with CLM–PFLOTRAN 1.0

Abstract. We explore coupling to a configurable subsurface reactive transport code as a flexible and extensible approach to biogeochemistry in land surface models. A reaction network with the Community Land Model carbon–nitrogen (CLM-CN) decomposition, nitrification, denitrification, and plant uptake is used as an example. We implement the reactions in the open-source PFLOTRAN (massively parallel subsurface flow and reactive transport) code and couple it with the CLM. To make the rate formulae designed for use in explicit time stepping in CLMs compatible with the implicit time stepping used in PFLOTRAN, the Monod substrate rate-limiting function with a residual concentration is used to represent the limitation of nitrogen availability on plant uptake and immobilization. We demonstrate that CLM–PFLOTRAN predictions (without invoking PFLOTRAN transport) are consistent with CLM4.5 for Arctic, temperate, and tropical sites.Switching from explicit to implicit method increases rigor but introduces numerical challenges. Care needs to be taken to use scaling, clipping, or log transformation to avoid negative concentrations during the Newton iterations. With a tight relative update tolerance (STOL) to avoid false convergence, an accurate solution can be achieved with about 50 % more computing time than CLM in point mode site simulations using either the scaling or clipping methods. The log transformation method takes 60–100 % more computing time than CLM. The computing time increases slightly for clipping and scaling; it increases substantially for log transformation for half saturation decrease from 10-3 to 10-9 mol m-3, which normally results in decreasing nitrogen concentrations. The frequent occurrence of very low concentrations (e.g. below nanomolar) can increase the computing time for clipping or scaling by about 20 %, double for log transformation. Overall, the log transformation method is accurate and robust, and the clipping and scaling methods are efficient. When the reaction network is highly nonlinear or the half saturation or residual concentration is very low, the allowable time-step cuts may need to be increased for robustness for the log transformation method, or STOL may need to be tightened for the clipping and scaling methods to avoid false convergence.As some biogeochemical processes (e.g., methane and nitrous oxide reactions) involve very low half saturation and thresholds, this work provides insights for addressing nonphysical negativity issues and facilitates the representation of a mechanistic biogeochemical description in Earth system models to reduce climate prediction uncertainty.

58 GEOSCIENCES↗

Deep-Learning-Based Multi-Timescale Load Forecasting in Buildings: Opportunities and Challenges from Research to Deployment

Electricity load forecasting for buildings and campuses is becoming increasingly important as the penetration of distributed energy resources (DERs) grows. Efficient operation and dispatch of DERs require reasonably accurate predictions of future energy consumption in order to conduct near-real-time optimized dispatch of on-site generation and storage assets. Electric utilities have traditionally performed load forecasting for load pockets spanning large geographic areas, and therefore, forecasting has not been a common practice by buildings and campus operators. Given the growing trends of research and prototyping in the grid-interactive efficient buildings domain, characteristics beyond simple algorithm forecast accuracy are important in determining the algorithm's true utility for smart buildings. Other characteristics include the overall design of the deployed architecture and the operational efficiency of the forecasting system. In this work, we present a deep-learning-based load forecasting system that predicts the building load at 1-hour intervals for 18 hours in the future. We also discuss challenges associated with the real-time deployment of such systems as well as the research opportunities presented by a fully functional forecasting system that has been developed within the National Renewable Energy Laboratory's Intelligent Campus program.

building load forecasting↗