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At least 1,765 records · Page 98

The Role of Advanced Information System Technology in Remote Sensing for NASA's Earth Science Enterprise in the 21st Century

Future NASA Earth observing satellites will carry high-precision instruments capable of producing large amounts of scientific data. The strategy will be to network these instrument-laden satellites into a web-like array of sensors to facilitate the collection, processing, transmission, storage, and distribution of data and data products - the essential elements of what we refer to as "Information Technology." Many of these Information Technologies will enable the satellite and ground information systems to function effectively in real-time, providing scientists with the capability of customizing data collection activities on a satellite or group of satellites directly from the ground. In future systems, extremely large quantities of data collected by scientific instruments will require the fastest processors, the highest communication channel transfer rates, and the largest data storage capacity to insure that data flows smoothly from the satellite-based instrument to the ground-based archive. Autonomous systems will control all essential processes and play a key role in coordinating the data flow through space-based communication networks. In this paper, we will discuss those critical information technologies for Earth observing satellites that will support the next generation of space-based scientific measurements of planet Earth, and insure that data and data products provided by these systems will be accessible to scientists and the user community in general.

Prescott, Glenn↗

A Reference Model for Middle Atmosphere Ozone in 1992-1993

An ozone climatology for the period April 1992 to March 1993 and covering pressures from 0.1 to 100 hPa and from 80 deg N to 80 deg S is derived from satellite-based measurements by the Stratospheric Aerosol and Gas Experiment (SAGE), the Halogen Occultation Experiment (HALOE), and the Microwave Limb Sounder (MLS). At pressures less than 1 hPa, separate distributions are given for daytime and nighttime conditions. From 0.46 to 32 hPa the accuracy of the distribution is estimated to be 5%, and the precision is also approx. 5%. Estimates of atmospheric variability are provided on the basis of standard deviations of the measurements within months. Distributions of ozone monthly means and standard deviations are also given in a potential temperature, equivalent latitude coordinate system. This data set is included in the UARS reference atmosphere, and it is accessible through that web site.

Wang, H. J.↗

Learning to predict the cosmological structure formation

Matter evolved under the influence of gravity from minuscule density fluctuations. Nonperturbative structure formed hierarchically over all scales and developed non-Gaussian features in the Universe, known as the cosmic web. To fully understand the structure formation of the Universe is one of the holy grails of modern astrophysics. Astrophysicists survey large volumes of the Universe and use a large ensemble of computer simulations to compare with the observed data to extract the full information of our own Universe. However, to evolve billions of particles over billions of years, even with the simplest physics, is a daunting task. We build a deep neural network, the Deep Density Displacement Model ( D 3 M ), which learns from a set of prerun numerical simulations, to predict the nonlinear large-scale structure of the Universe with the Zel’dovich Approximation (ZA), an analytical approximation based on perturbation theory, as the input. Our extensive analysis demonstrates that D 3 M outperforms the second-order perturbation theory (2LPT), the commonly used fast-approximate simulation method, in predicting cosmic structure in the nonlinear regime. We also show that D 3 M is able to accurately extrapolate far beyond its training data and predict structure formation for significantly different cosmological parameters. Our study proves that deep learning is a practical and accurate alternative to approximate 3D simulations of the gravitational structure formation of the Universe.

79 ASTRONOMY AND ASTROPHYSICS↗

Application of a Dataset-Publication Knowledge Graph for Improving Earth Science Data Search

Finding a dataset at a NASA data center that is the best fit for the researcher’s application presents a challenge, not only for a novice user but for an experienced one, due to the data complexity and a multitude of choices of the existing data. Users often search for the data based on the application they are interested in, their research domain, phenomena, research topic, etc. As existing dataset metadata may not cover these search terms, the user may not obtain the most relevant results for their purpose. This problem was addressed by leveraging the content of the titles and abstracts of the research papers that utilize NASA datasets. For this, features from the paper titles and abstracts were extracted, and then a knowledge graph (KG) was used to link these features to the datasets used in that paper. The search for the datasets was tested by querying this knowledge graph through various terms extracted from Earth Science ontologies such as Semantic Web for Earth and Environment Technology (SWEET), and it was shown that this KG search outperforms the existing search that exclusively queries the dataset metadata.

Kristina Stoyanova↗

Graph-Based Approaches for Predicting Solvation Energy in Multiple Solvents: Open Datasets and Machine Learning Models

The solvation properties of molecules, often estimated using quantum chemical simulations, are important in the synthesis of energy storage materials, drugs, and industrial chemicals. Here, we develop machine learning models of solvation energies to replace expensive quantum chemistry calculations with inexpensive-to-compute message-passing neural network models that require only the molecular graph as inputs. Our models are trained on a new database of solvation energies for 130,258 molecules taken from the QM9 dataset computed in five solvents (acetone, ethanol, acetonitrile, dimethyl sulfoxide, and water) via an implicit solvent model. Our best model achieves a mean absolute error of 0.5 kcal/mol for molecules with nine or fewer non-hydrogen atoms and 1 kcal/mol for molecules with between 10 and 14 non-hydrogen atoms. We make the entire dataset of 651,290 computed entries openly available and provide simple web and programmatic interfaces to enable others to run our solvation energy model on new molecules. This model calculates the solvation energies for molecules using only the SMILES string and also provides an estimate of whether each molecule is within the domain of applicability of our model. We envision that the dataset and models will provide the functionality needed for the rapid screening of large chemical spaces to discover improved molecules for many applications.

25 ENERGY STORAGE↗

Research Progress of Mercury Bioaccumulation in the Aquatic Food Chain, China: A Review

Research on mercury (Hg) in aquatic ecosystems in China has focused mainly on fish, with little research on the base of the food chain and Hg bioaccumulation mechanisms. This paper summarizes research progress pertaining to the characteristics, current status, and trends of Hg accumulation in the aquatic food chain in China, analyzes the effects of human activities on the transmission and accumulation of Hg in aquatic food chains, and assesses their risks to human and ecosystem health. A comparison of fish samples in China between 2000 and 2018 indicates that their total Hg content remains at relatively safe levels. However, because current information is generally insufficient to confirm how anthropogenic activities affect transformation and bioaccumulation in the aqueous environment, Hg isotope studies should be a focus of research on aquatic food webs. Additionally, more attention should be paid to Hg transport and bioaccumulation in the basic food chain by focusing on multi-contaminant joint exposure studies and establishing Hg bio-transport models.

54 ENVIRONMENTAL SCIENCES↗

Mercury methylation by metabolically versatile and cosmopolitan marine bacteria

Microbes transform aqueous mercury (Hg) into methylmercury (MeHg), a potent neurotoxin that accumulates in terrestrial and marine food webs, with potential impacts on human health. This process requires the gene pair hgcAB, which encodes for proteins that actuate Hg methylation, and has been well described for anoxic environments. However, recent studies report potential MeHg formation in suboxic seawater, although the microorganisms involved remain poorly understood. In this study, we conducted large-scale multi-omic analyses to search for putative microbial Hg methylators along defined redox gradients in Saanich Inlet, British Columbia, a model natural ecosystem with previously measured Hg and MeHg concentration profiles. Analysis of gene expression profiles along the redoxcline identified several putative Hg methylating microbial groups, including Calditrichaeota, SAR324 and Marinimicrobia, with the last the most active based on hgc transcription levels. Marinimicrobia hgc genes were identified from multiple publicly available marine metagenomes, consistent with a potential key role in marine Hg methylation. Computational homology modelling predicts that Marinimicrobia HgcAB proteins contain the highly conserved amino acid sites and folding structures required for functional Hg methylation. Furthermore, a number of terminal oxidases from aerobic respiratory chains were associated with several putative novel Hg methylators. Our findings thus reveal potential novel marine Hg-methylating microorganisms with a greater oxygen tolerance and broader habitat range than previously recognized.

59 BASIC BIOLOGICAL SCIENCES↗

Sunphotometric Measurement of Columnar H2O and Aerosol Optical Depth During the 3rd Water Vapor IOP in Fall 2000 at the SGP ARM Site

We conducted ground-based measurements with the Ames Airborne Tracking 6-channel Sunphotometer (AATS-6) during the 3rd Water Vapor IOP (WVIOP3), September 18 - October 8, 2000 at the SGP ARM site. For this deployment our primary result was columnar water vapor (CWV) obtained from continuous solar transmittance measurements in the 0.94-micron band. In addition, we simultaneously measured aerosol optical depth (AOD) at 380, 450, 525, 864 and 1020 nm. During the IOP, preliminary results of CWV and AOD were displayed in real-time. The result files were made available to other investigators by noon of the next day. During WVIOP3 those data were shown on the daily intercomparison plots on the IOP web-site. Our preliminary results for CWV fell within the spread of values obtained from other techniques. After conclusion of WVIOP3, AATS-6 was shipped directly to Mauna Loa, Hawaii for post-mission calibration. The updated calibration, a cloud screening technique for AOD, along with other mostly cosmetic changes were applied to the WVIOP3 data set and released as version 0.1. The resulting changes in CWV are small, the changes in AOD and Angstrom parameter are more noticeable. Data version 0.1 was successfully submitted to the ARM External Data Center. In the poster we will show data examples for both CWV and AOD. We will also compare our CWV results with those obtained from a GPS (Global Positioning System) slant path method.

Schmid, B↗

Precipitation links (PrecipLinks) - a prototype directory for precipitation information

This poster describes a web directory of research oriented precipitation links. In this era of sophisticated search engines and web agents, it might seem counterproductive to establish such a directory of links. However, entering precipitation into a search engine like google will yield over one million hits. To further exacerbate this situation many of the returned links are dead, duplicates of other links, incomplete, or only marginally related to research precipitation or even the broader precipitation area. Sometimes connecting the linked URL causes the browser to lose context and not be able to get back to the original page. Even using more sophisticated search engines query parameters or agents while reducing the overall return doesn't eliminate all of the other issues listed. As part of the development of the measurement-based Precipitation Processing System (PPS) that will support Tropical Rainfall Measuring Mission (TRMM) version 7 reprocessing and the Global Precipitation Measurement (GPM) mission a precipitation links (PrecipLinks) facility is being developed. PrecipLinks is intended to share locations of other sites that contain information or data pertaining to precipitation research. Potential contributors can log-on to the PrecipLinks website and register their site for inclusion in the directory. The price for inclusion is the requirement to place a link back to PrecipLinks on the webpage that is registered. This ensures that users will be able to easily get back to PrecipLinks regardless of any context issues that browsers might have. Perhaps more importantly users while visiting one site that they know can be referred to a location that has many others sites with which they might not be familiar. PrecipLinks is designed to have a very flat structure. This poster summarizes these categories (information, data, services) and the reasons for their selection. Providers may register multiple pages to which they wish to direct users. However, each page may be attached to only one of these categories. Each page to which they refer users will also have a return link to PrecipLinks. The poster describes the operation of the system both the automated and the human processes. It also provides images for the various steps in the registration and use.

Velanthapillia, Balendran↗

Assurance of Electronic Parts for Aerospace System Reliability: Past, Present, and Future

Over the last two to three decades, the balance of influence within the electronics industry has shifted decisively towards the consumer electronics and information technology products, away from the defense or aerospace markets. This shift towards the commercial markets has changed certain ground rules in the electronics industry. Reliance of the aerospace industry, in particular, on components from supply chains dedicated to other products, or cross-vertical product integration, creates a supply web and introduces significant risks that are not necessarily present for volume-driven electronic products. Many of the unique risks in the aerospace industry emanate from the key characteristics of this industry. Although selection and usage of commercial electronics in NASA flight hardware is possible at a comparable (and in many cases lower) level of risk to that of employing parts that are screened to military or NASA specifications, for a large majority of flight projects it is difficult to distinguish the difference in on-orbit performance or reliability for parts screened at any level, or commercial parts that have no additional screening performed by the government. This paper identifies several bases for establishing context and developing unique or alternative approaches for successful parts selection and application within NASA and across the commercial space community.

electronic parts↗

ExMC Digital Engineering

Future missions beyond Artemis II will become increasingly complex as multiple vehicles (e.g., Gateway, Human Landing System (HLS), and Extravehicular Activity and Human Surface Mobility Program (EHP)), each having their own Program requirements and other associated documentation, which will need to be integrated into a single mission. Currently, the Human Health and Performance Directorate (HHPD)Program Support Teams mostly use documents to manage, perform, and archive their analyses. Identifying an opportunity for efficiency, ExMC demonstrated the ability to utilize MagicDraw, a Model-Based Systems Engineering (MBSE) tool, as a requirements database with traceability, dependencies, and relationships in one place. Rather than existing in documents, emails, and historical knowledge, ExMC pursued a Digital Engineering (DE) effort in coordination with HHPD by combining MBSE tools with other digital platforms to manage and develop user-defined databases and interfaces. This DE approach is aimed to simplify processes and reduce risk through the unification of requirements into a centralized digital network, improving collaboration, decision-making, and transparency compared to isolated documents and knowledge. However, manipulating data views and content in MagicDraw requires a steep learning curve not needed by all users and even the user-friendly web view comes with downsides due to the static views. To provide a more dynamic user interface, ExMC investigated the use of Microsoft Power Platform which does not require as steep of a learning curve to become proficient. This introduces analytics to the DE infrastructure, offering customizable and dynamic data dashboards. ExMC continues developing these dashboards and tailoring the DE infrastructure in alignment with HHPD workforce needs.

M Krihak↗

Striped Data Analysis Framework

Traditionally, High Energy data analysis is based on the model where data are stored in files and analyzed by running multiple analysis processes, each reading one or more of the data files. This process involves repeated data reduction step, which produces smaller files, which is time consuming and leads to data duplication. We propose an alternative approach to data storage and analysis, based on the Big Data technologies. The idea is to store each element of data once and only once in a distributed scalable database and analyze data by reading only "interesting" pieces of data from the database. To make this approach possible, we developed columnar Striped Data Representation Format as the basis of the framework. Traditional columnar approach allows for efficient analysis of complex data structures. While keeping all the benefits of columnar data representation, striped mechanism goes further by enabling efficient parallelization of computations and flexible dist ribution of data analysis. The framework includes scalable and elastic data storage, compute and user analysis backend components. The framework uses off-the shelf web services and data caching technologies as the compute/data co-location mechanism. Flexible architecture allows the framework run in the cloud using container technologies. The framework offers Python/Jupyter as the user analysis backend platform, but can also run in command line or batch mode. In the article, we will present the results of the FNAL-LDRD-2016-032 FNAL LDRD project, the design, implementation, features and performance characteristics of the Striped Data Analysis Framework.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

The future of bibliographic standards in a networked information environment

The main mission of the CENDI Cataloging Working Group is to provide guidelines for cataloging practices that support the sharing of database records among the CENDI agencies, and that incorporate principles based on cost effectiveness and efficiency. Recent efforts include the extension of COSATI Guidelines for the Cataloging of Technical Reports to include non-print materials, and the mapping of each agency's export file structure to USMARC. Of primary importance is the impact of electronic documents and the distributed nature of the networked information environment. Topics discussed during the workshop include the following: Trade-offs in Cataloging and Indexing Internet Information; The Impact on Current and Future Standards; A Look at WWW Metadata Initiatives; Standards for Electronic Journals; The Present and Future Search Engines; The Roles for Text Analysis Software; Advanced Search Engine Meets Metathesaurus; Locator Schemes for Internet Resources; Identifying and Cataloging Web Document Types; In Search of a New Bibliographic Record. The videos in this set include viewgraphs of charts and related materials of the workshop.

Source record↗

Aggregation Tool to Create Curated Data albums to Support Disaster Recovery and Response

Despite advances in science and technology of prediction and simulation of natural hazards, losses incurred due to natural disasters keep growing every year. Natural disasters cause more economic losses as compared to anthropogenic disasters. Economic losses due to natural hazards are estimated to be around $6-$10 billion dollars annually for the U.S. and this number keeps increasing every year. This increase has been attributed to population growth and migration to more hazard prone locations such as coasts. As this trend continues, in concert with shifts in weather patterns caused by climate change, it is anticipated that losses associated with natural disasters will keep growing substantially. One of challenges disaster response and recovery analysts face is to quickly find, access and utilize a vast variety of relevant geospatial data collected by different federal agencies such as DoD, NASA, NOAA, EPA, USGS etc. Some examples of these data sets include high spatio-temporal resolution multi/hyperspectral satellite imagery, model prediction outputs from weather models, latest radar scans, measurements from an array of sensor networks such as Integrated Ocean Observing System etc. More often analysts may be familiar with limited, but specific datasets and are often unaware of or unfamiliar with a large quantity of other useful resources. Finding airborne or satellite data useful to a natural disaster event often requires a time consuming search through web pages and data archives. Additional information related to damages, deaths, and injuries requires extensive online searches for news reports and official report summaries. An analyst must also sift through vast amounts of potentially useful digital information captured by the general public such as geo-tagged photos, videos and real time damage updates within twitter feeds. Collecting and aggregating these information fragments can provide useful information in assessing damage in real time and help direct recovery efforts. The search process for the analyst could be made much more efficient and productive if a tool could go beyond a typical search engine and provide not just links to web sites but actual links to specific data relevant to the natural disaster, parse unstructured reports for useful information nuggets, as well as gather other related reports, summaries, news stories, and images. This presentation will describe a semantic aggregation tool developed to address similar problem for Earth Science researchers. This tool provides automated curation, and creates "Data Albums" to support case studies. The generated "Data Albums" are compiled collections of information related to a specific science topic or event, containing links to relevant data files (granules) from different instruments; tools and services for visualization and analysis; information about the event contained in news reports, and images or videos to supplement research analysis. An ontology-based relevancy-ranking algorithm drives the curation of relevant data sets for a given event. This tool is now being used to generate a catalog of Hurricane Case Studies at Global Hydrology Resource Center (GHRC), one of NASA's Distribute Active Archive Centers. Another instance of the Data Albums tool is currently being created in collaboration with NASA/MSFC's SPoRT Center, which conducts research on unique NASA products and capabilities that can be transitioned to the operational community to solve forecast problems. This new instance focuses on severe weather to support SPoRT researchers in their model evaluation studies

Ramachandran, Rahul↗

Allometric Trophic Networks From Individuals to Socio-Ecosystems: Consumer–Resource Theory of the Ecological Elephant in the Room

A well-known parable is that of the blind men studying an elephant each of which assert the elephant is the part they first hold in their hands, e.g., “rope!” says the tail holder while the leg holder asserts “tree!” The various subdisciplines of ecology appear similar in that we each engage in our enthusiastic but at least somewhat myopic study with remarkably limited agreement or even discussion about the overall system which we all study. Allometric trophic network (ATN) theory offers a path out of this dilemma by integrating across scales, taxa, habitats and organizational levels from physiology to ecosystems based on consumer-resource interactions among co-existing organisms. The network architecture and the metabolic and behavioral processes that determine the structure and dynamics of these interactions form the first principles of ATN theory, which in turn provides a synthetic overview and powerfully predictive framework for ecology from organisms to ecosystems. Beyond ecology, ATN theory also synthesizes eco-evolutionary and socio-ecological research still largely based on consumer-resource mechanisms but respectively integrated with different processes including natural selection and market mechanisms. This paper briefly describes foundations, advances, and future directions of ATN theory including predicting an ecosystem’s phenotype from its community’s genotype in order to accelerate more predictive and unified understanding of the complex systems studied by ecologists and other environmental scientists.

54 ENVIRONMENTAL SCIENCES↗

Discovery of unconventional and nonintuitive self-assembling peptide materials using experiment-driven machine learning

Prediction of peptide secondary structure is challenging because of complex molecular interactions, sequence-specific behavior, and environmental factors. Traditional design strategies, based on hydrophobicity and structural propensity, can be biased and could indeed prevent discovery of interesting, diverse, and unconventional peptides with desired nanostructure assembly. Using β sheet formation in pentapeptides as a case study, we used an integrated high-throughput experimental workflow and an artificial intelligence–driven active learning framework to improve prediction accuracy of self-assembly. By focusing on sequences where machine learning (ML) predictions deviate from conventional design strategies, we synthesized and tested 268 pentapeptides, successfully finding 96 forming β sheet assemblies, including unconventional sequences (e.g., ILFSM, LMISI, MITIY, MISIW, and WKIYI) not predicted by traditional methods. Our ML models outperformed conventional β sheet propensity tables, revealing useful chemical design rules. A web interface is provided to facilitate community access to these models. This work highlights the value of ML-driven approaches in overcoming the limitations of current peptide design strategies.

Talluri, Y. Nissi [Indian Inst. of Technology (IIT↗

ECP Milestone Memo WBS 2.3.4.13 ECP/VTK-m FY19Q1 [MS-19/01-03] ZFP / Release / Clip STDA05-17

The STDA05-17 milestone comprises the following 3 deliverables. VTK-m Release 2 We will provide a release of VTK-m software and associated documentation. The source code repository will be tagged at a stable state, and, at a minimum, tarball captures of the source code will be made available from the web site. A version of the VTK-m User's Guide documenting this release will also be made available. Productionize zfp compression The "ZFP: Compressed Floating-Point Arrays" project (WBS 1.3.4.13) is creating an implementation of ZFP compression in VTK-m. Their implementation will be focused on operating in CUDA. The VTK-m project will assist by generalizing the implementation to other devices (such as multi-core CPUs). We will also assist in productionizing the code such that it can be used by external projects and products. Clip Clip operations intersect meshes with implicit functions. It is the foundation of spatial subsetting algorithms, such as "box," and the foundation of data-based subsetting, such as "isovolume." The algorithm requires considering thousands of possible cases, and is thus quite difficult to implement. This milestone will implement clipping to be sufficient for Visit's and ParaView's needs.

97 MATHEMATICS AND COMPUTING↗

Capsule_Grid User Guide

Software utility CAPSULE_GRID and several related procedures that automate grid generation for computational fluid dynamics calculations about axisymmetric atmospheric entry vehicles are described as a supplement to the documentation within the source codes. This application program and its ancillary software utilities are all in the public domain at the web site https://software.nasa.gov/software/category/all/arc/1/cfdtools with the exception of the 2D hyperbolic volume gridding step for which scripts driving either GRIDGEN1 or HYPGEN2 are available. CAPSULE_GRID was developed at NASA Ames Research Center in support of the DPLR3 real gas flow solver. Both forebodies (only) and full bodies are treated, for axisymmetric 2D flow calculations or for 3D calculations at angle of attack. The expected application is to the smooth outer mold line of a hypersonic atmospheric entry vehicle, for which a single layer of point-matched structured grid blocks normally suffices. Control files for a variety of representative cases are included with illustrations of results, and some insights into the subtleties of curvature-based grid point distribution are provided. Gridding of a capsule on a sting is supported. Additional procedures for treating arbitrarily long 2D wakes, prompted by asteroid studies and relevant to spacecraft such as Stardust, are also documented. Most recently, treating an asymmetric forebody (including an off-center nose, with or without an aft body) has been incorporated as an extra step.

spacecraft↗