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At least 1,783 records · Page 99

Genetic control of morphological transitions in a coacervating protein template

Nature routinely exploits liquid–liquid phase separation (LLPS) of proteins to control the assembly and mineralization of hybrid materials. Here, we show that fusion of the Car9 silica-binding peptide to an elastin-like polypeptide (ELP) yields temperature- and sequence-programmable soft matter templates for the synthesis of silicified architectures ranging in size from nanometers to micrometers. Specifically, we demonstrate unprecedented control over the diameter of silica nanoparticles (SiNP) in the 30–60 nm range with 4 nm precision, show that a single arginine residue (R4) in the Car9 sequence underpins the transition from micelles to proteinosomes, and find that substitutions in other basic residues modulate electrostatic repulsion and solvation to enable access to kinetically trapped species. These structures, which include interconnected micelles, small (∼200 nm) and large (>5 µm) vesicles, are readily visualized by SEM imaging following silicification. Molecular dynamics (MD) simulations and AlphaFold predictions reveal that mutations in positively charged residues alter interfacial packing, hydration, and conformational freedom of the silica-binding segments. Overall, our results establish sequence and thermal energy as synergistic levers for morphological control across length scales using solid-binding ELPs and establish mineralization as a powerful tool to visualize the structure of dynamic soft matter assemblies.

hierarchy↗

Molecular concentration field design using closed-form steady-state solutions

Control over spatial concentration fields represents a fundamental challenge in designing synthetic biological systems and programmable soft materials. While nature creates morphogen gradients that orchestrate complex developmental processes, synthetic approaches have largely relied on empirical optimization and computationally intensive simulations. Here, we present an analytical framework for steady-state concentration fields generated by finite-sized localized sources in diffusion–degradation systems and derive closed-form solutions for one-, two-, and three-dimensional geometries. By expressing these solutions in dimensionless form, we show that gradient steepness and spatial structure are organized by the Thiele modulus, which captures the competition between diffusion and degradation length scales. The analysis reveals distinct design regimes: in degradation-dominated systems, gradient shape is governed by exponential decay and becomes dimension-independent, whereas in diffusion-dominated systems, gradient magnitude and extent follow dimension-dependent power-law scaling. Building on these results, we introduce a quantitative design strategy that uses threshold-based criteria to program concentration ranges by tuning physically accessible parameters, most directly the production rate, while holding transport and degradation properties fixed. Comparisons with numerical solutions and reported experimental systems demonstrate consistency with the predicted scaling behavior. Together, this work provides a generalizable and physically transparent framework for designing steady-state concentration fields in synthetic biological and soft matter systems, enabling predictive control of gradient-mediated organization without reliance on extensive numerical optimization.

Kim, Dong Woo [Johns Hopkins University, Baltimore↗

Forecasting for the Weather Driven Energy System - A New Task under IEA Wind

The energy system needs a range of forecast types for its operation in addition to the narrow wind power forecast that has been the focus of considerable recent attention. Therefore, the group behind the former IEA Wind Task 36 Forecasting for Wind Energy has initiated a new IEA Wind Task with a much broader perspective, which includes prospective interaction with other IEA Technology Collaboration Programmes such as the ones for PV, hydropower, system integration, hydrogen etc. In the new IEA Wind Task 51 (entitled "Foreacsting for the Weather Drive Energy System") the existing Work Packages (WPs) are complemented by work streams in a matrix structure. The Task is divided in three WPs according to the stakeholders: WP1 is mainly aimed at meteorologists, providing the weather forecast basis for the power forecasts. In WP2, the forecast service vendors are the main stakeholders, while the end users populate WP3. The new Task 51 started in January 2022. Planned activities include 4 workshops. The first will focus on the state of the art in forecasting for the energy system plus related research issues and be held during September 2022 in Dublin. The other three workshops will be held later during the 4-year Task period and address (1) seasonal forecasting with emphasis on Dunkelflaute, storage and hydro, (2) minute-scale forecasting, and (3) extreme power system events. The issues and conclusions of each of the workshops will be documented by a published paper. Additionally, the Recommended Practice on Forecast Solution Selection will be updated to reflect the broader perspective.

geophysics computing↗

Planck intermediate results. XXVI. Optical identification and redshifts of Planck clusters with the RTT150 telescope

In this paper, we present the results of approximately three years of observations of Planck Sunyaev-Zeldovich (SZ) sources with the Russian-Turkish 1.5 m telescope (RTT150), as a part of the optical follow-up programme undertaken by the Planck collaboration. During this time period approximately 20% of all dark and grey clear time available at the telescope was devoted to observations of Planck objects. Some observations of distant clusters were also done at the 6 m Bolshoi Telescope Alt-azimutalnyi (BTA) of the Special Astrophysical Observatory of the Russian Academy of Sciences. In total, deep, direct images of more than one hundred fields were obtained in multiple filters. We identified 47 previously unknown galaxy clusters, 41 of which are included in the Planck catalogue of SZ sources. The redshifts of 65 Planck clusters were measured spectroscopically and 14 more were measured photometrically. We discuss the details of cluster optical identifications and redshift measurements. Finally, we also present new spectroscopic redshifts for 39 Planck clusters that were not included in the Planck SZ source catalogue and are published here for the first time.

79 ASTRONOMY AND ASTROPHYSICS↗

Planck intermediate results: XXXVI. Optical identification and redshifts of Planck SZ sources with telescopes at the Canary Islands observatories

In this paper, we present the results of approximately three years of observations of Planck Sunyaev-Zeldovich (SZ) sources with telescopes at the Canary Islands observatories as part of the general optical follow-up programme undertaken by the Planck Collaboration. In total, 78 SZ sources are discussed. Deep-imaging observations were obtained for most of these sources; spectroscopic observations in either in long-slit or multi-object modes were obtained for many. We effectively used 37.5 clear nights. We found optical counterparts for 73 of the 78 candidates. This sample includes 53 spectroscopic redshift determinations, 20 of them obtained with a multi-object spectroscopic mode. Finally, the sample contains new redshifts for 27 Planck clusters that were not included in the first Planck SZ source catalogue (PSZ1).

79 ASTRONOMY AND ASTROPHYSICS↗

The MeerKAT Galaxy Cluster Legacy Survey I. Survey Overview and Highlights

MeerKAT’s large number (64) of 13.5 m diameter antennas, spanning 8 km with a densely packed 1 km core, create a powerful instrument for wide-area surveys, with high sensitivity over a wide range of angular scales. The MeerKAT Galaxy Cluster Legacy Survey (MGCLS) is a programme of long-track MeerKAT L-band (900–1670 MHz) observations of 115 galaxy clusters, observed for ~6–10 h each in full polarisation. The first legacy product data release (DR1), made available with this paper, includes the MeerKAT visibilities, basic image cubes at ~8" resolution, and enhanced spectral and polarisation image cubes at ~8" and 15" resolutions. Typical sensitivities for the full-resolution MGCLS image products range from ~3–5 μJy beam –1 . The basic cubes are full-field and span 2° × 2°. The enhanced products consist of the inner 1.2° × 1.2° field of view, corrected for the primary beam. The survey is fully sensitive to structures up to ~10' scales, and the wide bandwidth allows spectral and Faraday rotation mapping. Relatively narrow frequency channels (209 kHz) are also used to provide H I mapping in windows of 0 < z < 0.09 and 0.19 < z < 0.48. Here, in this paper, we provide an overview of the survey and the DR1 products, including caveats for usage. We present some initial results from the survey, both for their intrinsic scientific value and to highlight the capabilities for further exploration with these data. These include a primary-beam-corrected compact source catalogue of ~626 000 sources for the full survey and an optical and infrared cross-matched catalogue for compact sources in the primary-beam-corrected areas of Abell 209 and Abell S295. We examine dust unbiased star-formation rates as a function of cluster-centric radius in Abell 209, extending out to 3.5 R 200 . We find no dependence of the star-formation rate on distance from the cluster centre, and we observe a small excess of the radio-to-100 μm flux ratio towards the centre of Abell 209 that may reflect a ram pressure enhancement in the denser environment. We detect diffuse cluster radio emission in 62 of the surveyed systems and present a catalogue of the 99 diffuse cluster emission structures, of which 56 are new. These include mini-halos, halos, relics, and other diffuse structures for which no suitable characterisation currently exists. We highlight some of the radio galaxies that challenge current paradigms, such as trident-shaped structures, jets that remain well collimated far beyond their bending radius, and filamentary features linked to radio galaxies that likely illuminate magnetic flux tubes in the intracluster medium. We also present early results from the H I analysis of four clusters, which show a wide variety of H I mass distributions that reflect both sensitivity and intrinsic cluster effects, and the serendipitous discovery of a group in the foreground of Abell 3365.

79 ASTRONOMY AND ASTROPHYSICS↗

Hubble Asteroid Hunter

Context: The Hubble Space Telescope (HST) archives constitute a rich dataset of high-resolution images to mine for strong gravitational lenses. While many HST programmes specifically target strong lenses, they can also be present by coincidence in other HST observations. Aims: Our aim is to identify non-targeted strong gravitational lenses, without any prior selection on the lens properties, in almost two decades of images from the ESA HST archive (eHST). Methods: We used crowdsourcing on the Hubble Asteroid Hunter (HAH) citizen science project to identify strong lenses, along with asteroid trails, in publicly available large field-of-view HST images. We visually inspected 2354 objects tagged by citizen scientists as strong lenses to clean the sample and identify the genuine lenses. Results: We report the detection of 252 strong gravitational lens candidates, which were not the primary targets of the HST observations. A total of 198 of them are new, not previously reported by other studies, consisting of 45 A grades, 74 B grades and 79 C grades. The majority are galaxy-galaxy configurations. The newly detected lenses are, on average, 1.3 magnitudes fainter than previous HST searches. This sample of strong lenses with high-resolution HST imaging is ideal to follow up with spectroscopy for lens modelling and scientific analyses. Conclusions: This paper presents the unbiased search of lenses that enabled us to find a wide variety of lens configurations, including exotic lenses. We demonstrate the power of crowdsourcing in visually identifying strong lenses and the benefits of exploring large archival datasets. This study shows the potential of using crowdsourcing in combination with artificial intelligence for the detection and validation of strong lenses in future large-scale surveys such as ESA’s Euclid mission or in James Webb Space Telescope (JWST) archival images.

79 ASTRONOMY AND ASTROPHYSICS↗

Euclid I. Overview of the Euclid mission

The current standard model of cosmology successfully describes a variety of measurements, but the nature of its main ingredients, dark matter and dark energy, remains unknown. Euclid is a medium-class mission in the Cosmic Vision 2015–2025 programme of the European Space Agency (ESA) that will provide high-resolution optical imaging, as well as near-infrared imaging and spectroscopy, over about 14 000 deg 2 of extragalactic sky. In addition to accurate weak lensing and clustering measurements that probe structure formation over half of the age of the Universe, its primary probes for cosmology, these exquisite data will enable a wide range of science. This paper provides a high-level overview of the mission, summarising the survey characteristics, the various data-processing steps, and data products. We also highlight the main science objectives and expected performance.

cosmology↗

A real-time search for Type Ia Supernovae with late-time interactions with circumstellar material in ZTF data

While it is generally accepted that Type Ia supernovae (SNe Ia) are the terminal explosions of white dwarfs (WDs), the nature of their progenitor systems and the mechanisms that lead up to these explosions remain widely debated. In rare cases, the SN ejecta interact with circumstellar material (CSM) that had previously been ejected from the progenitor system. The longer the delay between the creation of the CSM and the SN explosion, the greater the distance between the SN explosion site and the CSM and the later the onset of the interaction. The unknown distance between the CSM and SN explosion site makes it impossible to predict when the interaction will start. If the time between the SN explosion and the onset of the CSM interaction is of the order of several months to years, the SN has generally faded and it is no longer actively followed up on. This makes it even more difficult to detect the interaction while it is happening. In this work, we report on a real-time monitoring programme running between 13 November 2023 and 9 July 2024. It monitored 6914 SNe Ia for signs of late-time rebrightening using the Zwicky Transient Facility (ZTF). Flagged candidates were rapidly followed up on with photometry and spectroscopy to confirm the late-time excess and its position. We report the discovery of a ∼50 day rebrightening event in SN 2020qxz around 1200 rest-frame days after the peak of its light curve. SN 2020qxz exhibited signs of an early CSM interaction, but had faded from view over two years before its reappearance. Initial follow-up spectroscopy revealed the presence of four emission lines, while later follow-up spectroscopy showed that these had faded shortly after the end of the ZTF-detected rebrightening event. Our best match for these emission lines are H β (blueshifted by ∼5900 km s −1 ) and Ca II λ8542 , N I λ8567 , and K I λλ8763, 8767 (all blueshifted by 5100 km s −1 ; although we note that the line identifications are uncertain). This shows that catching and following up on late-time interactions as they occur can offer new clues on the nature of the progenitor systems that produce these SNe by putting constraints on the possible type of donor star. The only way to do this systematically is to use large sky surveys such as ZTF and the upcoming Vera C. Rubin Observatory’s Legacy Survey of Space and Time (LSST) to monitor a large sample of objects for the rare events that reappear long after the object has faded from view.

circumstellar matter↗

Reinstated JET ICRF ILA: Overview and Results

The works undertaken to reinstate the JET ICRF ILA are reviewed. The vacuum matching capacitors were replaced, an extensive calibration of all the measurements in the RF circuit was carried out, new simulation tools were created and new control algorithms were implemented for the – toroidal and poloidal – phase control of the array as well as for the matching of the second stage. A review of the contribution of the reinstated ILA to the JET programme during the last campaigns is given showing namely that the new controls allowed extending the range of the operation to lower (29MHz) and higher (51MHz) frequencies than previously achieved and allowed more flexible and reliable operation. Operation with coupled power levels up to 2.8MW and voltages up to 40kV was achieved. ILA results on plasma are discussed and emphasis is given to the features of interest for ITER.

Dumortier, Pierre↗

Electromagnetic physics vectorization in the GeantV transport framework

The development of the GeantV Electromagnetic (EM) physics package has evolved following two necessary paths towards code modernization. A first phase required the revision of the main electromagnetic physics models and their implementation. The main objectives were to improve their accuracy, extend them to the new high-energy frontier posed by the Future Circular Collider (FCC) programme and allow a better adaptation to a multi-particle flow. Most of the EM physics models in GeantV have been reviewed from theoretical perspective and rewritten with vector-friendly implementations, being now available in scalar mode in the alpha release. The second phase consists of a thorough investigation on the possibility to vectorise the most CPU-intensive physics code parts, such as final state sampling. We have shown the feasibility of implementing electromagnetic physics models that take advantage of SIMD/SIMT architectures, thus obtaining gains in performance. After this phase, the time has come for the GeantV project to take a step forward towards the final proof of concept. This takes shape through the testing of the full simulation chain (transport + physics + geometry) running in vectorized mode. In this paper we will present the first benchmark results obtained after vectorizing a full set of electromagnetic physics models.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Writing ROOT Data in Parallel with TBufferMerger

Experiments at the Large Hadron Collider (LHC) produce tens of petabytes of new data in ROOT format per year that need to be processed and analysed. In the next decade, following the planned upgrades of the LHC and its detectors, this data production rate is expected to increase at least ten-fold. Therefore, optimizing the ROOT I/O subsystem is of critical importance to the success of the LHC physics programme. This contribution presents ROOT’s approach for writing data from multiple threads to a single output file in an efficient way. Technical aspects of the implementation—the TBufferMerger class—and programming model examples are described. Measurements of runtime performance and the overall improvement relative to the case of serial data writing are also discussed.

47 OTHER INSTRUMENTATION↗

RDataFrame: Easy Parallel ROOT Analysis at 100 Threads

The Physics programmes of LHC Run III and HL-LHC challenge the HEP community. The volume of data to be handled is unprecedented at every step of the data processing chain: analysis is no exception. Physicists must be provided with first-class analysis tools which are easy to use, exploit bleeding edge hardware technologies and allow to seamlessly express parallelism. This document discusses the declarative analysis engine of ROOT, RDataFrame, and gives details about how it allows to profitably exploit commodity hardware as well as high-end servers and manycore accelerators thanks to the synergy with the existing parallelised ROOT components. Real-life analyses of LHC experiments’ data expressed in terms of RDataFrame are presented, highlighting the programming model provided to express them in a concise and powerful way. The recent developments which make RDataFrame a lightweight data processing framework are described, such as callbacks and I/O capabilities. Finally, the flexibility of RDataFrame and its ability to read data formats other than ROOT’s are characterised, as an example it is discussed how RDataFrame can directly read and analyse LHCb’s raw data format MDF.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Bringing heterogeneity to the CMS software framework

The advent of computing resources with co-processors, for example Graphics Processing Units (GPU) or Field-Programmable Gate Arrays (FPGA), for use cases like the CMS High-Level Trigger (HLT) or data processing at leadership-class supercomputers imposes challenges for the current data processing frameworks. These challenges include developing a model for algorithms to offload their computations on the co-processors as well as keeping the traditional CPU busy doing other work. The CMS data processing framework, CMSSW, implements multithreading using the Intel Threading Building Blocks (TBB) library, that utilizes tasks as concurrent units of work. In this paper we will discuss a generic mechanism to interact effectively with non-CPU resources that has been implemented in CMSSW. In addition, configuring such a heterogeneous system is challenging. In CMSSW an application is configured with a configuration file written in the Python language. The algorithm types are part of the configuration. The challenge therefore is to unify the CPU and co-processor settings while allowing their implementations to be separate. We will explain how we solved these challenges while minimizing the necessary changes to the CMSSW framework. We will also discuss on a concrete example how algorithms would offload work to NVIDIA GPUs using directly the CUDA API.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Seamless integration of commercial Clouds with ATLAS Distributed Computing

The CERN ATLAS Experiment successfully uses a worldwide dis-tributed computing Grid infrastructure to support its physics programme at the Large Hadron Collider (LHC). The Grid workflow system PanDA routinely manages up to 700,000 concurrently running production and analysis jobs to process simulation and detector data. In total more than 500 PB of data are distributed over more than 150 sites in the WLCG and handled by the ATLAS data management system Rucio. To prepare for the ever growing data rate in future LHC runs new developments are underway to embrace industry accepted protocols and technologies, and utilize opportunistic resources in a standard way. This paper reviews how the Google and Amazon Cloud computing ser-vices have been seamlessly integrated as a Grid site within PanDA and Rucio. Performance and brief cost evaluations will be discussed. Such setups could offer advanced Cloud tool-sets and provide added value for analysis facilities that are under discussions for LHC Run-4.

97 MATHEMATICS AND COMPUTING↗

Evolution of the ATLAS event data model for the HL-LHC

The upcoming high-luminosity run of the CERN Large Hadron Collider (HL-LHC) will yield an unprecedented volume of data. In order to process this data, the ATLAS collaboration is evolving its offline software to be able to use heterogeneous resources such as graphical processing units (GPUs) and field-programmable gate arrays (FPGAs). To reduce conversion overheads, the event data model (EDM) should be compatible with the requirements of these resources. While the ATLAS EDM has long allowed representing data as a structure of arrays, further evolution of the EDM can enable more efficient sharing of data between CPU and GPU resources. Some of this work will be summarized here, including extensions to allow controlling how memory for event data is allocated and the implementation of jagged vectors.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Ion beams 12, Legnaro 6-8 June 2012, the 50 years (1961-2011) of the Legnaro Laboratory

A short review of the history of the Legnaro Laboratory is presented since its foundation 50 years ago by Prof. A. Rostagni of the University of Padova. The evolution of the Laboratory as a national reference center for fundamental and applied nuclear physics researches is outlined, pointing out its transformation into the INFN National Laboratories in 1968. After the first CN VdG Accelerator of 5.5 MV operating in 1961 and the AN2000 devoted to interdisciplinary researches (1971), i.e. 40 years ago, ten years later the advent of the first heavy ion facility in Italy, the XTU Tandem accelerator, and later on of the ALPI superconducting linear accelerator, was crucial for any future developments, not only in the field of nuclear physics but also for the evolution of interdisciplinary programmes with ion beams.

43 PARTICLE ACCELERATORS↗

A multichannel magnetic probe system for analysing magnetic fluctuations in helical axis plasmas

The need to understand the structure of magnetic fluctuations in H-1NF heliac [S. Hamberger et al., Fusion Technol. 17, 123 (1990)] plasmas has motivated the installation of a sixteen former, tri-axis helical magnetic probe Mirnov array (HMA). The new array complements two existing poloidal Mirnov arrays by providing polarisation information, higher frequency response, and improved toroidal resolution. The helical placement is ideal for helical axis plasmas because it positions the array as close as possible to the plasma in regions of varying degrees of favourable curvature in the magnetohydrodynamic sense, but almost constant magnetic angle. This makes phase variation with probe position near linear, greatly simplifying the analysis of the data. Several of the issues involved in the design, installation, data analysis, and calibration of this unique array are presented including probe coil design, frequency response measurements, mode number identification, orientation calculations, and mapping probe coil positions to magnetic coordinates. Details of specially designed digitally programmable pre-amplifiers, which allow gains and filters to be changed as part of the data acquisition initialisation sequence and stored with the probe signals, are also presented. The low shear heliac geometry [R. Jiménez-Gómez et al., Nucl. Fusion 51, 033001 (2011)], flexibility of the H-1NF heliac, and wealth of information provided by the HMA create a unique opportunity for detailed study of Alfvén eigenmodes, which could be a serious issue for future fusion reactors.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗