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At least 1,765 records · Page 98

The Effects of B/L-Dependent Heating on the Formation and Evolution of a Multi-Threaded Prominence

We have developed a comprehensive, multi-threaded, three-dimensional model of the plasma dynamics and energetics of a prominence and its overlying arcade (Luna et al. 2012). In this model, the basic magnetic structure is that of two interacting sheared arcades, while the cool condensations composing the prominence are formed by the well-studied thermal nonequilibrium mechanism. In a given filament-channel flux tube, the mass is evaporated from the chromosphere by heating localized near the footpoints, and condenses in the form of transient blobs or a persistent thread. Our previous studies of thermal nonequilibrium used steady or impulsive heating functions with no dependence on local physical. However, parametric active-region models with steady heating proportional to B/L, where B is the flux-tube magnetic field strength at each footpoint and L is the flux-tube length, yield the best agreement with observations (e.g., Schrijver et al. 2008). We have determined the effects of this active-region heating function on our model for the formation and evolution of prominence mass. We have also expanded the range of our computational domain to include more ofthe overlying arcade (the so-called "cavity") than in Luna et al. (2012), and have increased the number of selected flux tubes from 125 to 533. We will illustrate the time-dependent plasma behavior produced by the B/L heating function with synthetic images in several ALA passbands, and compare the resulting prominence properties with those predicted by our model with steady heating.

Karpen, Judith T.↗

Measurements of scattering and absorption properties of submillimeter bauxite and silica particles

Submillimeter solid particles have been considered as thermal storage media for concentrated solar power applications. Knowledge of the scattering and absorption properties of individual particles is crucial for modeling the radiative heat transfer of the particle bed. In this work, a laser scatterometer is used to measure the single-particle scattering properties at a wavelength of 635 nm by using two configurations: (1) a falling particle curtain and (2) a taped particle layer. Because a one-particle nominal thickness is formed with area fractions of 5-55% depending on the configuration, multiple scattering is minimized and hence the single scattering phase function, averaged over all illuminated particles, is directly measured. Bauxite-based ceramic particles that are strongly absorbing in the solar spectrum and silica particles that are nonabsorbing in the visible and near-infrared are investigated. The directional-hemispherical reflectance and transmittance of the taped particles are also measured to deduce the forward and backward scattering efficiency factors and the absorption efficiency factors. Only weak wavelength dependence is observed in the measured region from 380 nm to 1020 nm. Furthermore, the scattering phase functions of all bauxite-based particles with varying sizes and compositions are very similar and can be fitted to a Henyey-Greenstein phase function with an asymmetry factor g = -0.20. For the silica particles, forward scattering dominates and g = 0.45 yields the best fit. A Monte Carlo method is developed to model the particle scattering characteristics, and reasonable agreements between the modeling and experimental results are observed by introducing a specularity parameter.

42 ENGINEERING↗

Using baryonic charge balance functions to resolve questions about the baryo-chemistry of the quark gluon plasma

Baryon annihilations during the hadronic stage of heavy-ion collisions affects final-state baryon and antibaryon yields and final-state correlations of baryons and antibaryons. Understanding annihilation is important for addressing questions about the chemistry at the beginning of the hadronic stage and for interpreting charge-balance correlations involving baryons. Here, charge balance functions, using protons and antiprotons binned by relative momentum, rapidity, and azimuthal angle are shown to clarify the amount of annihilation in the hadronic stage. This enables a more accurate extraction of the baryo-chemistry at the beginning of the hadronic stage. Understanding annihilation is also crucial if charge balance correlations are to be used to infer the chemistry of the earliest stages of a heavy-ion collision. Furthermore, calculations are presented based on microscopic simulations of the hadronic stage coupled to a hydrodynamic description of the earlier stage, along with a detailed modeling of correlations of protons and antiprotons, known as charge-balance functions.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Towards intrinsic MoS{sub 2} devices for high performance arsenite sensing

Molybdenum disulphide (MoS{sub 2}) is one of the most attractive two dimensional materials other than graphene, and the exceptional properties make it a promising candidate for bio/chemical sensing. Nevertheless, intrinsic properties and sensing performances of MoS{sub 2} are easily masked by the presence of the Schottky barrier (SB) at source/drain electrodes, and its impact on MoS{sub 2} sensors remains unclear. Here, we systematically investigated the influence of the SB on MoS{sub 2} sensors, revealing the sensing mechanism of intrinsic MoS{sub 2}. By utilizing a small work function metal, Ti, to reduce the SB, excellent electrical properties of this 2D material were yielded with 2–3 times enhanced sensitivity. We experimentally demonstrated that the sensitivity of MoS{sub 2} is superior to that of graphene. Intrinsic MoS{sub 2} was able to realize rapid detection of arsenite down to 0.1 ppb without the influence of large SB, which is two-fold lower than the World Health Organization (WHO) tolerance level and better than the detection limit of recently reported arsenite sensors. Additionally, accurately discriminating target molecules is a great challenge for sensors based on 2D materials. This work demonstrates MoS{sub 2} sensors encapsulated with ionophore film which only allows certain types of molecules to selectively permeate through it. As a result, multiplex ion detection with superb selectivity was realized. Our results show prominent advantages of intrinsic MoS{sub 2} as a sensing material.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Collapsar R-process Yields Can Reproduce [Eu/Fe] Abundance Scatter in Metal-poor Stars

It is unclear if neutron star mergers can explain the observed r-process abundances of metal-poor stars. Collapsars, defined here as rotating massive stars whose collapse results in a rapidly accreting disk around a black hole that can launch jets, are a promising alternative. We find that we can produce a self-consistent model in which a population of collapsars with stochastic europium yields synthesizes all of the r-process material in metal-poor ([Fe/H] < - 2.5) stars. Our model reproduces the observed scatter and evolution of scatter of [Eu/Fe] abundances. We find that if collapsars are the dominant r-process site for metal-poor stars, r-process synthesis may be linked to supernovae that produce long γ-ray bursts. Our results also allow for the possibility that core-collapse supernovae beyond those that launch γ-ray bursts also produce r-process material (e.g., potentially a subset of Type Ic-BL supernovae). Furthermore, we identify collapsar jet properties (isotropic energy, engine luminosity, or engine time) that may trace r-process yield and verify that the amount of r-process yield produced per collapsar in our model ( ~ 0.07M⊙) is consistent with other independent estimates. In the future, achieving 0.05 dex precision on distribution scatter or a reliable selection function would further constrain our probe of r-process production. Our model would also hold for another prompt r-process site with a power-law yield, and work is needed to determine if, for example, fast-merging neutron stars can also explain abundance scatter.

Astronomy & Astrophysics↗

Measurements of Ionizing Radiation Doses Induced by High Irradiance Laser on Targets in LCLS MEC Instrument - Paper 75

High-power laser interaction with targets in vacuum at high laser irradiance levels can generate plasma and, consequently, create ionizing radiation hazards. The theory for ionizing radiation generation from laser-plasma interaction is complicated. The basics of theory and phenomenology are available qualitatively. However, the ionizing radiation yields associated with laser-plasma interaction have not been well quantified. Based on the theoretical analysis and review of the published reports and measurement data, SLAC National Accelerator Laboratory (SLAC) developed an analytic model to estimate conservatively the electron temperature and photon radiation yield (Sv/J) of a laser pulse hitting a solid target at 1 m as a function of laser irradiance between 10{sup 15} and 10{sup 21} W/cm{sup 2}. Ionizing radiation measurements from high-intensity laser-induced plasma interactions on solid targets inside the Al-walled vacuum chamber of the LCLS MEC instrument at SLAC were conducted using passive and active detectors at irradiance between 3x10{sup 16} and 6x10{sup 17} W/cm{sup 2}. Each run of the more than 20 runs had a unique set of laser, optic and target conditions with laser pulses rastering over the target surface mainly perpendicularly at a fixed irradiance. Significant effort was made in characterizing the laser irradiance values for each configuration of laser, focusing mirror, and target; four irradiances with targets of Au foils and copper plate were found to produce good measurement results. Electron doses inside the target chamber were highly anisotropic and peaked at backward direction by several orders of magnitude. Photon doses outside the target chamber were nearly isotropic (a factor of ∼2 higher in backward direction). When considering the large uncertainties of the irradiance (a factor of 2-3) and the potential shielding effects from detectors and target chamber, the measured photon dose rates at 1 m (150 mJ and 10 Hz) outside the target chamber (when averaged over different types of detectors) were in good agreement (a factor of ∼3) with the calculated values of the SLAC model, except at 3.0x10{sup 16} W/cm{sup 2}, which has an electron temperature of only 14 keV. At 6x10{sup 17} W/cm{sup 2}, a low level of ∼0.1 mrem/h from fast neutrons was measured (at 1 m, 150 mJ and 10 Hz) with a neutron-to-photon dose ratio of 0.2%. This is equivalent to a neutron dose yield of 2.8x10{sup -8} mSv/J (to be compared to the LULI measurements of 1x10{sup -4} mSv/J at 3x10{sup 19} W/cm{sup 2}). Both active and passive types of detectors performed well and the dose results were consistent, which is the same as the dose measurements in the Titan laser facility. Active detectors were not affected by the electromagnetic pulses associated with the MEC laser system; this was different from the Titan radiation measurements, in which all active detectors failed to respond, likely due to the high EMP in the Titan's high laser intensity fields. (authors)

43 PARTICLE ACCELERATORS↗

Functional and evolutionary relationships between bacteriorhodopsin and halorhodopsin in the archaebacterium, halobacterium halobium

The archaebacteria occupy a unique place in phylogenetic trees constructed from analyses of sequences from key informational macromolecules, and their study continues to yield interesting ideas on the early evolution and divergence of biological forms. It is now known that the halobacteria among these species contain various retinal-proteins, resembling eukaryotic rhodopsins, but with different functions. Two of these pigments, located in the cytoplasmic membranes of the bacteria, are bacteriorhodopsin (a light-driven proton pump) and halorhodopsin (a light-driven chloride pump). Comparison of these systems is expected to reveal structure/function relationships in these simple (primitive?) energy transducing membrane components and evolutionary relationships which had produced the structural features which allow the divergent functions. Findings indicate that very different primary structures are needed for these proteins to accomplish their different functions. Indeed, analysis of partial amino acid sequences from halo-opsin shows already that few if any long segments exist which are homologous to bacterio-opsin. Either these proteins diverged a very long time ago to allow for the observed differences, or the evolutionary clock in the halobacteria runs faster than usual.

Lanyi, J. K.↗

Development of a Multicenter Density Functional Tight Binding Model for Plutonium Surface Hydriding [Development of a Many-Body Density Functional Tight Binding Model for Plutonium Surface Hydriding]

We detail the creation of a multicenter density functional tight binding (DFTB) model for hydrogen on δ-plutonium, using a framework of new Slater-Koster interaction parameters and a repulsive energy based on the Chebyshev Interaction Model for Efficient Simulation (ChIMES), where two- and three-center atomic interactions are represented by linear combinations of Chebyshev polynomials. Here, we find that our DFTB/ChIMES model yields a total electron density of states for bulk δ-Pu that compares well to that from Density Functional Theory, as well as to a grid of energy calculations representing approximate H 2 dissociation paths on the δ-Pu (100) surface. We then perform molecular dynamics simulations and minimum energy pathway calculations to determine the energetics of surface dissociation and subsurface diffusion on the (100) and (111) surfaces. Our approach allows for the efficient creation of multicenter repulsive energies with a relatively small investment in initial DFT calculations. Lastly, our efforts are particularly pertinent to studies that rely on quantum calculations for interpretation and validation, such as experimental determination of chemical reactivity both on surfaces and in condensed phases.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Spatiotemporal analysis of a final-state shape resonance in interferometric photoemission from Cu(111) surfaces

Photoemission from solid targets includes the excitation and motion of electrons inside the substrate, followed by their propagation in vacuum and detection. It thus depends on the electronic band structure of the solid in the two distinct spectral domains of bound initial and continuum final states. While the imprint of the static (initial-state) valence electronic structure of solids on photoemission spectra is routinely examined in standard photoemission spectroscopy in the energy domain, state-of-the-art time-resolved photoelectron spectroscopy allows, in addition, the scrutiny of photoelectron propagation in the electronic continuum. Within a quantum-mechanical model for attosecond time-resolved interferometric photoelectron emission from solids, we calculated photoemission spectra as a function of the delay between the exciting primary attosecond pulse train and assisting infrared (IR) laser pulse. Accounting for final-state interactions of the photoelectron with the IR laser electric field and the periodic substrate, our numerical results for interferometric photoemission from the 3d-valence band of Cu(111) surfaces show a striking resonantly enhanced sideband yield at photoelectron kinetic energies near 24 eV, in conjunction with a pronounced increase of the photoelectron wave-function amplitude inside the solid on a length scale of a few nanometers. In this work, this resonant shift of final-state photoelectron-probability density towards the bulk can be interpreted as an increase in the photoelectron propagation time in the solid and is commensurate with the resonantly enhanced spectral sideband-phase shifts observed in recent two-pathway two-photon interference spectra by Kasmi et al.

74 ATOMIC AND MOLECULAR PHYSICS↗

Tunneling magnetoresistance of silicon chains

The tunneling magnetoresistance (TMR) of a silicon chain sandwiched between nickel electrodes was examined by using first-principles density functional theory. The relative orientation of the magnetization in a parallel-alignment (PA) configuration of two nickel electrodes enhanced the current with a bias less than 0.4 V compared with that in an antiparallel-alignment configuration. Consequently, the silicon chain-nickel electrodes yielded good TMR characteristics. In addition, there was polarized spin current in the PA configuration. The spin polarization of sulfur atoms functioning as a linking bridge between the chain and nickel electrode played an important role in the magnetic effects of the electric current. Moreover, the hybridization of the sulfur 3p orbital and σ-conjugated silicon 3p orbital contributed to increasing the total current.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Hybrid Density Functional Theory Comparison of Oxygen Release and Solvent Decomposition Kinetics on Li x NiO 2 Surfaces

High-nickel-content layered oxides are among the most promising electric vehicle battery cathode materials. However, their interfacial reactivity with electrolytes and tendency toward oxygen release (possibly yielding reactive 1 O 2 ) remain degradation concerns. Elucidating the most relevant (i.e., fastest) interfacial degradation mechanism will facilitate future mitigation strategies. We apply screened hybrid density functional (HSE06) calculations to compare the reaction kinetics of Li x NiO 2 surfaces with ethylene carbonate (EC) with those of O 2 release. Further, on both the (001) and (104) facets, EC oxidative decomposition exhibits lower activation energies than O 2 release. Our calculations, coupled with previously computed liquid-phase reaction rates of 1 O 2 with EC, strongly question the role of “reactive 1 O 2 ” species in electrolyte oxidative degradation. The possible role of other oxygen species is discussed. To deal with the challenges of modeling Li x NiO 2 surface reactivity, we emphasize a “local structure” approach instead of pursuing the global energy minimum.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Theoretical predictions of volatile bearing phases and volatile resources in some carbonaceous chondrites

Carbonaceous chondrites are usually believed to be the primary constituents of near-Earth asteroids and Phobos and Diemos, and are potential resources of fuels which may be exploited for future planetary missions. The nature and abundances are calculated of the major volatile bearing and other phases, including the vapor phase that should form in C1 and C2 type carbonaceous chondrites as functions of pressure and temperature. The results suggest that talc, antigorite plus or minus magnesite are the major volatile bearing phases and are stable below 400 C at 1 bar in these chondritic compositions. Simulated heating of a kilogram of C2 chondrite at fixed bulk composition between 400 and 800 C at 1 bar yields about 135 gm of volatile, which is made primarily of H2O, H2, CH4, CO2 and CO. The relative abundances of these volatile species change as functions of temperature, and on a molar basis, H2 becomes the most dominant species above 500 C. In contrast, Cl chondrites yield about 306 gm of volatile under the same condition, which consist almost completely of 60 wt percent H2O and 40 wt percent CO2. Preliminary kinetic considerations suggest that equilibrium dehydration of hydrous phyllosilicates should be attainable within a few hours at 600 C. These results provide the framework for further analyses of the volatile and economic resource potentials of carbonaceous chondrites.

Ganguly, Jibamitra↗

Diverse Bilayer Morphologies Achieved via α-Helix-to-β-Sheet Transitions in a Short Amphiphilic Peptide

Transmembrane proteins are functional macromolecules that direct the flow of small molecules and ions across a lipid bilayer. Here, we propose the development of helical peptide amphiphiles that will serve as both the bilayer and the functional unit of a self-assembled peptide bilayer membrane. The peptide, K 3 L 12 , was designed not only to possess dimensions similar to that of a lipid bilayer but also to yield a structurally robust, alpha-helical bilayer. The formation of alpha-helices is pH-dependent, and upon annealing the sample, a transition from alpha-helices to $\beta$-sheets can be controlled, as indicated by optical and vibrational spectroscopies. Imaging the materials confirms morphologies similar to that of a lipid bilayer but rich in $\alpha$-helices. Annealing the samples yields a shift in the morphology from bilayers to curled disks, fibers, and sheets. The structural robustness of the material can facilitate the incorporation of many functions into the bilayer assembly.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Online submicron particle sizing by dynamic light scattering using autodilution

Efficient production of a wide range of commercial products based on submicron colloidal dispersions would benefit from instrumentation for online particle sizing, permitting real time monitoring and control of the particle size distribution. Recent advances in the technology of dynamic light scattering (DLS), especially improvements in algorithms for inversion of the intensity autocorrelation function, have made it ideally suited to the measurement of simple particle size distributions in the difficult submicron region. Crucial to the success of an online DSL based instrument is a simple mechanism for automatically sampling and diluting the starting concentrated sample suspension, yielding a final concentration which is optimal for the light scattering measurement. A proprietary method and apparatus was developed for performing this function, designed to be used with a DLS based particle sizing instrument. A PC/AT computer is used as a smart controller for the valves in the sampler diluter, as well as an input-output communicator, video display and data storage device. Quantitative results are presented for a latex suspension and an oil-in-water emulsion.

Nicoli, David F.↗

SNPeffect: identifying functional roles of SNPs using metabolic networks

Genetic sources of phenotypic variation have been a focus of plant studies aimed at improving agricultural yield and understanding adaptive processes. Genome-wide association studies identify the genetic background behind a trait by examining associations between phenotypes and single-nucleotide polymorphisms (SNPs). Although such studies are common, biological interpretation of the results remains a challenge; especially due to the confounding nature of population structure and the systematic biases thus introduced. Here, we propose a complementary analysis (SNPeffect) that offers putative genotype-to-phenotype mechanistic interpretations by integrating biochemical knowledge encoded in metabolic models. SNPeffect is used to explain differential growth rate and metabolite accumulation in A. thaliana and P. trichocarpa accessions as the outcome of SNPs in enzyme-coding genes. To this end, we also constructed a genome-scale metabolic model for Populus trichocarpa, the first for a perennial woody tree. As expected, our results indicate that growth is a complex polygenic trait governed by carbon and energy partitioning. The predicted set of functional SNPs in both species are associated with experimentally characterized growth-determining genes and also suggest putative ones. Functional SNPs were found in pathways such as amino acid metabolism, nucleotide biosynthesis, and cellulose and lignin biosynthesis, in line with breeding strategies that target pathways governing carbon and energy partition.

54 ENVIRONMENTAL SCIENCES↗

Quantum Chemical Calculation of p K a s of Environmentally Relevant Functional Groups: Carboxylic Acids, Amines, and Thiols in Aqueous Solution

Developing accurate quantum chemical approaches for calculating p K a s is of broad interest. Useful accuracy can be obtained by using density functional theory (DFT) in combination with a polarizable continuum solvent model. However, some classes of molecules present problems for this approach, yielding errors greater than 5 p K units. Various methods have been developed to improve the accuracy of the combined strategy. These methods perform well but either do not generalize or introduce additional degrees of freedom, increasing the computational cost. The Solvation Model based on Density (SMD) has emerged as one of the most commonly used continuum solvent models. Nevertheless, for some classes of organic compounds, e.g., thiols, the p K a s calculated with the original SMD model show errors of 6–10 p K units, and we traced these errors to inaccuracies in the solvation free energies of the anions. To improve the accuracy of p K a s calculated with DFT and the SMD model, we developed a scaled solvent-accessible surface approach for constructing the solute–solvent boundary. By using a “direct” approach, in which all quantities are computed in the presence of the continuum solvent, the use of thermodynamic cycles is avoided. Furthermore, no explicit water molecules are required. Three benchmark data sets of experimentally measured p K a values, including 28 carboxylic acids, 10 aliphatic amines, and 45 thiols, were used to assess the optimized SMD model, which we call SMD with a scaled solvent-accessible surface (SMD sSAS ). Of the methods tested, the M06-2X density functional approximation, 6-31+G(d,p) basis set, and SMD sSAS solvent model provided the most accurate p K a s for each set, yielding mean unsigned errors of 0.9, 0.4, and 0.5 p K units, respectively, for carboxylic acids, aliphatic amines, and thiols. As a result, this approach is therefore useful for efficiently calculating the p K a s of environmentally relevant functional groups.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Performance of a Discrete Wavelet Transform for Compressing Plasma Count Data and its Application to the Fast Plasma Investigation on NASA's Magnetospheric Multiscale Mission

Plasma measurements in space are becoming increasingly faster, higher resolution, and distributed over multiple instruments. As raw data generation rates can exceed available data transfer bandwidth, data compression is becoming a critical design component. Data compression has been a staple of imaging instruments for years, but only recently have plasma measurement designers become interested in high performance data compression. Missions will often use a simple lossless compression technique yielding compression ratios of approximately 2:1, however future missions may require compression ratios upwards of 10:1. This study aims to explore how a Discrete Wavelet Transform combined with a Bit Plane Encoder (DWT/BPE), implemented via a CCSDS standard, can be used effectively to compress count information common to plasma measurements to high compression ratios while maintaining little or no compression error. The compression ASIC used for the Fast Plasma Investigation (FPI) on board the Magnetospheric Multiscale mission (MMS) is used for this study. Plasma count data from multiple sources is examined: resampled data from previous missions, randomly generated data from distribution functions, and simulations of expected regimes. These are run through the compression routines with various parameters to yield the greatest possible compression ratio while maintaining little or no error, the latter indicates that fully lossless compression is obtained. Finally, recommendations are made for future missions as to what can be achieved when compressing plasma count data and how best to do so.

Particles↗

Real-time coupled-cluster approach for the cumulant Green's function

Green’s function methods within many-body perturbation theory provide a general framework for treating electronic correlations in excited states. Here we investigate the cumulant form of the one-electron Green’s function based on the coupled-cluster equation of motion approach in an extension of our previous study. The approach yields a non-perturbative expression for the cumulant in terms of the solution to a set of coupled first order, non-linear differential equations. The method thereby adds non-linear corrections to traditional cumulant methods linear in the self energy. The approach is applied to the core-hole Green’s function and illustrated for a number of small molecular systems. For these systems we find that the non-linear contributions lead to significant improvements both for quasiparticle properties such as core-level binding energies, as well as the satellites corresponding to inelastic losses observed in photoemission spectra.

Vila, Fernando D.↗