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DOE OSTI2018

Final Scientific/Technical Report: Integrating Advanced Software and Statistical Methods for Spectroscopic Dark Energy Surveys

“Dark energy” is a phenomenon of unknown origin that pervades the vacuum of space and is causing the present-day expansion of the universe to accelerate. Understanding the nature of dark energy is one of the most fundamental challenges to modern physics, having the potential to revolutionize our theories of both gravity and elementary particle physics. The effects of dark energy are currently only accessible to astronomical survey experiments that probe large volumes of the cosmos. One of the most powerful forms of experiment for studying dark energy is the cosmological “redshift survey,” which maps the large-scale structure of the universe as traced by the positions of galaxies, quasars, and intergalactic hydrogen clouds. The signature of dark energy and other cosmological parameters is imprinted on this large-scale structure as it evolves over cosmic time. This project focused on maximizing the accurate extraction of information from redshift surveys by improving the algorithms and statistics applied across the chain of inference from raw pixels to high-level cosmological parameter estimation. At the low level, this project developed new techniques for calibrating and analyzing high-background, low signal-to-noise data from astronomical survey spectrographs to provide reliable three-dimensional maps of galaxies and quasars throughout the universe. At the high level, this project developed new statistical frameworks for understanding the completeness of redshift surveys and the underlying demographics of the galaxies that they observe, thereby allowing for a more accurate connection between survey results and theoretical models. This work contributes to maximizing the scientific reach of existing and planned surveys, and opens new potential feasibility for more ambitious surveys in the future.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

NASA NTRS2023

NASA’s Digital Information Platform to Accelerate the Transformation of the National Airspace System

In order to accelerate the digital transformation of airspace operations, a foundational framework and infrastructure for providing sustainable, data-driven, and cohesive decision-making digital services for both traditional and emergent air vehicles is being developed. The reference implementation of Digital Information Platform builds an ecosystem for the aviation community by providing access to a secure and trusted source of aviation data and services. Several key features and services have been implemented to enable secure data sharing, communication, and service registration on the Platform. The technical approach used to implement these features is presented here. NASA-developed integrated aviation data and machine learning based prediction services to optimize airspace operations are available on the Platform. These services are being evaluated in an operational environment by flight operators and the real-world benefits are being captured. The Platform fosters collaboration among industry and researchers to develop complex aviation services and the aim is to make it publicly accessible for consumption by the aviation community.

Digital Transformation↗

NASA NTRSDate not supplied

NASA’s Digital Information Platform to Accelerate the Transformation of the National Airspace System

Digital Transformation↗

NASA NTRS1996

Consideration in selecting crops for the human-rated life support system: a Linear Programming model

A Linear Programming model has been constructed which aids in selecting appropriate crops for CELSS (Controlled Environment Life Support System) food production. A team of Controlled Environment Agriculture (CEA) faculty, staff, graduate students and invited experts representing more than a dozen disciplines, provided a wide range of expertise in developing the model and the crop production program. The model incorporates nutritional content and controlled-environment based production yields of carefully chosen crops into a framework where a crop mix can be constructed to suit the astronauts' needs. The crew's nutritional requirements can be adequately satisfied with only a few crops (assuming vitamin mineral supplements are provided) but this will not be satisfactory from a culinary standpoint. This model is flexible enough that taste and variety driven food choices can be built into the model.

NASA Center JSC↗

NASA NTRS2004

OTIS 3.2 Software Released

Trajectory, mission, and vehicle engineers concern themselves with finding the best way for an object to get from one place to another. These engineers rely upon special software to assist them in this. For a number of years, many engineers have used the OTIS program for this assistance. With OTIS, an engineer can fully optimize trajectories for airplanes, launch vehicles like the space shuttle, interplanetary spacecraft, and orbital transfer vehicles. OTIS provides four modes of operation, with each mode providing successively stronger optimization capability. The most powerful mode uses a mathematical method called implicit integration to solve what engineers and mathematicians call the optimal control problem. OTIS 3.2, which was developed at the NASA Glenn Research Center, is the latest release of this industry workhorse and features new capabilities for parameter optimization and mission design. OTIS stands for Optimal Control by Implicit Simulation, and it is implicit integration that makes OTIS so powerful at solving trajectory optimization problems. Why is this so important? The optimization process not only determines how to get from point A to point B, but it can also determine how to do this with the least amount of propellant, with the lightest starting weight, or in the fastest time possible while avoiding certain obstacles along the way. There are numerous conditions that engineers can use to define optimal, or best. OTIS provides a framework for defining the starting and ending points of the trajectory (point A and point B), the constraints on the trajectory (requirements like "avoid these regions where obstacles occur"), and what is being optimized (e.g., minimize propellant). The implicit integration method can find solutions to very complicated problems when there is not a lot of information available about what the optimal trajectory might be. The method was first developed for solving two-point boundary value problems and was adapted for use in OTIS. Implicit integration usually allows OTIS to find solutions to problems much faster than programs that use explicit integration and parametric methods. Consequently, OTIS is best suited to solving very complicated and highly constrained problems.

Riehl, John P.↗

DOE OSTI2016

Reliability Assessment of Safety-Critical Network Communication in a Digitalized Nuclear Power Plant

In analog instrumentation and control (I and C) systems for nuclear power plants (NPPs), most connections are comprised of hardwired point-to-point types. Since they are based on analog technologies, they are fragile to noise and require analog-to-digital conversion time. Therefore, many NPPs have adopted communication network for the exchange of safety-critical data between programmable logic controllers (PLCs) in digital I and C systems to effectively accommodate a huge number of field controllers. However, the primary issue of digital network communication in a safety-critical system involves potential hazards, such as partial or total loss of communication between PLCs, which may result in a failure of safety critical signal generation when it is needed. Therefore, the probability that a safety-critical system in digitalized NPP becomes unsafe due to a network failure must be evaluated to quantify the risk of digital I and C system. In Korea, the Engineered Safety Feature-Component Control System (ESF-CCS) was developed as one of the digital safety-critical system in Advanced Power Reactor- 1400 (APR-1400). The function of a digital engineered safety feature (ESF) actuation system and field actuator controllers of conventional NPPs are performed by the ESF-CCS. In this system, safety-critical network, High Reliable- Safety Data Network (HR-SDN), was employed for the safety-critical data transmission from group controllers (GCs) to loop controllers (LCs). In this study, a framework for assessing the reliability of a HR-SDN network communication between GCs and LCs in the ESF-CCS in addition to a fault-tree model for ESF components considering network failure between GCs and LCs were developed to assess the plant risk effect of a newly developed digitalized ESF-CCS. Based on the case studies and cut set analysis, the risk effect of network failure on plant risk and the important risk contributors of network failure were quantitatively addressed. A framework for identifying the potential hazardous states of network communication in the ESFCCS was proposed. In addition, a fault-tree model for network communication failure was developed to estimate the risk effects of network failure between the GCs and LCs on ESF-CCS signal failure. The developed fault-tree model was then applied to several case studies. The fault-tree model of ESF-CCS signal failure for ESF components required for various mitigation actions regarding NPP DBAs was designed by considering the identified hazardous states of network failure that would result in a failure to provide input signals to the corresponding LC. As a sensitivity study, three case studies were performed based on the periodic test methods for hardware components in HR-SDN module and their test intervals in this study. The quantitative results for three case studies demonstrated that the probability of overall network communication failure, which was calculated as the sum of the failure probability associated with each failure cause, contributed up to 1.58% on the Small-LOCA CD frequency. The results also revealed the important basic events related to network failure in the case studies which included CCF of hardware and software in HR-SDN module. This study is expected to provide insight into the development of the fault-tree model for the network failure in digital I and C system and into the quantification of the risk effect of network failure for safety-critical data transmission in NPPs. As a further study, the risk effects of network failure in the ESF-CCS on the plant risk can be estimated in a more detailed manner by analyzing the failure modes and causes in a sub-component level and the fault detection coverage of the fault tolerance techniques for network failure implemented in ESF-CCS after the detailed configuration of ESF-CCS is decided. In terms of the failure of manual ESF actuation, the relationship among the human action failures must be investigated to consider multiple human error condition since ESF-CCS provides multiple manual actuation to assure the diversity of the system. Since the conventional HEP method cannot accommodate the multiple conditions in a fault tree, condition-based human reliability assessment (CBHRA) method or the dynamic human reliability modeling approach can be applied to include a complex relationship among the automated safety signal generation and the human operator's manual actuation, avoiding the optimistic estimation of HEP of the human action failure.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

NASA NTRS2015

Big Software for SmallSats: Adapting CFS to CubeSat Missions

Expanding capabilities and mission objectives for SmallSats and CubeSats is driving the need for reliable, reusable, and robust flight software. While missions are becoming more complicated and the scientific goals more ambitious, the level of acceptable risk has decreased. Design challenges are further compounded by budget and schedule constraints that have not kept pace. NASA's Core Flight Software System (cFS) is an open source solution which enables teams to build flagship satellite level flight software within a CubeSat schedule and budget. NASA originally developed cFS to reduce mission and schedule risk for flagship satellite missions by increasing code reuse and reliability. The Lunar Reconnaissance Orbiter, which launched in 2009, was the first of a growing list of Class B rated missions to use cFS. Large parts of cFS are now open source, which has spurred adoption outside of NASA. This paper reports on the experiences of two teams using cFS for current CubeSat missions. The performance overheads of cFS are quantified, and the reusability of code between missions is discussed. The analysis shows that cFS is well suited to use on CubeSats and demonstrates the portability and modularity of cFS code.

Open Source↗

DOE OSTI2019

Data Analytics for Electrical Distribution Systems with Micro PMUs (GMLC 1.4.9 Technical Report)

This report describes how electrical utilities with residential, industrial, commercial and government customers make decisions using Data Analytics (DA) applications and discusses how OpenFMB was leveraged to share that data among disparate types of devices for DA. OpenFMB is a data standard developed by utilities for distributed communication and control of power system assets. Here we explored how OpenFMB can be used for sharing analytics and what those analytics could be for a set of representative grid devices. A review of DA applications performed by electrical utilities and customers is presented. An overview of how the testbed we used was built and configured is summarized. Several experiments which were carried out to explore the capabilities of OpenFMB alongside other data sharing mechanisms for gathering sensor measurements and sharing analytics is also discussed. And finally a comparison of OpenFMB and LBNL’s SPARK framework is summarized. Today’s electrical utilities focus on monitoring the real-time customer consumptions, offering new real-time tariff models based on customer usage habits (rewards and punishments), providing energy peak during peak load times (plan energy generation and distribution), improving the load management for transformers and power lines, and controlling the energy and grid resources efficiently. On the other hand, the DA applications for residential customers are based on modifying the customer electricity usage habit to save money, making accurate and timely decisions for electrical billing. However, the DA applications for industrial, commercial and government customers focus on creating efficient programs to improve the environmental condition (reducing CO₂ emission), developing better load forecasting for industrial and/or commercial activities. In this project, a testbed was built to explore how the OpenFMB framework can be used to distribute data among various types of representative grid edge devices. Micro PMUs (Phasor Measurement Unit) were used to collect and transmit data to an OpenPDC server alongside relays with a framework configured with a system using OpenFMB to collect and transmit data. The testbed was composed of a physical asset based on a 60 Hz AC radial power system constructed using SI-GRID components. The power system consisted of a 3-phase 14 volts line-to-ground (24 volts line-to-line) power source, three 3-phase line emulators, a programmable resistive load bank, two smart relays, two micro PMUs, and a (SCADA) and Phasor Data Concentrator (PDC) computer. This testbed configuration allowed us to perform breaker operation tests collecting data from the micro PMUs and from the relays’ sensors. During the micro PMU breaker operation tests we collected the measured and estimated fundamental voltages, currents, frequency as well as the total true, reactive and apparent power. The displacement power factor from two micro PMUs located in parallel power lines was also used. The software steps for the implementation of the Synchrophasor system are explained in detail in this report. The setting (1-2-3) and data collection (4-5) phases were performed with a free download open source software. In the setting phase, the micro PMUs were set (1), the data stream for each micro PMU was validated, and the connection and configuration files were created (2). The PDC computer was set using the connection and configuration files of the micro PMUs (3). In the data collection phase, the binary data from the micro PMUs was collected (4), and the binary data files of the micro PMUs was converted to analyze the test results (5). OpenFMB was configured to use protocol translators to read Modbus and transform the reading into the OpenFMB data model to be read for DA applications.Our experiments showed that by leveraging the OpenFMB data model and the micro PMUs together we could obtain better situational awareness of network faults, which in some cases could lead to failures in the system and would be less perceivable otherwise. For example, in one experiment the fundamental RMS current angle, and the fundamental displacement power factor (estimated by the ratio between the measured real and apparent total power) had a disturbance at the micro PMU connected to the beginning of the parallel power line because the breaker was opened without the operators or SCADA system’s knowledge, and no current was available. Based on the breaker state scenarios and micro PMU locations, the DA applications using the current angle and displacement power factor from the micro PMUs should be studied in detail to avoid a non-desired measurement that could affect the decision from the DA. Also, the sample rates for PMU, Relay and micro PMU devices were compared. The DA application improved the control and operation between the electrical utilities and their customers (residential, industrial, transportation, commercial and government). The higher the sample rate, the better the quality of the measurement for DA estimations.

42 ENGINEERING↗

NASA NTRS2003

Development of Methodologies for IV and V of Neural Networks

Non-deterministic systems often rely upon neural network (NN) technology to "lean" to manage flight systems under controlled conditions using carefully chosen training sets. How can these adaptive systems be certified to ensure that they will become increasingly efficient and behave appropriately in real-time situations? The bulk of Independent Verification and Validation (IV&V) research of non-deterministic software control systems such as Adaptive Flight Controllers (AFC's) addresses NNs in well-behaved and constrained environments such as simulations and strict process control. However, neither substantive research, nor effective IV&V techniques have been found to address AFC's learning in real-time and adapting to live flight conditions. Adaptive flight control systems offer good extensibility into commercial aviation as well as military aviation and transportation. Consequently, this area of IV&V represents an area of growing interest and urgency. ISR proposes to further the current body of knowledge to meet two objectives: Research the current IV&V methods and assess where these methods may be applied toward a methodology for the V&V of Neural Network; and identify effective methods for IV&V of NNs that learn in real-time, including developing a prototype test bed for IV&V of AFC's. Currently. no practical method exists. lSR will meet these objectives through the tasks identified and described below. First, ISR will conduct a literature review of current IV&V technology. TO do this, ISR will collect the existing body of research on IV&V of non-deterministic systems and neural network. ISR will also develop the framework for disseminating this information through specialized training. This effort will focus on developing NASA's capability to conduct IV&V of neural network systems and to provide training to meet the increasing need for IV&V expertise in such systems.

Taylor, Brian↗

DOE OSTI2024

An open-source framework for balancing computational speed and fidelity in production cost models

Studies of bulk power system operations need to incorporate uncertainty and sensitivity analyses, especially around exposure to weather and climate variability and extremes, but this remains a computational modeling challenge. Commercial production cost models (PCMs) have shorter runtimes, but also important limitations (opacity, license restrictions) that do not fully support stochastic simulation. Open-source PCMs represent a potential solution. They allow for multiple, simultaneous runs in high-performance computing environments and offer flexibility in model parameterization. Yet, developers must balance computational speed (i.e. runtime) with model fidelity (i.e. accuracy). In this paper, we present Grid Operations (GO), a framework for instantiating open-source, scale-adaptive PCMs. GO allows users to search across parameter spaces to identify model versions that appropriately balance computational speed and fidelity based on experimental needs and resource limits. Results provide generalizable insights on how to navigate the fidelity and computational speed tradeoff through parameter selection. We show that models with coarser network topologies can accurately mimic market operations, sometimes better than higher-resolution models. It is thus possible to conduct large simulation experiments that characterize operational risks related to climate and weather extremes while maintaining sufficient model accuracy.

42 ENGINEERING↗

DOE OSTI2017

Analysis of, and defense against, spurious actuations and other incorrect behaviors of digital control systems - 390

Modern digital instrumentation and control (I and C) systems offer nearly unlimited functional capability. However, the complexity of their design (including their system software and application software) is significantly higher than that of conventional, hardwired systems, to the point that it is generally impossible to demonstrate that there are no residual design errors, even when the best development and verification techniques have been applied. When activated by specific conditions, design errors could result in systematic failures, i.e., failures that occur deterministically each time and wherever an activating condition is present. Redundancy could be defeated when the same design error affects multiple channels or systems, and the activating condition affects several of these channels or systems. In the case of safety I and C systems, most of the functions are poised protection functions that must be actuated when and only when a demand situation occurs in the plant. In nuclear power plants, the most dangerous failure mode for such functions generally is failure to actuate, and many measures are taken to protect from such failure mode. This paper considers the other failure modes of safety I and C functions, and also the failure modes of the other I and C functions that are less important to safety. It is not limited to poised functions, and considers other types of functions such as regulation functions or human interface functions. It proposes a framework for analyzing and providing defense against spurious actuations and other incorrect behaviors from digital I and C systems directly interacting with the plant process or with operators: these might be useful for example to justify that design bases for reactor protection are adequate, or to ensure plant performance and availability. (authors)

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

DOE OSTI2024

An Integrated Framework for Risk Assessment of Safety-related Digital Instrumentation and Control Systems in Nuclear Power Plants: Methodology Advancement and Application

This report documents activities performed by Idaho National Laboratory (INL) during fiscal year (FY) 2024 for the U.S. Department of Energy (DOE) Light Water Reactor Sustainability (LWRS) Program, Risk Informed Systems Analysis (RISA) Pathway, Digital Instrumentation and Control (DI&C) Risk Assessment project. The goal of the RISA Pathway is to optimize safety margins and minimize uncertainties to achieve economic efficiencies while maintaining high levels of safety. This is accomplished by providing scientific basis to better represent safety margins and factors that contribute to cost and safety, and by developing new technologies that reduce operating costs. The research efforts for FY 2024 encompass methodology refinement and exploration. The efforts include: (1) The implementation of a natural language processing tool to expedite key aspects of the reliability analysis methods developed by INL; (2) advances to support intersystem CCF analysis by providing guidance for and identification of coupling mechanisms that may contribute to CCF; (3) the investigation of how generative artificial intelligence tools can aid in hazard analysis and diversity and defense in depth (i.e., D3) assessments; (4) Industry collaboration, allowing the demonstration of and INL's risk assessment tools to support risk assessment of DI&C systems at early and late stages of development; (4) a roadmap for the development of a software for each of INL's risk assessment tools; (5) The development of a theory and methodology manual for a risk quantification methodology; (6) the development of a reliability analysis for machine learning (ML)-integrated control systems.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

DOE OSTI2019

The Arctic-Boreal vulnerability experiment model benchmarking system

Abstract NASA’s Arctic-Boreal Vulnerability Experiment (ABoVE) integrates field and airborne data into modeling and synthesis activities for understanding Arctic and Boreal ecosystem dynamics. The ABoVE Benchmarking System (ABS) is an operational software package to evaluate terrestrial biosphere models against key indicators of Arctic and Boreal ecosystem dynamics, i.e.: carbon biogeochemistry, vegetation, permafrost, hydrology, and disturbance. The ABS utilizes satellite remote sensing data, airborne data, and field data from ABoVE as well as collaborating research networks in the region, e.g.: the Permafrost Carbon Network, the International Soil Carbon Network, the Northern Circumpolar Soil Carbon Database, AmeriFlux sites, the Moderate Resolution Imaging Spectroradiometer, the Orbiting Carbon Observatory 2, and the Soil Moisture Active Passive mission. The ABS is designed to be interactive for researchers interested in having their models accurately represent observations of key Arctic indicators: a user submits model results to the system, the system evaluates the model results against a set of Arctic-Boreal benchmarks outlined in the ABoVE Concise Experiment Plan, and the user then receives a quantitative scoring of model strengths and deficiencies through a web interface. This interactivity allows model developers to iteratively improve their model for the Arctic-Boreal Region by evaluating results from successive model versions. We show here, for illustration, the improvement of the Lund–Potsdam–Jena-Wald Schnee und Landschaft (LPJwsl) version model through the ABoVE ABS as a new permafrost module is coupled to the existing model framework. The ABS will continue to incorporate new benchmarks that address indicators of Arctic-Boreal ecosystem dynamics as they become available.

Stofferahn, Eric (ORCID:0000000169604193)↗

DOE OSTI2014

TU-C-17A-03: An Integrated Contour Evaluation Software Tool Using Supervised Pattern Recognition for Radiotherapy

Purpose: Radiotherapy (RT) contours delineated either manually or semiautomatically require verification before clinical usage. Manual evaluation is very time consuming. A new integrated software tool using supervised pattern contour recognition was thus developed to facilitate this process. Methods: The contouring tool was developed using an object-oriented programming language C# and application programming interfaces, e.g. visualization toolkit (VTK). The C# language served as the tool design basis. The Accord.Net scientific computing libraries were utilized for the required statistical data processing and pattern recognition, while the VTK was used to build and render 3-D mesh models from critical RT structures in real-time and 360° visualization. Principal component analysis (PCA) was used for system self-updating geometry variations of normal structures based on physician-approved RT contours as a training dataset. The inhouse design of supervised PCA-based contour recognition method was used for automatically evaluating contour normality/abnormality. The function for reporting the contour evaluation results was implemented by using C# and Windows Form Designer. Results: The software input was RT simulation images and RT structures from commercial clinical treatment planning systems. Several abilities were demonstrated: automatic assessment of RT contours, file loading/saving of various modality medical images and RT contours, and generation/visualization of 3-D images and anatomical models. Moreover, it supported the 360° rendering of the RT structures in a multi-slice view, which allows physicians to visually check and edit abnormally contoured structures. Conclusion: This new software integrates the supervised learning framework with image processing and graphical visualization modules for RT contour verification. This tool has great potential for facilitating treatment planning with the assistance of an automatic contour evaluation module in avoiding unnecessary manual verification for physicians/dosimetrists. In addition, its nature as a compact and stand-alone tool allows for future extensibility to include additional functions for physicians’ clinical needs.

62 RADIOLOGY AND NUCLEAR MEDICINE↗

DOE OSTI2014

Pervasive Restart In MOOSE-based Applications

Multiphysics applications are inherently complicated. Solving for multiple, interacting physical phenomena involves the solution of multiple equations, and each equation has its own data dependencies. Feeding the correct data to these equations at exactly the right time requires extensive effort in software design. In an ideal world, multiphysics applications always run to completion and produce correct answers. Unfortunately, in reality, there can be many reasons why a simulation might fail: power outage, system failure, exceeding a runtime allotment on a supercomputer, failure of the solver to converge, etc. A failure after many hours spent computing can be a significant setback for a project. Therefore, the ability to “continue” a solve from the point of failure, rather than starting again from scratch, is an essential component of any high-quality simulation tool. This process of “continuation” is commonly termed “restart” in the computational community. While the concept of restarting an application sounds ideal, the aforementioned complexities and data dependencies present in multiphysics applications make its implementation decidedly non-trivial. A running multiphysics calculation accumulates an enormous amount of “state”: current time, solution history, material properties, status of mechanical contact, etc. This “state” data comes in many different forms, including scalar, tensor, vector, and arbitrary, application-specific data types. To be able to restart an application, you must be able to both store and retrieve this data, effectively recreating the state of the application before the failure. When utilizing the Multiphysics Object Oriented Simulation Environment (MOOSE) framework developed at Idaho National Laboratory, this state data is stored both internally within the framework itself (such as solution vectors and the current time) and within the applications that use the framework. In order to implement restart in MOOSE-based applications, the total state of the system (both within the framework and without) must be stored and retrieved. To this end, the MOOSE team has implemented a “pervasive” restart capability which allows any object within MOOSE (or within a MOOSE-based application) to be declared as “state” data, and handles the storage and retrieval of said data.

97 MATHEMATICS AND COMPUTING↗

NASA NTRS2019

The Arctic-Boreal vulnerability experiment model benchmarking system

NASA's Arctic-Boreal Vulnerability Experiment (ABoVE) integrates field and airborne data into modeling and synthesis activities for understanding Arctic and Boreal ecosystem dynamics. The ABoVE Benchmarking System (ABS) is an operational software package to evaluate terrestrial biosphere models against key indicators of Arctic and Boreal ecosystem dynamics, i.e.: carbon biogeochemistry, vegetation, permafrost, hydrology, and disturbance. The ABS utilizes satellite remote sensing data, airborne data, and field data from ABoVE as well as collaborating research networks in the region, e.g.: the Permafrost Carbon Network, the International Soil Carbon Network, the Northern Circumpolar Soil Carbon Database, AmeriFlux sites, the Moderate Resolution Imaging Spectroradiometer, the Orbiting Carbon Observatory 2, and the Soil Moisture Active Passive mission. The ABS is designed to be interactive for researchers interested in having their models accurately represent observations of key Arctic indicators: a user submits model results to the system, the system evaluates the model results against a set of Arctic-Boreal benchmarks outlined in the ABoVE Concise Experiment Plan, and the user then receives a quantitative scoring of model strengths and deficiencies through a web interface. This interactivity allows model developers to iteratively improve their model for the Arctic-Boreal Region by evaluating results from successive model versions. We show here, for illustration, the improvement of the Lund–Potsdam–Jena-Wald Schnee und Landschaft (LPJwsl) version model through the ABoVE ABS as a new permafrost module is coupled to the existing model framework. The ABS will continue to incorporate new benchmarks that address indicators of Arctic-Boreal ecosystem dynamics as they become available.

ABoVE↗

DOE OSTI2018

Biophysical study of human induced Pluripotent Stem Cell-Derived cardiomyocyte structural maturation during long-term culture

Highlights: • hiPSC-CM structural maturation was quantified at multiple stages during 120 days. • User friendly custom-written software platform to quantify sarcomere length. • hiPSC-CMs with significant growth in cardiac fiber density and sarcomere length. • Peak of 40% multinucleated hiPSC-CMs observed at day 90. • CM content in microtissues matured to 22%, similar to adult left ventricle tissues. Human induced Pluripotent Stem Cell-derived cardiomyocytes (hiPSC-CMs) have an enormous potential for the development of drug screening and modeling cardiac disease platforms. However, early hiPSC-CMs usually exhibit low structural development, precluding the applicability of these cells. Here, we follow during 120 days the progressive structural maturation of hiPSC-CM microtissues obtained using the Wnt signaling modulation protocol. For this purpose, we designed a user friendly custom-written program to quantify cardiac fiber alignment and sarcomere length. Cardiomyocyte shape, cardiac fiber density and multinucleation were also analyzed. Derived cardiomyocytes showed significant progression in cardiomyocyte fiber density and sarcomere length during the long-term culture, with a peak at day 90 of 40% multinucleated cells. In addition, cardiomyocyte microtissues remained functional with progressive maturation leading to a decrease in the percentage of cTnT positive cells from 59% to 22% at day 120, a value similar to the content present in tissues of the adult left ventricle. These data and the framework that we provide to quantify cardiomyocyte structural features can be important to set new metrics to develop applications for drug screening and disease modeling.

60 APPLIED LIFE SCIENCES↗

DOE OSTI2017

Resilience Design Patterns - A Structured Approach to Resilience at Extreme Scale (version 1.2)

We developed a new structured approach to the management of HPC resilience using the concept of resilience-based design patterns. In general, a design pattern is a repeatable solution to a commonly occurring problem. We identified the well-known solutions that are commonly used to deal with faults, errors and failures in HPC systems. In the initial design patterns specification (version 1.0), we described the various solutions, which address specific problems in the design of resilient HPC environments, in the form of patterns. Each pattern describes a problem caused by a fault, error or failure event in an HPC environment, and then describes the core of the solution of the problem in such a way that this solution may be adapted to different systems and implemented at different layers of the system stack. The catalog of these resilience design patterns provides designers with a collection of design elements. To construct complete resilience solutions using combinations of various patterns, we defined a framework that enhances HPC designers’ understanding of the important constraints and the opportunities for the design patterns to be implemented and deployed at various layers of the system stack. The design framework is also useful for establishing interfaces and mechanisms to coordinate flexible fault management across hardware and software components, as well as to consider the trade-off between performance, resilience, and power consumption when constructing a solution. The resilience design patterns specification version 1.1 included more detailed explanations of the pattern solutions, the context in which the patterns are applicable, and the implications for hardware or software design. It also provided several additional examples and detailed case studies to demonstrate the use of patterns to build realistic solutions. In this version 1.2 of the specification document, we have improved the pattern descriptions, including graphical representations of the pattern components. These improvements are largely based on critical comments, feedback and suggestions received from pattern experts and readers of the previous versions of the specification. The pattern classification has been modified to further clarify the relationships between pattern categories. This version of the specification also introduces a pattern language for resilience design patterns. The pattern language presents the patterns in the catalog as a network, revealing the relations among the resilience patterns. The language provides designers with the means to explore alternative techniques for handling a specific fault model that may have different effciency and complexity characteristics. Using the pattern language also enables the design and implementation of comprehensive resilience solutions as a set of interconnected resilience patterns that can be instantiated across layers of the system stack. The overall goal of this work is to provide hardware and software designers, as well as the users and operators of HPC systems, a systematic methodology for the design and evaluation of resilience technologies in HPC systems that keep scientific applications running to a correct solution in a timely and cost-effcient manner despite frequent faults, errors, and failures of various types.

97 MATHEMATICS AND COMPUTING↗