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At least 1,783 records · Page 99
All sourcesNASA NTRSDOE OSTI
DOE OSTI2023

First-Principles Investigation of Near-Surface Divacancies in Silicon Carbide

The realization of quantum sensors using spin defects in semiconductors requires a thorough understanding of the physical properties of the defects in the proximity of surfaces. We report a study of the divacancy (V Si V C ) in 3C-SiC, a promising material for quantum applications, as a function of surface reconstruction and termination with -H, -OH, -F and oxygen groups. Here we show that a V Si V C close to hydrogen-terminated (2 x 1) surfaces is a robust spin-defect with a triplet ground state and no surface states in the band gap and with small variations of many of its physical properties relative to the bulk, including the zero-phonon line and zero-field splitting. However, the Debye-Waller factor decreases in the vicinity of the surface and our calculations indicate it may be improved by strain-engineering. Overall our results show that the V Si V C close to SiC surfaces is a promising spin defect for quantum applications, similar to its bulk counterpart.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2022

The solution structures and relative stability constants of lanthanide–EDTA complexes predicted from computation

Ligand selectivity to specific lanthanide (Ln) ions is key to the separation of rare earth elements from each other. Ligand selectivity can be quantified with relative stability constants (measured experimentally) or relative binding energies (calculated computationally). The relative stability constants of EDTA (ethylenediaminetetraacetic acid) with La 3+ , Eu 3+ , Gd 3+ , and Lu 3+ were predicted from relative binding energies, which were quantified using electronic structure calculations with relativistic effects and based on the molecular structures of Ln–EDTA complexes in solution from density functional theory molecular dynamics simulations. The protonation state of an EDTA amine group was varied to study pH ~7 and ~11 conditions. Further, simulations at 25 °C and 90 °C were performed to elucidate how structures of Ln–EDTA complexes varying with temperature are related to complex stabilities at different pH conditions. Relative stability trends are predicted from computation for varying Ln 3+ ions (La, Eu, Gd, Lu) with a single ligand (EDTA at pH ~11), as well as for a single Ln 3+ ion (La) with varying ligands (EDTA at pH ~7 and ~11). Changing the protonation state of an EDTA amine site significantly changes the solution structure of the Ln–EDTA complex resulting in a reduction of the complex stability. As a result, increased Ln–ligand complex stability is correlated to reduced structural variations in solution upon an increase in temperature.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2020

Sarecycline interferes with tRNA accommodation and tethers mRNA to the 70S ribosome

Sarecycline is a new narrow-spectrum tetracycline-class antibiotic approved for the treatment of acne vulgaris. Tetracyclines share a common four-ring naphthacene core and inhibit protein synthesis by interacting with the 70S bacterial ribosome. Sarecycline is distinguished chemically from other tetracyclines because it has a 7-[[methoxy(methyl)amino]methyl] group attached at the C7 position of ring D. To investigate the functional role of this C7 moiety, we determined the X-ray crystal structure of sarecycline bound to the Thermus thermophilus 70S ribosome. Our 2.8-Å resolution structure revealed that sarecycline binds at the canonical tetracycline binding site located in the decoding center of the small ribosomal subunit. Importantly, unlike other tetracyclines, the unique C7 extension of sarecycline extends into the messenger RNA (mRNA) channel to form a direct interaction with the A-site codon to possibly interfere with mRNA movement through the channel and/or disrupt A-site codon–anticodon interaction. Based on our biochemical studies, sarecycline appears to be a more potent initiation inhibitor compared to other tetracyclines, possibly due to drug interactions with the mRNA, thereby blocking accommodation of the first aminoacyl transfer RNA (tRNA) into the A site. Overall, our structural and biochemical findings rationalize the role of the unique C7 moiety of sarecycline in antibiotic action.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2025

Spin–orbit torque in a three-fold-symmetric bilayer and its effect on magnetization dynamics

Field-free switching of perpendicular magnetization has previously been observed in an epitaxial L1 1 -ordered CoPt/CuPt bilayer and attributed to spin–orbit torque (SOT) arising from the crystallographic 3m point group of the interface. Using a first-principles nonequilibrium Green's function formalism combined with the Anderson disorder model, we calculate the angular dependence of the SOT in a CoPt/CuPt bilayer and find that the magnitude of the 3m SOT is about 20% of the conventional dampinglike SOT. We further study the magnetization dynamics in perpendicularly magnetized films in the presence of 3m SOT and Dzyaloshinskii–Moriya interaction, using the equations of motion for domain wall dynamics and micromagnetic simulations. For systems where strong interfacial DMI results in the Néel character of domain walls, we find that a very large current density is required to achieve deterministic switching, because reorientation of the magnetization inside the domain wall is necessary to induce the switching asymmetry. For thicker films with relatively weak interfacial DMI and the Bloch character of domain walls, deterministic switching is possible at much smaller current densities, which may explain the recent experimental findings.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗
DOE OSTI2022

Selection and development of aptamers for pyoverdine

The rhizosphere is a small region surrounding plant roots that is enriched in biochemicals from root exudates and populated with fungi, nematode, and bacteria. Interaction of rhizosphere organisms with plants is mainly promoted by exudates from the roots. Root exudates contain biochemicals that come from primary and secondary metabolisms of plants. These biochemicals attract microbes, which influence plant nutrition. The rhizosphere bacteria (microbiome) are vital to plant nutrient uptake and influence biotic and abiotic stress and pathogenesis. Pseudomonas is a genus of gammaproteobacteria known for its ubiquitous presence in natural habitats and its striking ecological, metabolic, and biochemical diversity. Within the genus, members of the Pseudomonas fluorescens group are common inhabitants of soil and plant surfaces, and certain strains function in the biological control of plant disease, protecting plants from infection by soilborne and aerial plant pathogens. The soil bacterium Pseudomonas protegens Pf-5 (also known as Pseudomonas fluorescensPf-5) is a well-characterized biological strain, which is distinguished by its prolific production of the secondary metabolite, pyoverdine. Knowledge of the distribution of P. fluorescens secretory activity around plant roots is very important for understanding the interaction between P. fluorescens and plants and can be achieved by real time tracking of pyoverdine. To achieve the capability of real-time tracking in soil, we have used a structure-switching SELEX strategy to select high affinity ssDNA and 2’ F-Y-RNA aptamers with specificity for pyoverdine over other siderophores. Pyoverdines from various strains possess a conserved chromophore along with strain-specific peptide chain. Some of the isolated aptamers bind to chromophore of pyoverdine. These will identify pyoverdines from a variety of pseudomonads. Identification of aptamers that selectively bind the peptide portion of pyoverdine Pf-5 is underway. The identified aptamers that are broadly and narrowly specific for pyoverdines or Pf-5 will be optimized for integration into an electrochemical biosensor to track, in real time, P fluorescens activity and other pseudomonads in and around the rhizosphere.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2025

Robustness of Vacancy-Bound Non-Abelian Anyons in the Kitaev Model in a Magnetic Field

Non-Abelian anyons in quantum spin liquids (QSLs) provide a promising route to fault-tolerant topological quantum computation. In the exactly solvable Kitaev honeycomb model, such anyons of the QSL state can be bound to nonmagnetic spin vacancies and endowed with non-Abelian statistics by an infinitesimal magnetic field. Here, we investigate how this approach for stabilizing non-Abelian anyons extends to a finite magnetic field represented by a proper Zeeman term. Through large-scale density-matrix renormalization group simulations, we compute the vacancy-anyon binding energy as a function of magnetic field for both the ferromagnetic and antiferromagnetic Kitaev models. Here, we find that anyon binding remains robust within the entire QSL phase for the ferromagnetic Kitaev model but breaks down already inside this phase for the antiferromagnetic Kitaev model. To compute a binding energy several orders of magnitude below the magnetic energy scale, we introduce both a refined definition and an extrapolation scheme based on carefully tailored perturbations.

Xiao, Bo [Oak Ridge National Laboratory (ORNL), Oa↗
DOE OSTI2025

A Rhodopseudomonas strain with a substantially smaller genome retains the core metabolic versatility of its genus

ABSTRACT Rhodopseudomonas are a group of phototrophic microbes with a marked metabolic versatility and flexibility that underpins their potential use in the production of value-added products, bioremediation, and plant growth promotion. Members of this group have an average genome size of about 5.5 Mb, but two closely related strains have genome sizes of about 4.0 Mb. To identify the types of genes missing in a reduced genome strain, we compared strain DSM127 with other Rhodopseudomonas isolates at the genomic and phenotypic levels. We found that DSM127 can grow as well as other members of the Rhodopseudomonas genus and retains most of their metabolic versatility, but it has many fewer genes associated with high-affinity transport of nutrients, iron uptake, nitrogen metabolism, and biodegradation of aromatic compounds. This analysis indicates genes that can be deleted in genome reduction campaigns and suggests that DSM127 could be a favorable choice for biotechnology applications using Rhodopseudomonas or as a strain that can be engineered further to reside in a specialized natural environment. IMPORTANCE Rhodopseudomonas are a cohort of phototrophic bacteria with broad metabolic versatility. Members of this group are present in diverse soil and water environments, and some strains are found associated with plants and have plant growth-promoting activity. Motivated by the idea that it may be possible to design bacteria with reduced genomes that can survive well only in a specific environment or that may be more metabolically efficient, we compared Rhodopseudomonas strains with typical genome sizes of about 5.5 Mb to a strain with a reduced genome size of 4.0 Mb. From this, we concluded that metabolic versatility is part of the identity of the Rhodopseudomonas group, but high-affinity transport genes and genes of apparent redundant function can be dispensed with.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

Environmental impacts of dam reservoir filling in the East Amazon

Mitigating the environmental impacts caused by hydroelectric dams is a worldwide challenge. The aquatic ecosystem is the most impacted during the reservoir filling phase, yet biogeochemical dynamics at this stage are not well-studied. Here we evaluate water quality and hydraulic parameters in the Araguari River (Amapá/Brazil) during the filling of the Ferreira Gomes Hydroelectric Power Plant reservoir (UHEFG). Five field campaigns were performed from July 2014 to August 2015 across nine sample sites within the reservoir (P1, P2, …P9) and only one downstream (P10). The following key variables were monitored: Trophic State Index (TSI), Total Coliforms (TC), E. coli (EC) and Chlorophyll-a (Chl-a), along with physical and chemical variables (Temperature, Suspended Solids, Total Dissolved Solids, Electrical Conductivity, Turbidity, Color, pH, DO, Al3+, NH4+, Cl-, Mg1+, Ca2+, total Phosphorous, NH3, NO3-, and SO42). Besides that, hydraulic-operational variables were also investigated: inflows (Qa), outflows (Qd), and variation in reservoir volume (Vol%). Multiple Regression Analyses showed that the key parameters were both significantly influenced by physio-chemical and hydraulic variables (0.46=R2adj=0.99, p<0.05). The DO showed significant spatial variation, being influenced by the turbulence from the Coaracy Nunes dam (UHECN) upstream and the UHEFG dam downstream. The Vol% influenced the TSI, which ranged from oligotrophic to hypertrophic and eventually stabilized at mesotrophic. The levels of TSI, TC, and Chl-a decreased and the level of E. coli increased (p<0.05) as a function of Vol%. A Cluster Analysis showed the formation of three spatial groups - two inside the reservoir and one downstream (P10). This suggests that in the rainy season or transition season, the hydraulic residence time in the reservoir is very low (16 = thr = 36 h) when hydrodynamic processes are dominant. In the dry season (thr ˜ 1 month), biogeochemical and hydrodynamic processes occur at similar time scales to the nutrient and microbial abundance. These results confirm the hypothesis that the filling phase has significant impacts on the key parameters of the water quality (p<0.05). We conclude that the filling phase of the UHEFG reservoir generated significant environmental impacts, which have repercussions even retrospectively.

Amazon, biogeochemistry, ecosystem, extreme event,↗
DOE OSTI2020

Microbial Diversity Associated with the Pollen Stores of Captive-Bred Bumble Bee Colonies

The pollen stores of bumble bees host diverse microbiota that influence overall colony fitness. Yet, the taxonomic identity of these symbiotic microbes is relatively unknown. In this descriptive study, we characterized the microbial community of pollen provisions within captive-bred bumble bee hives obtained from two commercial suppliers located in North America. Findings from 16S rRNA and ITS gene-based analyses revealed that pollen provisions from the captive-bred hives shared several microbial taxa that have been previously detected among wild populations. While diverse microbes across phyla Firmicutes, Proteobacteria, Bacteroidetes, Actinobacteria, and Ascomycota were detected in all commercial hives, significant differences were detected at finer-scale taxonomic resolution based on the supplier source. The causative agent of chalkbrood disease in honey bees, Ascosphaera apis, was detected in all hives obtained from one supplier source, although none of the hives showed symptoms of infection. The shared core microbiota across both commercial supplier sources consisted of two ubiquitous bee-associated groups, Lactobacillus and Wickerhamiella/Starmerella clade yeasts that potentially contribute to the beneficial function of the microbiome of bumble bee pollen provisions.

16S rRNA gene↗
NASA NTRS1985

Performance of 12Ah aerospace nickel-cadmium cells of design variable groups

The design variable program of NASA is a systematic approach to evaluate the performance of 12Ah aerospace nickel-cadmium cells of 9 important cell designs. These cells were life cycled in a Low-Earth Orbit (LEO) regime for 3 to 4 years. Representative cells taken from the design variable groups after different cycling periods have been examined. The results show that: (1) positive swelling and carbonate content in the electrolyte increases as a function of the number of cycles, (2) electrolyte distribution follows the order NEG greater than POS greater than SEP, 3) control and no PQ groups outperformed the rest of the groups and (4) the polypropylene group shows very heavy cadmium migration and poor performance.

Vasanth, K. L.↗
NASA NTRS1985

Microgravity associated changes in pituitary growth hormone (GH) cells prepared from rats flown on Space Lab 3

The effect of microgravity on the release of pituitary growth hormone (GH) in rats is studied. The pituitary glands from six adult rats exposed to microgravity are analyzed for in vitro and in vivo changes in pituitary growth hormone cells. The GH cell functions in the somatotrophs of flight rats are compared to a control group. The two assay procedures employed in the experiment are described. It is observed that intracellular levels of GH are two to three times greater in the flight rats than in the control group; however, the amount of GH released from the somatotrophs is 1.11 + or - 0.4 micrograms for the flight rats and 1.85 + or - 1.3 micrograms for the control rats.

Hymer, W. C.↗
NASA NTRS1987

Mars manned transportation vehicle

A viable power system technology for a surface transportation vehicle to explore the planet Mars is presented. A number of power traction systems were investigated, and it was found that a regenerative hydrogen-oxygen fuel cell appears to be attractive for a manned Mars rover application. Mission requirements were obtained from the Manned Mars Mission Working Group. Power systems weights, power, and reactants requirements were determined as a function of vehicle weights for vehicles weighing from 6,000 to 16,000 lb (2,722 to 7,257 kg), (Earth weight). The vehicle performance requirements were: velocity, 10 km/hr; range, 100 km; slope climbing capability, 30 deg uphill for 50 km; mission duration, 5 days; and crew, 5. Power requirements for the operation of scientific equipment and support system capabilities were also specified and included in this study. The concept developed here would also be applicable to a Lunar based vehicle for Lunar exploration. The reduced gravity on the Lunar surface, (over that on the Martian surface), would result in an increased range or capability over that of the Mars vehicle since many of the power and energy requirements for the vehicle are gravity dependent.

Perez-Davis, Marla E.↗
NASA NTRS1988

Plant health sensing

If plants are to be used as a food source for long term space missions, they must be grown in a stable environment where the health of the crops is continuously monitored. The sensor(s) to be used should detect any diseases or health problems before irreversible damage occurs. The method of analysis must be nondestructive and provide instantaneous information on the condition of the crop. In addition, the sensor(s) must be able to function in microgravity. This first semester, the plant health and disease sensing group concentrated on researching and consulting experts in many fields in attempts to find reliable plant health indicators. Once several indicators were found, technologies that could detect them were investigated. Eventually the three methods chosen to be implemented next semester were stimulus response monitoring, video image processing and chlorophyll level detection. Most of the other technologies investigated this semester are discussed here. They were rejected for various reasons but are included in the report because NASA may wish to consider pursuing them in the future.

Manukian, Ara↗
NASA NTRS1989

Spectral characteristics of chlorites and Mg-serpentines using high-resolution reflectance spectroscopy

High-resolution reflectance spectroscopy is used to determine the spectral characteristics of serpentines and chlorites. The structure and chemistry of hydrous layered silicates are reviewed. The possibility of distinguishing between isochemical end-members of the Mg-rich serpentine group and the capability of recognizing spectral variations in chlorites as a function of Fe/Mg ratio are demonstrated. Consideration is given to the application of the findings to terrestrial, asteroid, and meteorite studies.

King, Trude V. V.↗
NASA NTRS1989

Mars manned transportation vehicle

A viable power system technology for a surface transportation vehicle to explore the planet Mars is presented. A number of power traction systems were investigated, and it was found that a regenerative hydrogen-oxygen fuel cell appears to be attractive for a manned Mars rover application. Mission requirements were obtained from the Manned Mars Mission Working Group. Power systems weights, power, and reactants requirements were determined as a function of vehicle weights for vehicles weighting from 6,000 to 16,000 lb (2,722 to 7,257 kg), (Earth weight). The vehicle performance requirements were: velocity, 10 km/hr; range, 100 km; slope climbing capability, 30 deg uphill for 50 km; mission duration, 5 days; and crew, 5. Power requirements for the operation of scientific equipment and support system capabilities were also specified and included in this study. The concept developed here would also be applicable to a Lunar based vehicle for Lunar exploration. The reduced gravity on the Lunar surface, (over that on the Martian surface), would result in an increased range or capability over that of the Mars vehicle since many of the power and energy requirements for the vehicle are gravity dependent.

Perez-Davis, Marla E.↗
NASA NTRS1999

Bone Proteoglycan Changes During Skeletal Unloading

Skeletal adaptability to mechanical loads is well known since the last century. Disuse osteopenia due to the microgravity environment is one of the major concerns for space travelers. Several studies have indicated that a retardation of the mineralization process and a delay in matrix maturation occur during the space flight. Mineralizing fibrillar type I collagen possesses distinct cross-linking chemistries and their dynamic changes during mineralization correlate well with its function as a mineral organizer. Our previous studies suggested that a certain group of matrix proteoglycans in bone play an inhibitory role in the mineralization process through their interaction with collagen. Based on these studies, we hypothesized that the altered mineralization during spaceflight is due in part to changes in matrix components secreted by cells in response to microgravity. In this study, we employed hindlimb elevation (tail suspension) rat model to study the effects of skeletal unloading on matrix proteoglycans in bone.

Yamauchi, M.↗
NASA NTRS2001

NASA Regional Planetary Image Facility

The Regional Planetary Image Facility (RPIF) provided access to data from NASA planetary missions and expert assistance about the data sets and how to order subsets of the collections. This ensures that the benefit/cost of acquiring the data is maximized by widespread dissemination and use of the observations and resultant collections. The RPIF provided education and outreach functions that ranged from providing data and information to teachers, involving small groups of highly motivated students in its activities, to public lectures and tours. These activities maximized dissemination of results and data to the educational and public communities.

Arvidson, Raymond E.↗