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At least 1,747 records · Page 97

Particle-Tracking Proton Computed Tomography—Data Acquisition, Preprocessing, and Preconditioning

Proton CT (pCT) is a promising new imaging technique that can reconstruct relative stopping power (RSP) more accurately than x-ray CT in each cubic millimeter voxel of the patient. This, in turn, will result in better proton range accuracy and, therefore, smaller planned tumor volumes (PTV). The hardware description and some reconstructed images have previously been reported. In a series of two contributions, we focus on presenting the software algorithms that convert pCT detector data to the final reconstructed pCT images for application in proton treatment planning. There were several options on how to accomplish this, and we will describe our solutions at each stage of the data processing chain. In the first paper of this series, we present the data acquisition with the pCT tracking and energy-range detectors and how the data are preprocessed, including the conversion to the well-formatted track information from tracking data and water-equivalent path length from the data of a calibrated multi-stage energy-range detector. These preprocessed data are then used for the initial image formation with an FDK cone-beam CT algorithm. The output of data acquisition, preprocessing, and FDK reconstruction is presented along with illustrative imaging results for two phantoms, including a pediatric head phantom. The second paper in this series will demonstrate the use of iterative solvers in conjunction with the superiorization methodology to further improve the images resulting from the upfront FDK image reconstruction and the implementation of these algorithms on a hybrid CPU/GPU computer cluster.

42 ENGINEERING↗

Functional Insights of Salinity Stress-Related Pathways in Metagenome-Resolved Methanothrix Genomes

Recently, methanogenic archaea belonging to the genus Methanothrix were reported to have a fundamental role in maintaining stable ecosystem functioning in anaerobic bioreactors under different configurations/conditions. In this study, we reconstructed three Methanothrix metagenome-assembled genomes (MAGs) from granular sludge collected from saline upflow anaerobic sludge blanket (UASB) reactors, where Methanothrix harundinacea was previously implicated with the formation of compact and stable granules under elevated salinity levels (up to 20 g/L Na + ). Genome annotation and pathway analysis of the Methanothrix MAGs revealed a genetic repertoire supporting their growth under high salinity. Specifically, the most dominant Methanothrix (MAG_279), classified as a subspecies of Methanothrix_A harundinacea_D, had the potential to augment its salinity resistance through the production of different glycoconjugates via the N-glycosylation process, and via the production of compatible solutes as N ε -acetyl-β-lysine and ectoine. The stabilization and reinforcement of the cell membrane via the production of isoprenoids was identified as an additional stress-related pathway in this microorganism. The improved understanding of the salinity stress-related mechanisms of M. harundinacea highlights its ecological niche in extreme conditions, opening new perspectives for high-efficiency methanisation of organic waste at high salinities, as well as the possible persistence of this methanogen in highly-saline natural anaerobic environments.

59 BASIC BIOLOGICAL SCIENCES↗

ENnUI : Exemplar Navigator Using Inertial Sensors

SAND2025-04794O ENnUI: Exemplar Navigator Using Inertial Sensors helps users understand and compare different navigation algorithms that rely on inertial sensors. This reference library offers a collection of reference mechanization equations and methods for estimating the position and movement of vehicles over time. Rather than aiming for the highest precision or performance, ENnUI focuses on creating a user-friendly framework that allows users to benchmark their own algorithms against a standard set of tools. It is useful for post-processing data and real-time navigation solutions. Sandia National Laboratories is a multimission laboratory managed and operated by National Technology & Engineering Solutions of Sandia, LLC, a wholly owned subsidiary of Honeywell International Inc., for the U.S. Department of Energy’s National Nuclear Security Administration under contract DE-NA0003525.

Walker II, Michael [Sandia National Lab. (SNL-CA),↗

Development of a position–velocity–time-modulated two-dimensional ion beam figuring system for synchrotron x-ray mirror fabrication

With the rapid evolution of synchrotron x-ray sources, the demand for high-quality precision x-ray mirrors has greatly increased. Single nanometer shape accuracy is required to keep imaging capabilities at the diffraction limit. Ion beam figuring (IBF) has been used frequently for ultra-precision finishing of mirrors, but achieving the ultimate accuracy depends on three important points: careful alignment, accurate dwell time calculation and implementation, and accurate optical metrology. The Optical Metrology Group at National Synchrotron Light Source II has designed and built a position–velocity–time-modulated two-dimensional IBF system (PVT-IBF) with three novel characteristics: (1) a beam footprint on the mirror was used as a reference to align the coordinate systems between the metrology and the IBF hardware; (2) the robust iterative Fourier transform-based dwell time algorithm proposed by our group was applied to obtain an accurate dwell time map; and (3) the dwell time was then transformed to velocities and implemented with the PVT motion scheme. In this study, the technical aspects of the PVT-IBF systems are described in detail, followed by an experimental demonstration of the figuring results. In our first experiment, the 2D RMS in a 50mm×5mm clear aperture was reduced from 3.4 to 1.1 nm after one IBF run. In our second experiment, due to a 5 mm pinhole installed in front of the source, the 2D RMS in a 50mm×5mm clear aperture was reduced from 39.1 to 1.9 nm after three IBF runs, demonstrating that our PVT-IBF solution is an effective and deterministic figuring process.

47 OTHER INSTRUMENTATION↗

Pore-Scale Oil Connectivity and Displacement by Controlled-Ionic-Composition Waterflooding Using Synchrotron X-Ray Microtomography

Controlled-ionic-composition waterflooding is an economic and effective method to improve oil recovery in carbonate oil reservoirs. Recent studies show controlling the salinity and ionic composition of injection water can alter the wettability of carbonate mineral surfaces. The pore-scale oil connectivity and displacement by controlled-ionic-composition waterflooding in heterogeneous carbonate reservoirs, especially at the early stage, is still unclear. The goal of this study is to examine the role of ion concentrations and types in the oil displacement efficiency and investigate the impact of the waterflooding on the pore-scale oil displacement using the national synchrotron facility. A carbonate rock sample was flooded with synthetic high-salinity water and other water solutions with different sulfate concentrations. The waterflooding processes were visualized with synchrotron X-ray microtomography to follow the evolution of pore-scale oil/brine interactions at typical field flow rates. Experimental results show that the water with lower sulfate concentration and higher salinity did not change the wettability of the pore surfaces. Higher sulfate ion concentrations in the water, in contrast, altered the wettability of carbonate pore surfaces from oil-wet to neutral-wet within the first few minutes of waterflooding. Finally, novel insight was gained on the ability of water with high-sulfate concentration to displace oil in the small pores and through abundant oil channels, which could consequently lead to higher oil recovery from the carbonate rock.

04 OIL SHALES AND TAR SANDS↗

Verification and Validation of the STAT7 Code

This document presents the verification and validation of the STAT7 Version 1.0 code which has been developed to perform the steady-state thermal hydraulic safety calculation of the MIT Research Reactor required upon conversion of the reactor from high enrichment uranium fuel to low enrichment uranium fuel. The key capabilites of the code including the statistical processing, water property generation, and thermal hydraulic solution are verified independently. While the first two capabilites are checked using statistical tests and NIST data tables, each component of the thermal hydraulic solution is verified using simple geometry test problems. The comparison between results obtained by the code and hand calculations on these problems shows that each of these components work correctly. Additionally, a comprehensive comparison between STAT7 Version 1.0 and PLTEMP/ANL Version 4.2 calculations for a five-channel test problem is performed for the validation. The good agreement between the obtained results for all thermal hydraulic parameters belonging to the fuel core region is achieved. An issue in bypass flowrate calculation was detected when both fin-friction and bypass flow claculations are involved. This problem can be corrected in a later version of the code, however, does not affect the application of STAT7 code as it has been used to date where the flow distribution in the core region and bypass channel is specified as an input parameter.

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

Verification and Validation of the STAT7 Code

This document presents the verification and validation of the STAT7 Version 1.0 code which has been developed to perform the steady-state thermal hydraulic safety calculation of the MIT Research Reactor required upon conversion of the reactor from highly enriched uranium fuel to low- enriched uranium fuel. The key capabilities of the code including the statistical processing, water property generation, and thermal hydraulic solution are verified independently. While the first two capabilities are checked using statistical tests and NIST data tables, each component of the thermal hydraulic solution is verified using simple geometry test problems. The comparison between results obtained by the code and hand calculations on these problems shows that each of these components work correctly. Additionally, a comprehensive comparison between STAT7 Version 1.0 and PLTEMP/ANL Version 4.2 calculations for a five-channel test problem is performed for the validation. The good agreement between the obtained results for all thermal hydraulic parameters belonging to the fuel core region is achieved. An issue in bypass flowrate calculation was detected when both fin-friction and bypass flow calculations are involved. This problem can be corrected in a later version of the code. However, it does not affect the application of STAT7 as it has been used to date where the flow distribution in the core region and bypass channel is specified as an input parameter.

97 MATHEMATICS AND COMPUTING↗

Computer Simulation of Complex Systems at the Extremes of pH (Final Report)

During the final funding period of the above-mentioned grant, a number of key milestones were achieved as they relate to the Separation Science program. Below are the descriptions of those efforts and the papers published in support of them (see also submitted publication list). There was a strong focus during the final funding period was on hydrated protons and the unique properties of acidic solutions, which as pertinent to many separations processes.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Zero-Order Reaction Kinetics (Zero-RK): Enabling the Use of Detailed Chemical Kinetics in Combustion Simulations (CRADA Final Report)

This was a collaborative effort between Lawrence Livermore National Security, LLC (LLNS), as manager and operator of Lawrence Livermore National Laboratory (LLNL) and Gamma Technologies, LLC (GT or Participante), to incorporate the ability to access LLNL chemical kinetics technologies while using GT-SUITE, GT’s market leading engine simulation software. At the end of the project, LLNL has released Zero-RK version 3.5 with zero- and one-dimensional (0-D and 1-D) solver functionality that interfaces with GT’s GT-SUITE v2023 and later releases. GT has tested its product to assure their customers that the interface can provide reduction in chemistry solution time for detailed chemistry simulations. The process has also positioned GT to easily benefit from future improvements of the Zero-RK suite of tools developed under the DOE Vehicle Technologies Office.

33 ADVANCED PROPULSION SYSTEMS↗

Generating Co-expression Networks for Three Cyanobacteria: Synechococcus sp. PCC 7942, Synechococcus sp. PCC 7002, Synechocystis sp. PCC 6803

Cyanobacteria are photosynthetic organisms capable of high growth rate and represent a promising bioplatform for harnessing the sun’s energy to make biofuel. Additionally, the process of photosynthesis absorbs CO2 from the environment. Understanding the metabolic processes involved in photosynthesis could lead to solutions to the recent rise of CO2 concentration in Earth’s atmosphere and the associated climate change. More research on the transcriptional regulation of these cells is needed to learn how to harness the untapped potential of cyanobacteria for these applications. Transcriptional analysis via RNA-seq provides an understanding of how gene expression changes at the mRNA level under diverse growing conditions. I systematically collected and analyzed RNA-Seq data obtained under a variety of conditions and available on the NCBI database for three cyanobacteria model organisms: Synechococcus elongatus sp. PCC 7942, Synechococcus sp. PCC 7002, and Synechocystis sp. PCC 6803. For each organism, the data was mapped to a reference genome to characterize the RNA expression profile. Samples were checked for quality based on the number of reads and the correlation of the expression profile between labeled replicates. All samples were transformed into transcripts per million reads, followed by a log transformation to account for the wide range of sample sizes. Gene co-expression networks were generated and analyzed for each species using Cytoscape. These networks provide a base level of gene expression for each species. The network topology and high-betweeness nodes of these networks need to be analyzed further to provide insight on potential ways to harness cyanobacteria genetics. Additionally, these datasets can be used together to form a core genome network analysis- one that includes only the genes that are homologous between the three species. This project has prepared the way for a more in-depth study on photosynthetic microbes on a genetic level.

59 BASIC BIOLOGICAL SCIENCES↗

Solar Decarbonization of Paraffin Dehydrogenation Through Particle Heat Carriers (Final Technical Report)

This project focuses on solutions to decarbonize high-temperature catalytic processes using solar thermal heat. The primary project goal is to show the validity of a moving packed bed reactor for propane dehydrogenation using catalyst particles as the heat carrier for the reaction, which can be heated by concentrated solar energy in a particle receiver. This concept, if further developed, may provide a cost-effective pathway for converting lower value gases to important chemical precursors for industrial materials using only renewable energy. The project was divided into six tasks. In Task 1, DFT calculations were performed to understand the role of Pt and Sn in the catalytic dehydrogenation reaction. In Task 2 chemical kinetics measurements were made for several catalyst formulations at high temperatures. In Task 3, the solar absorptance of catalyst particles was compared to the absorptance of commonly used materials in particle receivers. In Task 4, numerical models were developed which could predict performance of the complete system and predict specific temperatures in the system. In Task 5, a prototype system was designed, fabricated, and tested to show the validity of the concept. Task 6 concerned project management activities. Experiments with the prototype showed repeatable thermal performance at temperatures targeted for the reaction. A limited set of tests were done with active catalyst and propane dehydrogenation, showing conversion of propane to propylene with a range of conversions and selectivities. The results are promising, and the prototype designed was reliable during testing, and the team expects that further development of the prototype would yield improved results. A numerical model framework based on coupled fluid and particle mechanics was developed with high computational efficiency using GPU calculations. The model may prove highly useful for evaluating other high-temperature particle systems. However, it was determined that simpler porous media models were good fits for the needs of the current moving packed bed concept. Data showing strong solar absorption of the particles validates the plan of using existing solar particle receivers with only a change in the particle type. Catalyst investigation showed that Pt 1 Sn 3 is the most viable candidate for developing PtSn catalysts for high temperature propane dehydrogenation, considering the balance of activity, selectivity, and deactivation. This project completed an initial study of various factors needed to incorporate a moving bed catalytic reactor for propane dehydrogenation into a concentrated solar thermal particle system. Future developments may allow this technology to be scaled up and help to use solar thermal energy to decarbonize not only the propane dehydrogenation reaction, but other gas-solid catalytic reactions at similar temperatures.

14 SOLAR ENERGY↗

Zero Order Reactioin Kinetics: Enabling the use of Detailed Chemical Kinetics in Combustion Simulations (Final CRADA Report)

This was a collaborative effort between Lawrence Livermore National Security, LLC (LLNS), as manager and operator of Lawrence Livermore National Laboratory (LLNL) and Gamma Technologies, LLC (GT or Participante), to incorporate the ability to access LLNL chemical kinetics technologies while using GT-SUITE, GT’s market leading engine simulation software. At the end of the project, LLNL has released Zero-RK version 3.5 with zero- and one-dimensional (0-D and 1-D) solver functionality that interfaces with GT’s GT-SUITE v2023 and later releases. GT has tested its product to assure their customers that the interface can provide reduction in chemistry solution time for detailed chemistry simulations. The process has also positioned GT to easily benefit from future improvements of the Zero-RK suite of tools developed under the DOE Vehicle Technologies Office.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Overview on the theory and phenomenology of generalized parton distributions

We give a brief overview on the theory and phenomenology of generalized parton distributions (GPDs), including the recently developed framework of single-diffractive hard exclusive process for matching GPDs to experimental observables. We concentrate on the extraction of GPDs from experimental processes, especially on the challenges and potential solutions regarding the separation of different GPDs and the extraction of $x$-dependence of GPDs, which is critically important for constructing the tomographic images and matching the $x$-moments of GPDs to various emergent hadron properties.

Qiu, Jianwei↗

Enhancing Even Gas Distribution in Porous Media with Radial Flow

Packed beds, such as those used in thermal energy storage (TES) systems, typically use flow from one end to the other. This axial flow configuration leads to inefficiencies due to dispersion effects and high pressure drop. Instead of axial flow, this work proposes radial flow in packed beds, where a central tube provides flow that transports fluid from the center to the bed’s wall. Radial flow could be a promising solution to increase the efficiency of charging/discharging processes in TES systems. For instance, studies have been conducted on the thermal behavior during the charging process using radial flow and axial flow, and it was found that radial flow is better than axial flow in terms of thermal performance, where more energy can be stored in the storage tank during the charging process. However, the design of the radial pipe should be optimized to improve even flow distribution. In this work, numerical investigations on different designs were analyzed to enhance even flow gas distribution in the porous media when using this radial technique. This work shows the impact of different parameters on the even flow distribution into the packed bed for two different designs: 1) one radial tube at the center to provide the radial flow along with an annular tube at the wall to receive the flow, and 2) one radial tube at the center and four radial tubes at the wall. Air was used as fluid and 6 mm alumina beads as packing materials. Computational fluid dynamics (CFD) models in COMSOL Multiphysics were used to simulate the behavior of air flow through the piping and packed bed. It was found that the flow into the bed from the radial tube can be affected by different parameters: space between the holes, size/diameter of the holes, number of segments/zones, number of the holes in each zone and the length of each zone.

Beck, David M.↗

Density and flux distributions in the lunar atmosphere due to point and line sources

Apart from the globally distributed ambient gases in the lunar atmosphere, localized gas sources, such as volcanos, may have a measurable effect on the process of shaping the lunar atmosphere. Analytic solutions were obtained for the spatial distributions of neutral gas densities and fluxes due to point and line sources at the lunar surface. Both density and flux profiles are strong functions of the distance from the source to the point of observation. The study also reveals that: (1) The location of the source may be identified from the density and flux profiles. (2) If the gas species is known, the temperature of the gas may be determined from the density gradient at a distance of several scale heights from the source. (3) The strength of the gas source may be determined by the magnitudes of density and flux.

Yeh, T. T. J.↗

Monoenergetic-source solutions of the steady-state cosmic-ray equation of transport

Analytic, steady state, solutions of the cosmic-ray equation of transport for the solar cavity are given for monoenergetic particles released continuously at a specified heliocentric radius. The solutions are used to illustrate energy change processes. A new feature is an apparent buildup of particles at very low energies.

Webb, G. M.↗

Programmable convolution via the chirp Z-transform with CCD's

Technique filtering by convolution in frequency domain rather than in time domain presents possible solution to problem of programmable transversal filters. Process is accomplished through utilization of chip z-transform (CZT) with charge-coupled devices

Buss, D. D.↗