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At least 1,765 records · Page 98

Molecular Simulation of MoS 2 Exfoliation

A wide variety of two-dimensional layered materials are synthesized by liquid-phase exfoliation. Here we examine exfoliation of MoS 2 into nanosheets in a mixture of water and isopropanol (IPA) containing cavitation bubbles. Using force fields optimized with experimental data on interfacial energies between MoS 2 and the solvent, multimillion-atom molecular dynamics simulations are performed in conjunction with experiments to examine shock-induced collapse of cavitation bubbles and the resulting exfoliation of MoS 2 . The collapse of cavitation bubbles generates high-speed nanojets and shock waves in the solvent. Large shear stresses due to the nanojet impact on MoS 2 surfaces initiate exfoliation, and shock waves reflected from MoS 2 surfaces enhance exfoliation. Structural correlations in the solvent indicate that shock induces an ice VII like motif in the first solvation shell of water.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Application of ESMACS binding free energy protocols to diverse datasets: Bromodomain-containing protein 4

As the application of computational methods in drug discovery pipelines becomes more widespread it is increasingly important to understand how reproducible their results are and how sensitive they are to choices made in simulation setup and analysis. Here we use ensemble simulation protocols, termed ESMACS (enhanced sampling of molecular dynamics with approximation of continuum solvent), to investigate the sensitivity of the popular molecular mechanics Poisson-Boltzmann surface area (MMPBSA) methodology. Using the bromodomain-containing protein 4 (BRD4) system bound to a diverse set of ligands as our target, we show that robust rankings can be produced only through combining ensemble sampling with multiple trajectories and enhanced solvation via an explicit ligand hydration shell.

59 BASIC BIOLOGICAL SCIENCES↗

Dark air–liquid interfacial chemistry of glyoxal and hydrogen peroxide

The air-liquid (a-l) interfacial chemistry of glyoxal is of great interest in atmospheric chemistry. We present molecular imaging of glyoxal and hydrogen peroxide (H 2 O 2 ) dark aging using in situ time-of-flight secondary ion mass spectrometry (ToF-SIMS). More organic peroxides and cluster ions are observed at the a-l interface in dark aging compared to UV aging. Cluster ions formed with more water molecules in dark aging indicate that aqueous secondary organic aerosols (aqSOA) could form hydrogen bond with water molecules, suggesting that aqSOA at the aqueous phase are more hydrophilic. Thus the interfacial aqSOA in dark aging could increase hygroscopic growth. Strong contribution of cluster ions and large water clusters in dark aging indicates change of solvation shells at the a-l interface. The observation of organic peroxides and cluster ions indicates that the aqueous surface could be a reservoir of organic peroxides and odd hydrogen radicals at night. Our findings provide new understandings of glyoxal a-l interfacial chemistry and fill in the gap between field measurements and the climate model simulation of SOA.

54 ENVIRONMENTAL SCIENCES↗

All-temperature zinc batteries with high-entropy aqueous electrolyte

Electrification of transportation and rising demand for grid energy storage continue to build momentum around batteries across the globe. However, the supply chain of Li-ion batteries is exposed to the increasing challenges of resourcing essential and scarce materials. Therefore, incentives to develop more sustainable battery chemistries are growing. Here, in this paper, we show an aqueous ZnCl 2 electrolyte with introduced LiCl as supporting salt. Once the electrolyte is optimized to Li 2 ZnCl 4 ∙9H 2 O, the assembled Zn–air battery can sustain stable cycling over the course of 800 hours at a current density of 0.4 mA cm -2 between -60 °C and +80 °C, with 100% Coulombic efficiency for Zn stripping/plating. Even at -60 °C, >80% of room-temperature power density can be retained. Advanced characterization and theoretical calculations reveal a high-entropy solvation structure that is responsible for the excellent performance. The strong acidity allows ZnCl 2 to accept donated Cl - ions to form ZnCl 4 2- anions, while water molecules remain within the free solvent network at low salt concentration or coordinate with Li ions. Our work suggests an effective strategy for the rational design of electrolytes that could enable next-generation Zn batteries.

25 ENERGY STORAGE↗

Zn 2+ -mediated catalysis for fast-charging aqueous Zn-ion batteries

Rechargeable aqueous zinc-ion batteries (AZIBs), renowned for their safety, high energy density and rapid charging, are prime choices for grid-scale energy storage. Historically, ion-shuttling models centring on ion-migration behaviour have dominated explanations for charge/discharge processes in aqueous batteries, like classical ion insertion/extraction and pseudocapacitance mechanisms. However, these models struggle to account for the exceptional performance of AZIBs compared to other aqueous metal-ion batteries. Here, in this study, we present a catalysis model elucidating the Zn 2+ anomaly in aqueous batteries, explaining it through the concept of adsorption in catalysis. Such behaviour can serve the charge/discharge role, predominantly dictated by solvated metal cations and cathode materials. First-principles calculations suggest optimal adsorption/desorption behaviour (water dissociation process) with the Zn 2+ -vanadium nitride (VN) combination. Experimentally, AZIBs implementing VN cathodes demonstrate fast-charging kinetics, showing a capacity of 577.1 mAh g -1 at a current density of 300,000 mA g -1 . The grasp of catalysis steps within AZIBs can drive solutions beyond state-of-the-art fast-charging batteries.

25 ENERGY STORAGE↗

Excited state dynamics of azanaphthalenes reveal opportunities for the rational design of photoactive molecules

Abstract Various photoactive molecules contain motifs built on aza-aromatic heterocycles, although a detailed understanding of the excited state photophysics and photochemistry in such systems is not fully developed. To help address this issue, the non-adiabatic dynamics operating in azanaphthalenes under hexane solvation was studied following 267 nm excitation using ultrafast transient absorption spectroscopy. Specifically, the species quinoline, isoquinoline, quinazoline, quinoxaline, 1,6-naphthyridine, and 1,8-naphthyridine were investigated, providing a systematic variation in the relative positioning of nitrogen heteroatom centres within a bicyclic aromatic structure. Our results indicate considerable differences in excited state lifetimes, and in the propensity for intersystem crossingvsinternal conversion across the molecular series. The overall pattern of behaviour can be explained in terms of potential energy barriers and spin-orbit coupling effects, as demonstrated by extensive quantum chemistry calculations undertaken at the SCS-ADC(2) level of theory. The fact that quantum chemistry calculations can achieve such detailed and nuanced agreement with experimental data across a full set of six molecules exhibiting subtle variations in their composition provides an excellent example of the current state-of-the-art and is indicative of future opportunities for rational design of photoactive molecules.

Chemistry↗

Structure, dynamics and stability of water/scCO 2 /mineral interfaces from ab initio molecular dynamics simulations

Here, the interface between a solid and a complex multi-component liquid forms a unique reaction environment whose structure and composition can significantly deviate from either bulk or liquid phase and is poorly understood due the innate difficulty to obtain molecular level information. Feldspar minerals, as typified by the Ca-end member Anorthite, serve as prototypical model systems to assess the reactivity and ion mobility at solid/water-bearing supercritical fluid (WBSF) interfaces due to recent X-ray based measurements that provide information on water-film formation, and cation vacancies at these surfaces. Using density functional theory based molecular dynamics, which allows the evaluation of reactivity and condensed phase dynamics on equal footing, we report on the structure and dynamics of water nucleation and surface aggregation, carbonation and Ca mobilization under geologic carbon sequestration scenarios (T = 323 K and P = 90 bar). We find that water has a strong enthalpic preference for aggregation on a Ca-rich, O-terminated anorthite (001) surface, but entropy strongly hinders the film formation at very low water concentrations. Carbonation reactions readily occur at electron-rich terminal Oxygen sites adjacent to cation vacancies, when in contact with supercritical CO 2 . Cation vacancies of this type can form readily in the presence of a water layer that allows for facile and enthalpicly favorable Ca 2+ extraction and solvation. Apart from providing unprecedented molecular level detail of a complex three component (mineral, water and scCO 2 ) system), this work highlights the ability of modern capabilities of AIMD methods to begin to qualitatively and quantitatively address structure and reactivity at solid-liquid interfaces of high chemical complexity. This work was supported by the US Department of Energy, Office of Fossil Energy (M.-S. L., B. P. M. and V.-A. G.) and the Office of Basic Energy Science, Division of Chemical Sciences, Geosciences and Biosciences (R.R.), and performed at the Pacific Northwest National Laboratory (PNNL). PNNL is a multi-program national laboratory operated for DOE by Battelle. Computational resources were provided by PNNL’s Platform for Institutional Computing (PIC), the W. R. Wiley Environmental Molecular Science Laboratory (EMSL), a national scientific user facility sponsored by the Department of Energy’s Office of Biological and Environmental Research located at PNNL and the National Energy Research Scientific Computing Center (NERSC) at Lawrence Berkeley National Laboratory.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Molecular mechanisms of ionic liquid cytotoxicity probed by an integrated experimental and computational approach

Ionic liquids (ILs) are salts that remain liquid down to low temperatures, and sometimes well below room temperature. ILs have been called “green solvents” because of their extraordinarily low vapor pressure and excellent solvation power, but ecotoxicology studies have shown that some ILs exhibit greater toxicity than traditional solvents. A fundamental understanding of the molecular mechanisms responsible for IL toxicity remains elusive. Here we show that one mode of IL toxicity on unicellular organisms is driven by swelling of the cell membrane. Cytotoxicity assays, confocal laser scanning microscopy, and molecular simulations reveal that IL cations nucleate morphological defects in the microbial cell membrane at concentrations near the half maximal effective concentration (EC50) of several microorganisms. Lastly, cytotoxicity increases with increasing alkyl chain length of the cation due to the ability of the longer alkyl chain to more easily embed in, and ultimately disrupt, the cell membrane.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

New nickel(II) and iron(II) helicates and tetrahedra derived from expanded quaterpyridines

As an extension of prior studies involving the linear quaterpyridine ligand, 5,5(triple prime)-dimethyl-2,2':5',5{double_prime}:2{double_prime},2(triple prime)-quaterpyridine 1, the synthesis of the related expanded quaterpyridine derivatives 2 and 3 incorporating dimethoxy-substituted 1,4-phenylene and tetramethoxy-substituted 4,4'-biphenylene bridges between pairs of 2,2'-bipyridyl groups has been carried out via double-Suzuki coupling reactions between 5-bromo-5'-methyl-2'-bipyridine and the appropriate di-pinacol-diboronic esters using microwave heating. Reaction of 2 and 3 with selected Fe(II) or Ni(II) salts yields a mixture of both [M{sub 2}L{sub 3}]{sup 4+} triple helicates and [M{sub 4}L{sub 6}]{sup 8+} tetrahedra, in particular cases the ratio of the products formed was shown to be dependent on the reaction conditions; the respective products are all sufficiently inert to allow their chromatographic separation and isolation. Longer reaction times and higher concentrations were found to favour tetrahedron formation. The X-ray structures of solvated [Ni{sub 2}(2){sub 3}](PF{sub 6}){sub 4}, [(PF{sub 6}) {contained_in} Fe{sub 4}(2){sub 6}](PF{sub 6}){sub 7}, [Fe{sub 4}(3){sub 6}](PF{sub 6}){sub 8} and [Ni{sub 4}(3){sub 6}](PF{sub 6}){sub 8} have been determined, while the structure of the parent Fe(II) cage in the series, [(PF{sub 6}) {contained_in} Fe{sub 4}(1){sub 6}](PF{sub 6}){sub 7}, was reported previously. The internal volumes of the Fe(II) tetrahedral cages have been calculated and increase from 102 {angstrom}{sup 3} for [Fe{sub 4}(1){sub 6}]{sup 8+} to 227 {angstrom}{sup 3} for [Fe{sub 4}(2){sub 6}]{sup 8+} to 417 {angstrom}{sup 3} for [Fe{sub 4}(3){sub 6}]{sup 8+} and to an impressive 839 {angstrom}{sup 3} for [Ni{sub 4}(3){sub 6}]{sup 8+}. The corresponding void volume in the triple helicate [Ni{sub 2}(2){sub 3}]{sup 4+} is 29 {angstrom}{sup 3}.

36 MATERIALS SCIENCE↗

Temperature-dependent structure of ionic liquids: X-ray scattering and simulations

In this article we determine the temperature-dependent structure of the tetradecyltrihexylphosphonium bis(trifluoromethylsulfonyl)amide ionic liquid using a combination of X-ray scattering and molecular dynamics simulations. As in many other room-temperature ionic liquids three characteristic intermolecular peaks can be detected in the structure function S(q). A prepeak or first sharp diffraction peak is observed at about q = 0.42 {angstrom}{sup -1}. Long range anion-anion correlations are the most important contributors to this peak. In all systems we have studied to date, this prepeak is a signature of solvation asymmetry. The peak in S(q) near q = 0.75 {angstrom}{sup -1} is the signature of ionic alternation and arises from the charge ordered separation of ions of the same charge. The most intense diffraction peak near q = 1.37 {angstrom}{sup -1} arises from short-range separation between ions of opposite charge combined with a significant contribution from cationic carbon-carbon interactions, indicating that cationic hydrophobic tails have significant contacts.

Kashyap, Hemant K.↗

Glucose and Fructose to Platform Chemicals: Understanding the Thermodynamic Landscapes of Acid-Catalysed Reactions Using High-Level ab Initio Methods

Molecular level understanding of acid-catalysed conversion of sugar molecules to platform chemicals such as hydroxy-methyl furfural (HMF), furfuryl alcohol (FAL), and levulinic acid (LA) is essential for efficient biomass conversion. In this paper, the high-level G4MP2 method along with the SMD solvation model is employed to understand detailed reaction energetics of the acid-catalysed decomposition of glucose and fructose to HMF. Based on protonation free energies of various hydroxyl groups of the sugar molecule, the relative reactivity of gluco-pyranose, fructo-pyranose and fructo-furanose are predicted. Calculations suggest that, in addition to the protonated intermediates, a solvent assisted dehydration of one of the fructo-furanosyl intermediates is a competing mechanism, indicating the possibility of multiple reaction pathways for fructose to HMF conversion in aqueous acidic medium. Two reaction pathways were explored to understand the thermodynamics of glucose to HMF; the first one is initiated by the protonation of a C2–OH group and the second one through an enolate intermediate involving acyclic intermediates. Additionally, a pathway is proposed for the formation of furfuryl alcohol from glucose initiated by the protonation of a C2–OH position, which includes a C–C bond cleavage, and the formation of formic acid. The detailed free energy landscapes predicted in this study can be used as benchmarks for further exploring the sugar decomposition reactions, prediction of possible intermediates, and finally designing improved catalysts for biomass conversion chemistry in the future.

Environmental Molecular Sciences Laboratory↗

UV patternable thin film chemistry for shape and functionally versatile self-oscillating gels

We describe a new planar processing chemistry that allows the synthesis and patterning of dynamically self-actuating gels of diverse form. The chemical reaction covalently incorporates a methacrylate-modified ruthenium trisbipyridine monomer within a poly acrylamide (PAAm) gel, modified to provide a flexible chemistry for UV-curable, self-oscillating Belousov–Zhabotinsky (BZ) gels. The photoinitiated polymerization offers significant advantages over previously reported BZ gel chemistries – fast polymerization rates, broad flexibility in the structural and functional attributes that impact the BZ reaction driven mechanics, and a facility for net shape fabrication via projection mode photo lithographic exposure. The facility of the synthetic method enabled an opportunity to broadly explore the structure/property and structure/rate correlations characterizing the dynamics of these gels and develop means to both control and predict the detailed features of the self-oscillating chemical waves they embed. The PAAm systems initiate under the control of transport-dominated influences weighted heavily by the diffusion/depletion of reagents present in the ambient contacting fluid medium. These initiating modes of oscillation are generally unstable temporally, showing shape- and property-sensitive conversions to oscillating modes controlled by the attributes of the gel-phase environment. The present work establishes the nature of these sensitivities, developing insights related to such features in patterned gel objects or films as composition, size, thickness, shape, degree of crosslinking, and gradient forms of structure within the gel. We observed in this work that, across a broad design-rule and compositional space, the PAAm based BZ gel systems exhibit contractions in dimension for regions in which the Ru catalyst is present in the +3 oxidation state (PNIPAAm BZ gels expand in this state). The chemomechanics of the PAAm system are further differentiated from those of PNIPAAm in the generally (and relatively) fast oscillatory rates it can sustain. Furthermore, this work suggests the dynamics in the PAAm gels do not reflect a simple osmotic force driven by differences in the solvation of Ru(II/III) centers. Computational modeling supports a mechanism in which the charge state of Ru centers mediate a differential degree of intra/inter-chain segmental interactions – dynamics that mediate a temporally varying degree of reversibly formed association crosslinks within the gel.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Elucidating the mechanism behind the stabilization of multi-charged metal cations in water: A case study of the electronic states of microhydrated Mg2+, Ca2+ and Al3+”

Metal atoms typically have second and higher ionization potentials (IPs) that are larger than the IP of water, resulting in the Coulombic explosion of the first few [M(H2O)n]+q (q ≥ 2) clusters as the M+ + (H2O)n + or MOH+ + H3O+(H2O)n energy levels are energetically more stable than the M2+ + (H2O)n ones for small n. We present a theoretical analysis of the various electronic states correlating with the above channels that are involved in the sequential hydration of the Ca2+, Mg2+ and Al3+ cations with up to six water molecules that, for the first time, quantifies their relative shift with the degree of solvation accounting for the observed stabilization of those multi-charged metal cations in an aqueous solution. *

Miliordos, Evangelos↗

Mechanistic Investigation of Solvent Extraction Based on Anion-Functionalized Ionic Liquids for Selective Separation of Rare-Earth Ions

In this study, solvation has been found to be a dominant mechanism in a comprehensive ionic liquid based extraction system for rare earth elements (REEs). Trioctylmethylammonium di(2-ethylhexyl)phosphate ([TOMA][DEHP]), an ionic-liquid extractant, was used in 1-alkyl-3-methylimidizolium bis[(trifluoromethyl)sulfonyl]imide ([Cnmim][NTf2], n = 4, 6, 8, 10) and 1-alkyl-3-methylimidizolium bis(perfluoroethanesulfonyl)imide ([Cnmim][BETI], n = 4, 6, 8, 10) for the separation of REEs. Surprisingly, a very similar extraction behavior was observed even as the carbon chain length on the ionic-liquid (IL) cation increased from butyl (C4) to hexyl (C6), to octyl (C8), to decyl (C10). This behavior is in sharp contrast to that exhibited by the conventional neutral extractants, whose extraction efficiencies are strongly dependent on the hydrophobicity of IL cations. Furthermore, the addition of IL cations ([Cnmim]+) or IL anions ([NTf2]- or [BETI]-) to the aqueous phase had little effect on the extraction behavior of the above extraction system, ruling out the strong involvement of the ion-exchange mechanism associated with traditional IL-based extraction systems. Results showed that the extractabilities and selectivities of REEs using [TOMA][DEHP] in [C10mim][NTf2]/[BETI] are several orders of magnitude better than those achieved using conventional organic solvent, diisopropylbenzene (DIPB). This study highlights the potential of developing a comprehensive IL-based extraction strategy for REEs separations.

Sun, Xiaoqi↗

X-ray absorption spectroscopy of LiBF 4 in propylene carbonate. A model lithium ion battery electrolyte

Since their introduction into the commercial marketplace in 1991, lithium ion batteries have become increasingly ubiquitous in portable technology. Nevertheless, improvements to existing battery technology are necessary to expand their utility for larger-scale applications, such as electric vehicles. Advances may be realized from improvements to the liquid electrolyte; however, current understanding of the liquid structure and properties remains incomplete. X-ray absorption spectroscopy of solutions of LiBF 4 in propylene carbonate (PC), interpreted using first-principles electronic structure calculations within the eXcited electron and Core Hole (XCH) approximation, yields new insight into the solvation structure of the Li + ion in this model electrolyte. By generating linear combinations of the computed spectra of Li + -associating and free PC molecules and comparing to the experimental spectrum, we find a Li + –solvent interaction number of 4.5. This result suggests that computational models of lithium ion battery electrolytes should move beyond tetrahedral coordination structures.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Infrared detection of (H 2 O) 20 isomers of exceptional stability: A drop-like and a face-sharing pentagonal prism cluster

Water clusters containing fully coordinated water molecules are model systems that mimic the local environment of the condensed phase. Present knowledge about the water cluster size regime in which the transition from the allsurface to the fully solvated water molecules occurs is mainly based on theoretical predictions in lieu of the absence of precisely size resolved experimental measurements. Here, we report size and isomer selective infrared (IR) spectra of (H 2 O) 20 clusters tagged with a sodium atom by employing IR excitation modulated photoionization spectroscopy. The observed absorption patterns in the OH stretching ”fingerprint” region are consistent with the theoretically predicted spectra of two structurally distinct isomers: A drop-like cluster with a fully coordinated (interior) water and an edge-sharing pentagonal prism cluster in which all atoms are on the surface. The observed isomers show exceptional stability and are predicted to be nearly isoenergetic.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

A class of polysulfide catholytes for lithium-sulfur batteries: energy density, cyclability, and voltage enhancement

Liquid-phase polysulfide catholytes are attracting much attention in lithium-sulfur (Li-S) batteries as they provide a facile dispersion and homogeneous distribution of the sulfur active material in the conductive matrix. However, the organic solvents used in lithium-polysulfide (Li-PS) batteries play an important role and have an impact on the physico-chemical characteristics of polysulfides. For instance, significantly higher voltages (similar to 2.7 V) of the S/S-n(2-) (4 <= n <= 8) redox couple are observed in Li-PS batteries with dimethyl sulfoxide (DMSO) and N-methyl-2-pyrrolidone (NMP) solvents. Accordingly, high power Li-PS batteries are presented here with the catholyte prepared with NMP solvent and operated with the highly reversible sulfur/long-chain polysulfide redox couple. On the other hand, a remarkable cyclability enhancement of the Li-PS battery is observed with the long-chain, ether-based tetraglyme (TEGDME) solvent. The voltage enhancement and the cyclability enhancement of the Li-PS batteries are attributed to the solvation effect, viscosity, and volatility of the solvents. Finally, highly concentrated polysulfide catholytes are successfully synthesized, with which high energy density Li-PS batteries are demonstrated by employing a multi-walled carbon nanotube (MWCNT) fabric electrode.

Yu, XW↗

Theoretical Prediction of Am(III)/Eu(III) Selectivity to Aid the Design of Actinide-Lanthanide Separation Agents

Selective extraction of minor actinides from lanthanides is a critical step in the reduction of radiotoxicity of spent nuclear fuels. However, the design of suitable ligands for separating chemically similar 4f- and 5f-block trivalent metal ions poses a significant challenge. Furthermore, first-principles calculations should play an important role in the design of new separation agents, but their ability to predict metal ion selectivity has not been systematically evaluated. We examine the ability of several density functional theory methods to predict selectivity of Am(III) and Eu(III) with oxygen, mixed oxygen–nitrogen, and sulfur donor ligands. The results establish a computational method capable of predicting the correct order of selectivities obtained from liquid–liquid extraction and aqueous phase complexation studies. To allow reasonably accurate predictions, it was critical to employ sufficiently flexible basis sets and provide proper account of solvation effects. The approach is utilized to estimate the selectivity of novel amide-functionalized diazine and 1,2,3-triazole ligands.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗