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At least 1,765 records · Page 98

Investigating key cell types and molecules dynamics in PyMT mice model of breast cancer through a mathematical model

The most common kind of cancer among women is breast cancer. Understanding the tumor microenvironment and the interactions between individual cells and cytokines assists us in arriving at more effective treatments. Here, we develop a data-driven mathematical model to investigate the dynamics of key cell types and cytokines involved in breast cancer development. We use time-course gene expression profiles of a mouse model to estimate the relative abundance of cells and cytokines. We then employ a least-squares optimization method to evaluate the model’s parameters based on the mice data. The resulting dynamics of the cells and cytokines obtained from the optimal set of parameters exhibit a decent agreement between the data and predictions. We perform a sensitivity analysis to identify the crucial parameters of the model and then perform a local bifurcation on them. The results reveal a strong connection between adipocytes, IL6, and the cancer population, suggesting them as potential targets for therapies.

59 BASIC BIOLOGICAL SCIENCES↗

Crystal Viscoplasticity Model of Molybdenum Including the Influence of Silicon in Solid Solution [Crystal Viscoplasticity Model of Mo Including the Influence of Si in Solid Solution]

Molybdenum (Mo)-based alloys offer higher temperature capability than nickel-based superalloys. The challenge of designing these alloys is tailoring the chemistry and microstructure to achieve high-temperature strength, creep and fatigue resistance, and oxidation resistance while maintaining lower-temperature ductility and damage tolerance. Structure-properties modeling tools can be used to identify optimum microstructures. However, one missing element in this tool set is a constitutive model for the more ductile α-Mo phase over the entire temperature range from room temperature to 1,400°C. A crystal viscoplasticity model is developed for α-Mo, including the influence of varying amounts of silicon (Si) in solid solution. As a result, the temperature, strain rate, and Si dependence of the deformation behavior needed to determine the model parameters are obtained from new compression experiments.

36 MATERIALS SCIENCE↗

Reference Inflow Characterization for River Resource Reference Model: Reference Model 2 (RM2)

Sandia National Laboratory (SNL) is leading an effort to develop reference models for marine and hydrokinetic technologies and wave and current energy resources. This effort will allow the refinement of technology design tools, accurate estimates of a baseline levelized cost of energy (LCoE), and the identification of the main cost drivers that need to be addressed to achieve a competitive LCoE. As part of this effort, Oak Ridge National Laboratory was charged with examining and reporting reference river inflow characteristics for reference model 2 (RM2). Published turbulent flow data from large rivers, a water supply canal and laboratory flumes, are reviewed to determine the range of velocities, turbulence intensities and turbulent stresses acting on hydrokinetic technologies, and also to evaluate the validity of classical models that describe the depth variation of the time-mean velocity and turbulent normal Reynolds stresses. The classical models are found to generally perform well in describing river inflow characteristics. A potential challenge in river inflow characterization, however, is the high variability of depth and flow over the design life of a hydrokinetic device. This variation can have significant effects on the inflow mean velocity and turbulence intensity experienced by stationary and bottom mounted hydrokinetic energy conversion devices, which requires further investigation, but are expected to have minimal effects on surface mounted devices like the vertical axis turbine device designed for RM2. A simple methodology for obtaining an approximate inflow characterization for surface deployed devices is developed using the relation u max =(7/6)V where V is the bulk velocity and u max is assumed to be the near-surface velocity. The application of this expression is recommended for deriving the local inflow velocity acting on the energy extraction planes of the RM2 vertical axis rotors, where V=Q/A can be calculated given a USGS gage flow time-series and stage vs. cross-section area rating relationship.

17 WIND ENERGY↗

NEAMS FPL M2 Milestone Report: Development of a UO₂ Grain Size Model using Multicale Modeling and Simulation

This report summarizes development work funded by the Nuclear Energy Advanced Modeling Simulation program's Fuels Product Line (FPL) to develop a mechanistic model for the average grain size in UO₂ fuel. The model is developed using a multiscale modeling and simulation approach involving atomistic simulations, as well as mesoscale simulations using INL's MARMOT code.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

A Statistical Approach For Modeling Tropical Cyclones. Synthetic Hurricanes Generator Model

This manuscript brie y describes a statistical ap- proach to generate synthetic tropical cyclone tracks to be used in risk evaluations. The Synthetic Hur- ricane Generator (SynHurG) model allows model- ing hurricane risk in the United States supporting decision makers and implementations of adaptation strategies to extreme weather. In the literature there are mainly two approaches to model hurricane hazard for risk prediction: deterministic-statistical approaches, where the storm key physical parameters are calculated using physi- cal complex climate models and the tracks are usually determined statistically from historical data; and sta- tistical approaches, where both variables and tracks are estimated stochastically using historical records. SynHurG falls in the second category adopting a pure stochastic approach.

97 MATHEMATICS AND COMPUTING↗

Sensitivity of Near-Surface Variables in the RUC Land Surface Model in the Weather Research and Forecasting Model

In this study, we investigate the parametric sensitivity of near-surface variables, such as sensible heat flux, latent heat flux, ground heat flux, hub-height wind speed and land surface temperature, to the parameters used in the Rapid Update Cycle (RUC) land surface model (LSM) during a wintertime and summertime period. The model simulations are compared with observations collected from the second Wind Forecast Improvement Project (WFIP2) field campaign. The results suggest that parameters related to snow/ice and thermal processes can have significant impact on the simulated near-surface variables. Out of the 11 examined parameters, only 6 of them have considerable influences on the model behaviors and explain about 60 ~ 80 % of the estimated total variance of the simulated variables. In addition, the magnitude of the parametric sensitivity varies with season. For instance, parameters associated with snow/ice processes are dominant during the wintertime whereas those associated with thermal processes are more important during the summertime. Furthermore, the impact of the identified parameters on the simulated variables is highly related to the topography. There is a high degree of sensitivity to the parameter values over the slope region. This points out the importance of collecting field observations over steep areas to better quantity the appropriate values of key parameters. Overall, our findings provide a better understanding of the RUC LSM behavior associated with parameter uncertainties and can be used to improve the forecasting skill of land surface processes via calibration of the most uncertain model parameters.

17 WIND ENERGY↗

MODELING THE Ly α FOREST IN COLLISIONLESS SIMULATIONS

Cosmological hydrodynamic simulations can accurately predict the properties of the intergalactic medium (IGM), but only under the condition of retaining the high spatial resolution necessary to resolve density fluctuations in the IGM. This resolution constraint prohibits simulating large volumes, such as those probed by BOSS and future surveys, like DESI and 4MOST. To overcome this limitation, we present “Iteratively Matched Statistics” (IMS), a novel method to accurately model the Ly α forest with collisionless N -body simulations, where the relevant density fluctuations are unresolved. We use a small-box, high-resolution hydrodynamic simulation to obtain the probability distribution function (PDF) and the power spectrum of the real-space Ly α forest flux. These two statistics are iteratively mapped onto a pseudo-flux field of an N -body simulation, which we construct from the matter density. We demonstrate that our method can reproduce the PDF, line of sight and 3D power spectra of the Ly α forest with good accuracy (7%, 4%, and 7% respectively). We quantify the performance of the commonly used Gaussian smoothing technique and show that it has significantly lower accuracy (20%–80%), especially for N -body simulations with achievable mean inter-particle separations in large-volume simulations. In addition, we show that IMS produces reasonable and smooth spectra, making it a powerful tool for modeling the IGM in large cosmological volumes and for producing realistic “mock” skies for Ly α forest surveys.

79 ASTRONOMY AND ASTROPHYSICS↗

Toward a Minimal Representation of Aerosols in Climate Models: Description and Evaluation in the Community Atmosphere Model CAM5

A modal aerosol module (MAM) has been developed for the Community Atmosphere Model version 5 (CAM5), the atmospheric component of the Community Earth System Model version 1 (CESM1). MAM is capable of simulating the aerosol size distribution and both internal and external mixing between aerosol components, treating numerous complicated aerosol processes and aerosol physical, chemical and optical properties in a physically based manner. Two MAM versions were developed: a more complete version with seven-lognormal modes (MAM7), and a three-lognormal mode version (MAM3) for the purpose of long-term (decades to centuries) simulations. Major approximations in MAM3 include assuming immediate mixing of primary organic matter (POM) and black carbon (BC) with other aerosol components, merging of the MAM7 fine dust and fine sea salt modes into the accumulation mode, merging of the MAM7 coarse dust and coarse sea salt modes into the single coarse mode, and neglecting the explicit treatment of ammonia and ammonium cycles. Simulated sulfate and secondary organic aerosol (SOA) mass concentrations are remarkably similar between MAM3 and MAM7 as most ({approx}90%) of these aerosol species are in the accumulation mode. Differences of POM and BC concentrations between MAM3 and MAM7 are also small (mostly within 10%) because of the assumed hygroscopic nature of POM, so that freshly emitted POM and BC are wet-removed before mixing internally with soluble aerosol species. Sensitivity tests with the POM assumed to be hydrophobic and with slower aging process increase the POM and BC concentrations, especially at high latitudes (by several times). The mineral dust global burden differs by 10% and sea salt burden by 30-40% between MAM3 and MAM7 mainly due to the different size ranges for dust and sea salt modes and different standard deviations of log-normal size distribution for sea salt modes between MAM3 and MAM7. The model is able to qualitatively capture the observed geographical and temporal variations of aerosol mass and number concentrations, size distributions, and aerosol optical properties. However, there are noticeable biases, e.g., simulated sulfate and mineral dust concentrations at surface over the oceans are too low. Simulated BC concentrations are significant low in the Arctic. There is a low bias in modeled aerosol optical depth on the global scale, especially in the developing counties. There biases in aerosol simulations clearly indicate the need for improvements of aerosol processes (e.g., emission fluxes of anthropogenic aerosols and precursor gases in developing countries, boundary layer nucleation) and properties (e.g., primary aerosol emission size, POM hygroscopicity). In addition the critical role of cloud properties (e.g., liquid water content, cloud fraction) responsible for the wet scavenging of aerosol is highlighted.

54 ENVIRONMENTAL SCIENCES↗

An Efficient Model-based Diagnosis Engine for Hybrid Systems Using Structural Model Decomposition

Complex hybrid systems are present in a large range of engineering applications, like mechanical systems, electrical circuits, or embedded computation systems. The behavior of these systems is made up of continuous and discrete event dynamics that increase the difficulties for accurate and timely online fault diagnosis. The Hybrid Diagnosis Engine (HyDE) offers flexibility to the diagnosis application designer to choose the modeling paradigm and the reasoning algorithms. The HyDE architecture supports the use of multiple modeling paradigms at the component and system level. However, HyDE faces some problems regarding performance in terms of complexity and time. Our focus in this paper is on developing efficient model-based methodologies for online fault diagnosis in complex hybrid systems. To do this, we propose a diagnosis framework where structural model decomposition is integrated within the HyDE diagnosis framework to reduce the computational complexity associated with the fault diagnosis of hybrid systems. As a case study, we apply our approach to a diagnostic testbed, the Advanced Diagnostics and Prognostics Testbed (ADAPT), using real data.

Structural Decomposition↗

Using an Explainable Machine Learning Approach to Characterize Earth System Model Errors: Application of SHAP Analysis to Modeling Lightning Flash Occurrence

Computational models of the Earth System are critical tools for modern scientific inquiry. Effortstoward evaluating and improving errors in representations of physical and chemical processes inthese large computational systems are commonly stymied by highly nonlinear and complexerror behavior. Recent work has shown that these errors can be effectively predicted usingmodern Artificial Intelligence (A.I.) techniques. In this work, we go beyond these previousstudies to apply an interpretable A.I. technique to not only predict model errors but also movetoward understanding the underlying reasons for successful error prediction. We use XGBoostclassification trees and SHapley Additive exPlanations (SHAP) analysis to explore the errors inthe prediction of lightning occurrence in the NASA GEOS model, a widely used Earth SystemModel. This explainable error prediction system can effectively predict the model error andindicates that the errors are strongly related to convective processes and the characteristics ofthe land surface.

Artificial intelligence↗

Scenario Setup and Forcing Data for Impact Model Evaluation and Impact Attribution Within the Third Round of the Inter-Sectoral Model Intercomparison Project (ISIMIP3a)

This paper describes the rationale and the protocol of the first component of the third simulation round of the Inter-Sectoral Impact Model Intercomparison Project (ISIMIP3a, http://www.isimip.org, last access: 2 November 2023) and the associated set of climate-related and direct human forcing data (CRF and DHF, respectively). The observation-based climate-related forcings for the first time include high-resolution observational climate forcings derived by orographic downscaling, monthly to hourly coastal water levels, and wind fields associated with historical tropical cyclones. The DHFs include land use patterns, population densities, information about water and agricultural management, and fishing intensities. The ISIMIP3a impact model simulations driven by these observation-based climate-related and direct human forcings are designed to test to what degree the impact models can explain observed changes in natural and human systems. In a second set of ISIMIP3a experiments the participating impact models are forced by the same DHFs but a counterfactual set of atmospheric forcings and coastal water levels where observed trends have been removed. These experiments are designed to allow for the attribution of observed changes in natural, human, and managed systems to climate change, rising CH 4 and CO 2 concentrations, and sea level rise according to the definition of the Working Group II contribution to the IPCC AR6.

Inter Sectoral Impact Model Intercomparison Projec↗

Microscale Constitutive Model Sensitivity on Multiscale Modeling of Fiber Reinforced Composites

Fiber reinforced composites are desirable in applications where low weight and high strength are needed, but are susceptible to microscale variability during manufacturing, making failure predictions difficult. The impact microscale variability has on macroscale mechanical response is difficult to predict due to the computational efficiency needed to simulate many, large, high fidelity, microscale models. In this study, a multiscale approach was taken to model 3-point bend, 4-point bend, and tensile experiments of a unidirectional composite from only having microstructure scans of these samples and constituent properties from literature. These scans were sampled with different sized windows, and statistically equivalent microstructures were generated, then simulated for stiffness, strength, and fracture toughness using an efficient micromechanical. Mesoscale models were created where element sizes equaled microstructure size, and properties were assigned through sampling of microscale simulation results. First, this study showed the effect of using Weibull scaling on constituent matrix strength on macroscale response. Then, a comparison was made between different element sizes and experiments. Finally, model dimensions were fixed, and the effect of randomly distributed local properties alone was examined. Results showed that the scatter of strength and stiffness in the experiments could be predicted well using images of the microscale fiber morphologies and that using stochastic properties produced a 3% coefficient of variation of strength for all experiments.

statistical microstructure↗

Low Activation Joining of SiC/SiC Composites for Fusion Applications: Modeling Miniature Torsion Tests with Elastic and Elastic-Plastic Models

The international fusion community designed miniature torsion specimens for joint testing and irradiation in test reactors with limited irradiation volumes since SiC and SiC-composites used in fission or fusion environments require joining methods for assembling systems. Torsion specimens fail out-of-plane when joints are strong and when elastic moduli are comparable to SiC, which causes difficulties in determining shear strengths for many joints or for comparing unirradiated and irradiated joints. A finite element damage model was developed to treat elastic joints such as SiC/Ti3SiC2+SiC and elastic-plastic joints such as SiC/epoxy and steel/epoxy. The model uses constitutive shear data and is validated using epoxy joint data. The elastic model indicates fracture is likely to occur within the joined pieces to cause out-of-plane failures for miniature torsion specimens when a certain modulus and strength ratio between the joint material and the joined material exists. Lower modulus epoxy joints always fail in plane and provide good model validation.

Damage Mechanics↗

Golden Eagle Behavioral Modeling Enabled by High-Fidelity Atmospheric Models

The DOE-funded Golden Eagle Behavioral Modeling project combines knowledge of eagle behavior, eagle telemetry data, high-fidelity atmospheric and wind power plant flow models, and machine learning to develop tools that predict behavior and risk around wind power plants. This presentation provides background on the project and modeling approaches, as well as recent modeling and validation results from the region around the Top of the World wind plant in Wyoming.

49 EE - Wind and Water Power Program - Wind (EE-4W↗

Recent Improvements in PV+Battery Modeling in NREL's System Advisor Model

This poster covers recent updates to the NREL System Advisor Model's battery model that can be coupled to the PV model to add value to both front of meter and behind the meter systems. Topics include new dispatch algorithms focusing on smoothing the output of a PV plant to meet ramp rate requirements and responding to price signals to maximize system revenue, validated battery lifetime models, grid outage simulations and resiliency metrics, and the new levelized cost of storage (LCOS) metric. We will also share preliminary results from NREL analysis projects using these features.

battery↗

Evaluation of a Reduced-Order Model for IBR Fault Response Representation via OEM Blackbox Models: Preprint

Driven by the need to capture the electromagnetic transients of transmission lines, inverter switching behavior, and detailed control systems, electromagnetic transient (EMT) studies have become increasingly important in industry, such as IBR interconnection study and fault study. However, original equipment manufacturer (OEM) inverter models typically include extensive parameters and proprietary settings that are unavailable to protection engineers. This paper introduces a data-driven, reduced-order model (ROM) developed as a PSCAD library component for use in EMT-based fault studies. The ROM replicates key OEM model behaviors without requiring detailed knowledge of control design or parameterization. The accompanying Python automation scripts streamline data generation, parameter fitting, and validation. The ROM's performance is demonstrated through comparison with both IEEE 2800-compliant and non-compliant OEM models in a real-world power system. Relay responses show nearly identical results, while simulation runtime is reduced by an average of 32.8\%, highlighting the ROM's practicality for protection engineers.

14 SOLAR ENERGY↗