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At least 1,747 records · Page 97
All sourcesNASA NTRSDOE OSTI
DOE OSTI2023

Solvent-Producing Clostridia Revisited

The review provides an overview of the current status of the solvent-producing clostridia. The origin and development of industrial clostridial species, as well as the history of the industrial Acetone Butanol Ethanol fermentation process, is reexamined, and the recent resurgence of interest in the production of biobutanol is reviewed. Over 300 fully sequenced genomes for solvent-producing and closely related clostridial species are currently available in public databases. These include 270 genomes sourced from the David Jones culture collection. These genomes were allocated arbitrary DJ codes, and a conversion table to identify the species and strains has now been provided. The expanded genomic database facilitated new comparative genomic and phylogenetic analysis. A synopsis of the common features, molecular taxonomy, and phylogeny of solvent-producing clostridia and the application of comparative phylogenomics are evaluated. A survey and analysis of resident prophages in solvent-producing clostridia are discussed, and the discovery, occurrence, and role of novel R-type tailocins are reported. Prophage genomes with R-type tailocin-like features were detected in all 12 species investigated. The widespread occurrence of tailocins in Gram-negative species is well documented; this survey has indicated that they may also be widespread in clostridia.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2019

MAESTROeX: A Massively Parallel Low Mach Number Astrophysical Solver

@e present MAESTROeX, a massively parallel solver for low Mach number astrophysical flows. The underlying low Mach number equation set allows for efficient, long-time integration for highly subsonic flows compared to compressible approaches. MAESTROeX is suitable for modeling full spherical stars as well as well as planar simulations of dynamics within localized regions of a star, and can robustly handle several orders of magnitude of density and pressure stratification. Previously, we have described the development of the predecessor of MAESTROeX, called MAESTRO, in a series of papers. Here, we present a new, greatly simplified temporal integration scheme that retains the same order of accuracy as our previous approaches. We also explore the use of alternative spatial mapping of the one-dimensional base state onto the full Cartesian grid. The code leverages the new AMReX software framework for block-structured adaptive mesh refinement (AMR) applications, allowing for scalability to large fractions of leadership-class machines. Finally, using our previous studies on the convective phase of single-degenerate progenitor models of SNe Ia as a guide, we characterize the performance of the code and validate the new algorithmic features. Like MAESTRO, MAESTROeX is fully open source.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2023

Massively parallel modeling and inversion of electrical resistivity tomography data using PFLOTRAN

Abstract. Electrical resistivity tomography (ERT) is a broadly accepted geophysical method for subsurface investigations. Interpretation of field ERT data usually requires the application of computationally intensive forward modeling and inversion algorithms. For large-scale ERT data, the efficiency of these algorithms depends on the robustness, accuracy, and scalability on high-performance computing resources. In this regard, we present a robust and highly scalable implementation of forward modeling and inversion algorithms for ERT data. The implementation is publicly available and developed within the framework of PFLOTRAN, an open-source, state-of-the-art massively parallel subsurface flow and transport simulation code. The forward modeling is based on a finite-volume discretization of the governing differential equations, and the inversion uses a Gauss–Newton optimization scheme. To evaluate the accuracy of the forward modeling, two examples are first presented by considering layered (1D) and 3D earth conductivity models. The computed numerical results show good agreement with the analytical solutions for the layered earth model and results from a well-established code for the 3D model. Inversion of ERT data, simulated for a 3D model, is then performed to demonstrate the inversion capability by recovering the conductivity of the model. To demonstrate the parallel performance of PFLOTRAN's ERT process model and inversion capabilities, large-scale scalability tests are performed by using up to 131 072 processes on a leadership class supercomputer. These tests are performed for the two most computationally intensive steps of the ERT inversion: forward modeling and Jacobian computation. For the forward modeling, we consider models with up to 122 ×106 degrees of freedom (DOFs) in the resulting system of linear equations and demonstrate that the code exhibits almost linear scalability on up to 10 000 DOFs per process. On the other hand, the code shows superlinear scalability for the Jacobian computation, mainly because all computations are fairly evenly distributed over each process with no parallel communication.

58 GEOSCIENCES↗
DOE OSTI2017

Scanning ARM Precipitation Radar (SAPR) Velocity Azimuth Display (VAD)

The Velocity Azimuth Display (VAD, historical term) product contains retrievals of the zonal (north/south) and meridional (east/west) wind speed components, in precipitating systems, as a function of time and height. This product, which uses azimuthal variations in radial air velocity, allows quick insight into wind speed and wind direction in the vicinity of the radar when rainfall or snowfall is present. VAD data are derived from Corrected Moments in Antenna Coordinates Version 2 (CMAC2) using code within the Python ARM Radar Toolkit (Py-ART), an open-source architecture for interacting with radar data in the Python programming language.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2017

Scanning ARM Precipitation Radar (SAPR) Quasi-Vertical Profile (QVP)

The Quasi-Vertical Profiles (QVP) VAP averages quality-controlled radar measurements along the axis of the azimuth. QVP allows quick insight into domain mean hydrometeor (e.g., snow, rain, melting layer) location and polarimetric data. QVP data are derived from Corrected Moments in Antenna Coordinates Version 2 (CMAC2) using code within the Python ARM Radar Toolkit (Py-ART), an open-source architecture for interacting with radar data in the Python programming language.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2025

The Verification and Validation of a Magnetic Plasma Fluid Model Utilizing the MOOSE (Multiphysics Object Oriented Simulation Environment) Framework

As the goal of achieving fusion power on the grid comes closer to fruition, fully coupled multiphysics models of fusion devices will be crucial. Currently, there are two main approaches to developing these platforms: (1) loosely coupled, where one couples existing codes and solvers together through input and output parameters and data, and (2) tightly coupled, where one develops the necessary models within a singular, integrated framework. This work focuses on the latter approach for magnetically confined fusion devices by developing a fluid-based plasma-edge model within the Multiphysics Object Oriented Simulation Environment (MOOSE) Framework. This effort is coordinated with other efforts to develop, test, demonstrate, and deploy fusion relevant multiphysics capabilities including electromagnetics, particle-in-cell plasma, tritium transport, and fusion blanket design. This new model is an expansion of the MOOSE-based plasma application, Zapdos, which was originally formulated to model low-temperature, non-magnetized plasma processes. Verification, benchmarking, and validation studies have been conducted. Verification studies involved utilizing the method of manufactured solutions and comparing the convergence slope of a known solution to the theoretical slope. Benchmarking consists of comparisons to existing edge codes, namely BOUT++ and SOLEDGE3X. Validation efforts focused on comparisons against open-source data from the TCV tokamak.

70 - PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2025

Idaho National Laboratory CY 2024 National Emission Standards for Hazardous Air Pollutants Analysis, Methodology, and Results for Radionuclides

This report documents the methodology and results for calculating the effective dose equivalent (EDE) to the maximally exposed individual (MEI) from atmospheric radionuclide emissions from Idaho National Laboratory (INL) sources in Calendar Year (CY) 2024. The calculations were performed in accordance with requirements in Code of Federal Regulations (CFR), Title 40, “Protection of the Environment,” Part 61, “National Emission Standards for Hazardous Air Pollutants (NESHAPs),” Subpart H, “National Emission Standards for Emissions of Radionuclides Other than Radon from Department of Energy Facilities” (40 CFR 61, Subpart H). UDFs were calculated using the computer model CAP88-PC for unit (1 Ci/yr) emission rates at INL Site facilities and INL in-town (Idaho Falls) facilities and stored in Microsoft Access databases. The UDFs—in this case, mrem/Ci—were then combined with radionuclide-specific release (emission) rates for each facility-specific source to compute doses at predetermined public receptor locations, including the MEI locations. This report contains the dose results and a description of the methodology and tools used to compute the doses.

07 - ISOTOPES AND RADIATION SOURCES↗
DOE OSTI2019

VEXS, An Open Platform for the Study of Continuous-Energy Cross-Section Lookup Algorithms on GPU’s

A significant bottleneck in continuous-energy neutron transport simulations is the cross-section lookup problem, especially in the case of those occurring in depleted fuel regions. Several algorithms have been developed over the years to solve this problem on more traditional CPU-based platforms, however new computational architectures such as GPUs may not benefit as significantly from these algorithms. As there is increasing interest in using these new computational architectures as a core part of large simulations, the relative efficacy of these algorithms compared to one another is an interesting area of research. Additionally, implementations of these algorithms are sometimes inaccessible to interested scientists outside of the nuclear engineering field given the export-controlled nature of the codes they are implemented in. In this paper, we describe our work to extend an existing open-source platform for cross-section lookup simulation, XSBench, to GPUs. We also describe our adaptation of the original codebase to handle more realistic datasets, and our efforts to accommodate different in-memory data layouts in order to more closely approximate those implementations used in production codes. Finally, we compare our results with those obtained from Shift, a GPU-enabled Monte Carlo transport solver developed for large neutron transport simulations.

Shriver, Forrest↗
DOE OSTI2021

The Nature of Jets in Double-peaked Emission-line AGN in the KISSR Sample

Double-peaked emission-line AGN (DPAGN) have been regarded as binary black hole candidates. We present here results from parsec-scale radio observations with the Very Long Baseline Array (VLBA) of five DPAGN belonging to the KISSR sample of emission-line galaxies. This work concludes our pilot study of nine type 2 Seyfert and LINER DPAGN from the KISSR sample. In the nine sources, dual compact cores are only detected in the “offset AGN,” KISSR 102. However, the overall incidence of jets in the eight sources that were detected with the VLBA is ≥ 60%. We find a difference in the “missing flux density” going from the Very Large Array to VLBA scales between Seyferts and LINERs, with LINERs showing less missing flux density on parsec-scales. Using the emission-line modeling code, MAPPINGS III, we find that the emission lines are likely to be influenced by jets in 5/9 sources. Furthermore, jet-medium interaction is the likely cause of the emission-line splitting observed in the SDSS spectra of these sources. Jets in radio-quiet AGN are therefore energetically capable of influencing their parsec- and kpcscale environments, which makes them agents of “radio AGN feedback” (similar to radio-loud AGN).

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2016

Background gas density and beam losses in NIO1 beam source

NIO1 (Negative Ion Optimization 1) is a versatile ion source designed to study the physics of production and acceleration of H- beams up to 60 keV. In ion sources, the gas is steadily injected in the plasma source to sustain the discharge, while high vacuum is maintained by a dedicated pumping system located in the vessel. In this paper, the three dimensional gas flow in NIO1 is studied in the molecular flow regime by the Avocado code. The analysis of the gas density profile along the accelerator considers the influence of effective gas temperature in the source, of the gas temperature accommodation by collisions at walls, and of the gas particle mass. The calculated source and vessel pressures are compared with experimental measurements in NIO1 during steady gas injection.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
DOE OSTI2013

Laser-plasma source parameters for Kr, Gd, and Tb ions at 6.6 nm

There is increasing interest in extreme-ultraviolet (EUV) laser-based lamps for sub-10-nm lithography operating in the region of 6.6 nm. A collisional-radiative model is developed as a post-processor of a hydrodynamic code to investigate emission from resonance lines in Kr, Gd, and Tb ions under conditions typical for mass-limited EUV sources. The analysis reveals that maximum conversion efficiencies of Kr occur at 5 Multiplication-Sign 10{sup 10}W/cm{sup 2}, while for Gd and Tb it was Asymptotically-Equal-To 0.9%/2{pi}sr for laser intensities of (2-5) Multiplication-Sign 10{sup 12}W/cm{sup 2}.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2014

A review of the use and potential of the GATE Monte Carlo simulation code for radiation therapy and dosimetry applications

In this paper, the authors' review the applicability of the open-source GATE Monte Carlo simulation platform based on the GEANT4 toolkit for radiation therapy and dosimetry applications. The many applications of GATE for state-of-the-art radiotherapy simulations are described including external beam radiotherapy, brachytherapy, intraoperative radiotherapy, hadrontherapy, molecular radiotherapy, and in vivo dose monitoring. Investigations that have been performed using GEANT4 only are also mentioned to illustrate the potential of GATE. The very practical feature of GATE making it easy to model both a treatment and an imaging acquisition within the same frameworkis emphasized. The computational times associated with several applications are provided to illustrate the practical feasibility of the simulations using current computing facilities.

62 RADIOLOGY AND NUCLEAR MEDICINE↗
DOE OSTI2018

Dark Energy Survey Year 1 Results: Galaxy-Galaxy Lensing

We present galaxy-galaxy lensing measurements from 1321 sq. deg. of the Dark Energy Survey (DES) Year 1 (Y1) data. The lens sample consists of a selection of 660,000 red galaxies with highprecision photometric redshifts, known as redMaGiC, split into five tomographic bins in the redshift range 0.15 < z < 0:9. We use two different source samples, obtained from the Metacalibration (26 million galaxies) and im3shape (18 million galaxies) shear estimation codes, which are split into four photometric redshift bins in the range 0.2 < z < 1.3. Here, we perform extensive testing of potential systematic effects that can bias the galaxy-galaxy lensing signal, including those from shear estimation, photometric redshifts, and observational properties. Covariances are obtained from jackknife subsamples of the data and validated with a suite of log-normal simulations. We also use the shear-ratio geometric test to obtain independent constraints on the mean of the source redshift distributions, providing validation of those obtained from other photo-z studies with the same data. We find consistency between the galaxy bias estimates obtained from our galaxy-galaxy lensing measurements and from galaxy clustering, therefore showing the galaxy-matter cross-correlation coefficient r to be consistent with one, measured over the scales used for the cosmological analysis. The results in this work present one of the three two-point correlation functions, along with galaxy clustering and cosmic shear, used in the DES cosmological analysis of Y1 data, and hence the methodology and the systematics tests presented here provide a critical input for that study as well as for future cosmological analyses in DES and other photometric galaxy surveys.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2014

SU-C-16A-06: Optimum Radiation Source for Radiation Therapy of Skin Cancer

Purpose: Recently, different applicators are designed for treatment of the skin cancer such as scalp and legs, using Ir-192 HDR Brachytherapy Sources (IR-HDRS), Miniature Electronic Brachytherapy Sources (MEBXS), and External Electron Beam Radiation Therapy (EEBRT). Although, all of these methodologies may deliver the desired radiation dose to the skin, the dose to the underlying bone may become the limiting factor for selection of the optimum treatment technique. In this project the radiation dose delivered to the underlying bone has been evaluated as a function of the radiation source and thickness of the underlying bone. Methods: MC simulations were performed using MCNP5 code. In these simulations, the mono-energetic and non-divergent photon beams of 30 keV, 50 keV, and 70 keV for MEBXS, 380 keV photons for IR-HDRS, and 6 MeV mono-energetic electron beam for EEBRT were modeled. A 0.5 cm thick soft tissue (0.3 cm skin and 0.2 cm adipose) with underlying 0.5 cm cortical bone followed by 14 cm soft tissue are utilized for simulations. Results: Dose values to bone tissue as a function of beam energy and beam type, for a delivery of 5000 cGy dose to skin, were compared. These results indicate that for delivery of 5000 cGy dose to the skin surface with 30 keV, 50 keV, 70 keV of MEBXS, IR-HDRS, and EEBRT techniques, bone will receive 31750 cGy, 27450 cGy, 18550 cGy, 4875 cGy, and 10450 cGy, respectively. Conclusion: The results of these investigations indicate that, for delivery of the same skin dose, average doses received by the underlying bone are 5.2 and 2.2 times larger with a 50 keV MEBXS and EEBRT techniques than IR-HDRS, respectively.

07 ISOTOPE AND RADIATION SOURCES↗
DOE OSTI2016

SU-F-T-79: Monte Carlo Investigation of Optimizing Parameters for Modulated Electron Arc Therapy

Purpose: Electron arc therapy provides excellent dose distributions for treating superficial tumors along curved surfaces. However this modality has not received widespread application due to the lack of needed advancement in electron beam delivery, accurate electron dose calculation and treatment plan optimization. The aim of the current work is to investigate possible parameters that can be optimized for electron arc (eARC) therapy. Methods: The MCBEAM code was used to generate phase space files for 6 and 12MeV electron beam energies from a Varian trilogy machine. An Electron Multi-leaf collimator eMLC of 2cm thickness positioned at 82 cm source collimated distance was used in the study. Dose distributions for electron arcs were calculated inside a cylindrical phantom using the MCSIM code. The Cylindrical phantom was constructed with 0.2cm voxels and a 15cm diameter. Electron arcs were delivered with two different approaches. The first approach was to deliver the arc as segments of very small field widths. In this approach we also tested the impact of the segment size and the arc increment angle. The second approach is to deliver the arc as a sum of large fields each covering the whole target as seen from the beam eye view. Results: In considering 90 % as the prescription isodose line, the first approach showed a region of buildup proceeding before the prescription zone. This build up is minimizing with the second approach neglecting need for bolus. The second approach also showed less x-ray contamination. In both approaches the variation of the segment size changed the size and location of the prescription isodose line. The optimization process for eARC could involve interplay between small and large segments to achieve desired coverage. Conclusion: An advanced modulation of eARCs will allow for tailored dose distribution for superficial curved target as with challenging scalp cases.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2015

Electron-Beam Dynamics for an Advanced Flash-Radiography Accelerator

Beam dynamics issues were assessed for a new linear induction electron accelerator being designed for multipulse flash radiography of large explosively driven hydrodynamic experiments. Special attention was paid to equilibrium beam transport, possible emittance growth, and beam stability. Especially problematic would be high-frequency beam instabilities that could blur individual radiographic source spots, low-frequency beam motion that could cause pulse-to-pulse spot displacement, and emittance growth that could enlarge the source spots. Furthermore, beam physics issues were examined through theoretical analysis and computer simulations, including particle-in-cell codes. Beam instabilities investigated included beam breakup, image displacement, diocotron, parametric envelope, ion hose, and the resistive wall instability. The beam corkscrew motion and emittance growth from beam mismatch were also studied. It was concluded that a beam with radiographic quality equivalent to the present accelerators at Los Alamos National Laboratory will result if the same engineering standards and construction details are upheld.

43 PARTICLE ACCELERATORS↗
DOE OSTI2022

Initial development of a generic fluoride salt-cooled reactor model

Fluoride high-temperature reactors (FHRs) are high-temperature, low-pressure reactor concepts that use tri-structural isotropic (TRISO) fuel and molten fluoride salt coolant. These reactors have the potential to provide both electrical power and high-temperature process heat. We used generic FHR parameters for a pebble-bed FHR to develop an initial model with fresh fuel for a generic FHR (gFHR) in MELCOR and SCALE (NEWT and KENO). In this paper, we present the development of our gFHR models, which will serve as the baseline for a sensitivity and uncertainty analysis to quantify the range of possible source terms for FHRs in severe accidents. We present MELCOR results for fuel and coolant temperatures through the core, a nodalization study for the steady-state thermal hydraulic model, and development of reactor physics models in SCALE. As this work progresses, these models will be used to calculate source terms for a loss-of-forced-flow accident and to conduct a sensitivity study on this accident to establish a range of possible source terms. SCALE will provide reactor physics parameters like isotopic inventory, decay heat generation, and temperature coefficients of reactivity. Using the uncertainty quantification tools within SCALE, we will generate distributions for those parameters and will use the uncertainty quantification code RAVEN or DAKOTA to sample those distributions in MELCOR to quantify the impact of reactor physics and thermal hydraulic uncertainties on FHR source terms. (authors)

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗