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At least 1,765 records · Page 98

Death-domain associated protein-6 (DAXX) mediated apoptosis in hantavirus infection is counter-balanced by activation of interferon-stimulated nuclear transcription factors

Hantaviruses are negative strand RNA species that replicate predominantly in the cytoplasm. They also activate numerous cellular responses, but their involvement in nuclear processes is yet to be established. Using human umbilical vein endothelial cells (HUVECs), this study investigates the molecular finger-print of nuclear transcription factors during hantavirus infection. The viral-replication-dependent activation of pro-myelocytic leukemia protein (PML) was followed by subsequent localization in nuclear bodies (NBs). PML was also found in close proximity to activated Sp100 nuclear antigen and interferon-stimulated gene 20 kDa protein (ISG-20), but co-localization with death-domain associated protein-6 (DAXX) was not observed. These data demonstrate that hantavirus triggers PML activation and localization in NBs in the absence of DAXX-PLM-NB co-localization. The results suggest that viral infection interferes with DAXX-mediated apoptosis, and expression of interferon-activated Sp100 and ISG-20 proteins may indicate intracellular intrinsic antiviral attempts.

60 APPLIED LIFE SCIENCES↗

Alignments of the galaxies in and around the Virgo cluster with the local velocity shear

Observational evidence is presented for the alignment between the cosmic sheet and the principal axis of the velocity shear field at the position of the Virgo cluster. The galaxies in and around the Virgo cluster from the Extended Virgo Cluster Catalog that was recently constructed by Kim et al. are used to determine the direction of the local sheet. The peculiar velocity field reconstructed from the Sloan Digital Sky Survey Data Release 7 is analyzed to estimate the local velocity shear tensor at the Virgo center. Showing first that the minor principal axis of the local velocity shear tensor is almost parallel to the direction of the line of sight, we detect a clear signal of alignment between the positions of the Virgo satellites and the intermediate principal axis of the local velocity shear projected onto the plane of the sky. Furthermore, the dwarf satellites are found to appear more strongly aligned than their normal counterparts, which is interpreted as an indication of the following. (1) The normal satellites and the dwarf satellites fall in the Virgo cluster preferentially along the local filament and the local sheet, respectively. (2) The local filament is aligned with the minor principal axis of the local velocity shear while the local sheet is parallel to the plane spanned by the minor and intermediate principal axes. Our result is consistent with the recent numerical claim that the velocity shear is a good tracer of the cosmic web.

79 ASTRONOMY AND ASTROPHYSICS↗

CAFE AU LAIT: Compute-Aware Federated Augmented Low-Rank AI Training

Federated finetuning is crucial for unlocking the knowledge embedded in pretrained Large Language Models (LLMs) when data are geographically distributed across clients. Unlike finetuning with data from a single institution, federated finetuning allows collaboration across multiple institutions, enabling the utilization of diverse and decentralized datasets while preserving data privacy. Given the high computing costs of LLM training and the emphasis on energy efficiency in Federated Learning (FL), Low-Rank Adaptation (LoRA) has emerged as a widely adopted algorithm due to its significantly reduced number of trainable parameters. However, this assumes that all data silos have the necessary computing resources to compute local updates of LLMs. Nevertheless, in practice, the computing resources across clients are highly heterogeneous: while some may have access to hundreds of GPUs, others might have limited or no GPU access. Recently, federated finetuning using synthetic data has been proposed, allowing clients to participate in a collaborative training run without training LLMs locally. However, our experimental results reveal a performance gap between models trained using synthetic data and those trained using local updates. Motivated by the observed heterogeneity in computing resources and the performance gap, we propose a novel two-stage algorithm that leverages the storage and computing capabilities of a strong server. In the first stage, under the coordination of the strong server, clients with limited computing resources collaborate to generate synthetic data, which is transferred to and stored on the strong server. In the second stage, the strong server uses this synthetic data on behalf of the resource-constrained clients to perform federated LoRA finetuning alongside clients with sufficient computing resources. This approach ensures that all clients can participate in the finetuning process. Experimental results demonstrate that incorporating local updates from even a small fraction of clients improves performance compared to using synthetic data for all clients. Furthermore, we incorporate the Gaussian mechanism in both stages to guarantee client-level differential privacy.

Wang, Jiayi [ORNL]↗

Plate motions and deformations from geologic and geodetic data

The very long baseline interferometry (VLBI) measurements made in the western U.S. since 1979 provide discrete samples of the temporal and spatial deformation field. The interpretation of the VLBI derived rates of deformation requires an examination of geologic information and more densely sampled ground based geodetic data. Triangulation and trilateration data measured on two regional networks, one in the central Mojave Desert and one in the Coast Ranges east of the San Andreas fault, were processed. At the spatial scales spanned by these local geodetic networks, auxiliary geologic and geophysical data were utilized to examine the relation between measured incremental strain and the accommodation of strain seen in local geologic structures, strain release in earthquakes, and principal stress directions inferred from in situ measurements. VLBI data was also processed from stations distributed across the Pacific-North America plate boundary zone in the western U.S. The VLBI data were used to constrain the integrated rate of deformation across portions of the continental plate boundary in California and to provide a tectonic framework to interpret regional geodetic and geologic studies.

Jordan, Thomas H.↗

Data synergy between leaf area index and clumping index Earth Observation products using photon recollision probability theory

Clumping index (CI) is a measure of foliage aggregation relative to a random distribution of leaves in space. The CI can help with estimating fractions of sunlit and shaded leaves for a given leaf area index (LAI) value. Both the CI and LAI can be obtained from global Earth Observation data from sensors such as the Moderate Resolution Imaging Spectrometer (MODIS). Here, the synergy between a MODIS-based CI and a MODIS LAI product is examined using the theory of spectral invariants, also referred to as photon recollision probability (‘p-theory’), along with raw LAI-2000/2200 Plant Canopy Analyzer data from 75 sites distributed across a range of plant functional types. The p-theory describes the probability (p-value) that a photon, having intercepted an element in the canopy, will recollide with another canopy element rather than escape the canopy. We show that empirically-based CI maps can be integrated with the MODIS LAI product. Our results indicate that it is feasible to derive approximate p-values for any location solely from Earth Observation data. This approximation is relevant for future applications of the photon recollision probability concept for global and local monitoring of vegetation using Earth Observation data.

54 ENVIRONMENTAL SCIENCES↗

Hard X-ray nanoimaging method using local diffraction from metal wire

A simple hard X-ray imaging method achieving a high spatial resolution is proposed. Images are obtained by scanning a metal wire through the wave field to be measured and rotating the sample to collect data for back projection calculations; the local diffraction occurring at the edges of the metal wire operates as a narrow line probe. In-line holograms of a test sample were obtained with a spatial resolution of better than 100 nm. The potential high spatial resolution of this method is shown by calculations using diffraction theory.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Examining the Link Between Food Prices and Food Insecurity: a Multi-Level Analysis of Maize Price and Birthweight in Kenya

In developing countries where many poor people rely on rainfed, locally produced food for the majority of their caloric intake, shifts in climate and weather patterns can dramatically reduce agricultural productivity. The reduction in agricultural productivity reduces overall food availability and ultimately impacts food accessibility, putting millions of people at risk for malnutrition. In this project we focus on Kenya where roughly a third of households are food insecure. We examine the relationship of the price of maize and low birth weight to help quantify the impact of local food prices on one outcome of household food insecurity. Using spatially referenced data from recent Kenyan Demographic and Health Survey datasets, price data, livelihood information, and a remotely sensed-based measure of local growing season productivity, we develop a dataset linking pregnancies occurring from 2001 to 2008 to the spatially and temporally relevant maize price data. We construct several regression models to examine the impact of local maize prices and remotely sensed based estimates of crop production on infant birth weight - specifically low birth weight. The results of the models highlight the importance of including community crop production to evaluate maize price impacts on low birth weight outcomes. Also, because of the positive correlation between pre-pregnancy maize prices and birth weight, the results suggest that some households may benefit from high prices or that high prices may impact the number of conceptions. More generally, our work demonstrates that multilevel models that account for community-level variation are important for disentangling these complex relationships and can contribute to the discussion of how to design more effective food policies.

Low birth weight↗

An Overview of the Earth Observing System Moderate Resolution Imaging Spectroradiometer (MODIS) Data Products and Availability for Environmental Applications and Global Change Studies

The Moderate Resolution Imaging Spectroradiometer (MODIS) on the Earth Observing System (EOS) Terra Mission began to produce data in February 2000. The Terra MODIS is in a sun-synchronous orbit going north to south in the daylight portion of the orbit crossing the equator at about 1030 hours local time. The spacecraft, instrument, and data systems are performing well and are producing a wide variety of data products useful for scientific and applications studies in relatively consistent fashion extending from November 2000 to the present. Within the approximately 40 MODIS data products, several are new and represent powerful and exciting capabilities such the ability to provide observations over the globe of fire occurrences, microphysical properties of clouds and sun-stimulated fluorescence from phytoplankton in the surface waters of the ocean. The remainder of the MODIS products exceeds or, at a minimum, matches the capabilities of products from heritage sensors such as, for example, the Advanced Very High Resolution Radiometer (AVHRR). Efforts are underway to provide data sets for the greater Earth science community and to improve access to these products at the various Distributed Active Archive Centers (DAACs) or through Direct Broadcast (DB) stations. The EOS Aqua mission was launched successfully May 4,2002 with another MODIS on it. The Aqua spacecraft operates in a sun-synchronous orbit going south to north in the daylight portion of the orbit crossing the equator at approximately 1330 hours local time. Subsequently the Aqua MODIS observations will substantially add to the capabilities of the Terra MODIS for environmental applications and global change studies.

Salomonson, V. V.↗

ASSESSMENT OF MULTIPHASE CFD WITH ZERO CLOSURE MODEL FOR BOILING WATER REACTOR FUEL ASSEMBLIES

Extension of existing boiling closures to the high void fraction conditions of BWRs is one of challenges for M-CFD applications. This paper presents the assessment of an Eulerian M-CFD model with Zero closure model that has been specifically designed for two-phase flow and heat transfer applications in BWR fuel assemblies. The baseline Zero closure aims at including the simplest and most robust representation of the key physical mechanisms, rather than aiming at absolute accuracy of the predictions. The capabilities of M-CFD with Zero were evaluated against the international OECD/NRC BFBT benchmark data through the comparative analyses of local void fraction, sub-channel void fraction error and exit quality. INL high performance computing system has been employed to demonstrate the scalability of the M-CFD application to nuclear reactor fuel assemblies. The M-CFD simulation results show a good agreement with the experimental data for both quantitative and qualitative results, with the highest uncertainty being observed in the prediction of the local void fraction profile at low void fraction condition. This paper presents a recent view of the best practices for M-CFD of BWR fuel assemblies to provide a useful reference to identify and overcome common challenges in the applications of M-CFD tools. We provide recommendations for geometric modeling, mesh generation and solver configurations to optimize the methodology application.

97 MATHEMATICS AND COMPUTING↗

Using Pilot Jobs and CernVM File System for Simplified Use of Containers and Software Distribution

High Energy Physics (HEP) experiments entail an abundance of computing resources, i.e. sites, to run simulations and analyses by processing data. This requirement is fulfilled by local batch farms, grid sites, private/commercial clouds, and supercomputing centers via High Throughput Computing (HTC). The growing needs of such experiments and resources being prone to trends of heterogeneity make it difficult for physicists to handle these resources directly. Additionally, HEP collaborations heavily rely on data and software releases, typically in the order of tens of gigabytes, while conducting simulations and analyses. Hence, aspects of scalability, reliability, and maintenance become crucial with regards to the distribution of the necessary data and software stack. The GlideinWMS [4] framework helps with the resource management problem by using pilot jobs, aka Glideins, to provision reliable elastic virtual clusters. Glideins are submitted to unreliable heterogeneous resources which are validated and customized by the Glideins to make the worker nodes available for end-user job execution. On the other hand, the CernVM File System (CernVM-FS or CVMFS) [1] helps with data distribution. It is a write-once, read-everywhere filesystem used to deploy scientific software to thousands of nodes on a worldwide distributed computing infrastructure. CVMFS is based on the Hyper Text Transfer Protocol and has been widely used within the particle physics community for (1) distributing experiment software and data such as calibrations, and (2) facilitating containerization by efficiently hosting container images along with providing containerization software, especially Singularity [3] GlideinWMS relies on CVMFS installed locally on the computing resources to satisfy the experiments' software needs. This requires system administrators' effort to install and maintain CVMFS at the sites and limits the use of sites, especially HPC resources, that do not have CVMFS installed. This poster presents a solution, taking advantage of Glideins to provide CVMFS at most sites without the need for a local installation. Doing so expands the pool of resources available for HEP experiments and reduces the effort of system administrators for current resources. Additionally, the proposed solution allows GlideinWMS to also start Singularity [3], a containerization software that can run unprivileged, on sites where neither CVMFS nor Singularity are available, including HPC sites. The benefits provided by this solution are: (1) lower overhead for site administrators in that they have less software to install, (2) an expanded pool of resources that run user jobs with easy access to software and data provided by CVMFS, thus making life easier for the scientists, and (3) improved flexibility to use HPC resources by enabling GlideinWMS pilot jobs to support HPC sites.

Urs, Namratha↗

Data Management in the Continuum: Cross-facility Object-based Data Transfers

Scientific workflows are evolving from relying on a monolithic storage subsystem at a single High-Performance Computing (HPC) facility to using geographically distributed file systems, repositories, and cloud storage. As a result, storing, accessing, transferring, and managing scientific data have become highly complex and prone to performance inefficiencies. This paper delves into these challenges by exploring an optimized end-to-end interface designed to seamlessly connect various local and remote storage systems, enabling efficient data movement of objects across HPC–Cloud and HPC–HPC environments. We showcase this capability through an object-focused data management runtime system, discuss the effects of relaxed consistency semantics in distributed object scenarios, and illustrate its application in an earthquake simulation workflow. Besides reducing the amount of data by selectively transferring regions of interest, our facility-local results achieved a speedup of 45 × over an optimized HDF5 usage and 15 × over the HDF5 with caching by using the new interface in PDC-XF.

Bez, Jean Luca↗

Accelerating Structure–Property Relationship Discovery with Multimodal Machine Learning and Self-Driving Microscopy

Microscopy combined with local spectroscopy is widely used to correlate nanoscale structure with functional properties in materials, but conventional measurements rely heavily on human-selected sampling locations and predefined targets, limiting data set diversity and the potential for discovery. Here, we present a framework that integrates autonomous microscopy with dual-novelty deep kernel learning (DN-DKL) for adaptive data acquisition and a dual variational autoencoder (VAE) for representation learning. DN-DKL actively guides the microscopy toward structurally and spectroscopically novel regions, enabling efficient collection of large spectral data sets. Dual-VAE embeds local structures and spectroscopic responses into a shared latent manifold that serves as a structure–property relationship map. We applied this framework for the investigation of halide perovskite films by using conductive atomic force microscopy. The results reveal distinct hysteresis behaviors that are linked to specific nanoscale structural motifs, including grain boundary junction points that show hysteresis under different bias conditions and asymmetric grain boundaries that suppress the charge transport. This framework establishes a general strategy that leverages the complementary strengths of self-driving microscopy, machine learning, and human expertise to accelerate scientific discovery in functional materials.

atomic force microscopy↗

A fast-time-response extreme ultraviolet spectrometer for measurement of impurity line emissions in the Experimental Advanced Superconducting Tokamak

A flat-field extreme ultraviolet (EUV) spectrometer working in the 20-500 Å wavelength range with fast time response has been newly developed to measure line emissions from highly ionized tungsten in the Experimental Advanced Superconducting Tokamak (EAST) with a tungsten divertor, while the monitoring of light and medium impurities is also an aim in the present development. A flat-field focal plane for spectral image detection is made by a laminar-type varied-line-spacing concave holographic grating with an angle of incidence of 87°. A back-illuminated charge-coupled device (CCD) with a total size of 26.6 × 6.6 mm{sup 2} and pixel numbers of 1024 × 255 (26 × 26 μm{sup 2}/pixel) is used for recording the focal image of spectral lines. An excellent spectral resolution of Δλ{sub 0} = 3-4 pixels, where Δλ{sub 0} is defined as full width at the foot position of a spectral line, is obtained at the 80-400 Å wavelength range after careful adjustment of the grating and CCD positions. The high signal readout rate of the CCD can improve the temporal resolution of time-resolved spectra when the CCD is operated in the full vertical binning mode. It is usually operated at 5 ms per frame. If the vertical size of the CCD is reduced with a narrow slit, the time response becomes faster. The high-time response in the spectral measurement therefore makes possible a variety of spectroscopic studies, e.g., impurity behavior in long pulse discharges with edge-localized mode bursts. An absolute intensity calibration of the EUV spectrometer is also carried out with a technique using the EUV bremsstrahlung continuum at 20-150 Å for quantitative data analysis. Thus, the high-time resolution tungsten spectra have been successfully observed with good spectral resolution using the present EUV spectrometer system. Typical tungsten spectra in the EUV wavelength range observed from EAST discharges are presented with absolute intensity and spectral identification.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

An analysis of Skylab II S193 scatterometer data

Skylab II S193 scatterometer data for the passes of June 5, 1973, over the Gulf of Mexico and June 6, 1973, over Pacific Hurricane AVA were analyzed. These two passes were chosen since it was possible to correlate the scattering data with simultaneous measurements of the local ocean wind conditions. The S193 scatterometer measured the radar cross section of the ocean at 13.9 GHz (Ku-band) as a function of incidence angle. The S193 data of June 5, 1973, when a practically uniform wind field was present, show reasonable agreement with the Naval Research Laboratory (NRL) empirical and theoretical models. The data of June 6, 1973, are more complex, due to rapid variations in wind speeds and directions around Hurricane AVA. The NRL empirical model was interpolated to account for variation in wind heading relative to the S193 antenna pointing direction; a reasonable comparison could then be made with the corresponding S193 data of June 6, 1973.

Jordan, A. K.↗

Recent progress in the Urbana MST radar

The Urbana radar, which operates at 40.92 MHz with a peak power of about 1.2 MW into a 100 x 120 m phased array antenna was improved. An accelerated data-acquisition system, a beam-steering system, and a transmit/receive switch were installed. With these changes, the radar is in regular operations for two hours every day around local noon gathering stratospheric and mesospheric data. Special campaigns are mounted in addition under severe weather conditions.

Bowhill, S. A.↗

An Overview of the Earth Observing System Moderate Resolution Imaging Spectroradiometer (MODIS) Data Products Status and Availability for Environmental Applications and Global Change Studies

The Moderate Resolution Imaging Spectroradiometer (MODIS) on the Earth Observing System (EOS) Terra Mission began to produce data in February 2000. The Terra MODIS is in a sun-synchronous orbit going north to south in the daylight portion of the orbit crossing the equator at about 1030 hours local time. The spacecraft, instrument, and data systems are performing well and are producing a wide variety of data products useful for scientific and applications studies in relatively consistent fashion extending from November 2000 to the present. Within the approximately 40 MODIS data products, several are new and represent powerful and exciting capabilities such the ability to provide observations over the globe of fire occurrences, microphysical properties of clouds and sun-stimulated fluorescence from phytoplankton in the surface waters of the ocean. The remainder of the MODIS products exceed or, at a minimum, match the capabilities of products from heritage sensors such as, for example, the Advanced Very High Resolution Radiometer (AVHRR). Efforts are underway to provide data sets for the greater Earth science community and to improve access to these products at the various Distributed Active Archive Centers (DAAC's) or through Direct Broadcast (DB) stations. The MODIS instrument on the EOS Aqua mission should also be expected to be in orbit and functioning in the Spring of 2002. The Aqua spacecraft will operate in a sun-synchronous orbit going south to north in the daylight portion of the orbit crossing the equator at approximately 1330 hours local time. Subsequently the Aqua MODIS observations will substantially add to the capabilities of the Terra MODIS for environmental applications and global change studies.

Salomonson, Vincent V.↗

Marine Hydrokinetic Energy Site Identification and Ranking Methodology Part I: Wave Energy

Marine hydrokinetic energy is a promising and growing piece of the renewable energy sector that offers high predictability and additional energy sources for a diversified energy economy. This report investigates the market opportunities for wave energy along the U.S. coastlines. It is part one of a two-part investigation into the United State's two largest marine hydrokinetic resources (wave and tidal). Wave energy technology is still an emerging form of renewable energy for which large-scale, grid-connected project costs are currently poorly defined. Ideally, device designers would like to know the resource conditions at economical project sites so they can optimize device designs. On the other hand, project developers need detailed device cost data to identify sites where projects are economical. That is, device design and siting are, to some extent, a coupled problem. This work describes a methodology for identifying likely deployment locations based on a set of criteria that wave energy experts in industry, academia, and national laboratories agree are likely to be important factors for all technology types. This work groups the data for the six criteria into 'locales' that are defined as the smaller of either the local transmission grid or a state boundary. The former applies to U.S. islands (e.g., Hawaii, American Samoa) and rural villages (e.g., in Alaska); the latter applies to states in the contiguous United States. These data are then scored from 0 to 10 according to scoring functions that were developed with input from wave energy industry and academic experts. The scores are aggregated using a simple product method that includes a weighting factor for each criterion. This work presents two weighting scenarios: a long-term scenario that does not include energy price (weighted zero) and a near term scenario that includes energy price. The aggregated scores are then used to produce ranked lists of likely deployment locales. In both scenarios, Hawaii and the Pacific Northwest (northern California, Oregon, and Washington) rank at the top of the lists. Hawaii ranks highest in the near-term scenario because it has high energy costs. In the long-term scenario, Oregon ranks highest because it has a large market and an energetic resource. Several East Coast states and Puerto Rico are also identified as potential wave energy deployment sites if technological innovations make it possible to efficiently generate electricity from the modest resource there. There are also several small-market sites in Alaska and U.S. Pacific Islands that rank particularly well in the near-term analysis due to their high energy prices. These locations may represent opportunities to demonstrate economical wave energy conversion as a stepping-stone to larger markets. Several factors that will affect wave project costs and siting have not been considered here -- including permitting constraints, conflicting use, seasonal resource variability, extreme event likelihood, and distance to ports -- because consistent data are unavailable or technology-independent scoring could not be identified. As the industry continues to mature and converge around a subset of device archetypes with well-defined costs, more precise investigations of project siting that include these factors will be possible. For now, these results provide a high-level guide pointing to the regions where markets and resource will one day support commercial wave energy projects.

16 TIDAL AND WAVE POWER↗

Caching data from remote memories

An approach is disclosed that caches distant memories within the storage a local node. The approach provides a memory caching infrastructure that supports virtual addressing by utilizing memory in the local node as a cache of distant memories for data granules. The data granules are accessed along with metadata and an ECC associated with the data granule. The metadata is updated to indicate storage of the selected data granule in the cache.

Johns, Charles Ray↗