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DOE OSTI2021

Evidence of a $J/ψΛ$ structure and observaton of excited $Ξ_{b}^{-}$ → $J/ψΛΚ^{-}$ decay

First evidence of a structure in the $J/ψΛ$ invariant mass distribution is obtained from an amplitude analysis of $Ξ_{b}^{-}$ → $J/ψΛΚ^{-}$ decays. The observed structure is consistent with being due to a charmonium pentaquark with strangeness with a significance of 3.1σ including systematic uncertainties and look elsewhere effect. Its mass and width are determined to be 4458.8 ± $2.9_{-1.1}^{+4.7}$ MeV and 17.3 ± $6.5_{-5.7}^{+8.0}$ MeV respectively, where the quoted uncertainties are statistical and systematic. The structure is also consistent with being due to two resonances. In addition, the narrow excited $Ξ^{-}$ states, $Ξ(1690)^{-}$ and $Ξ(1820)^{-}$, are seen for the first time in a $Ξ_{b}^{-}$ decay, and their masses and widths are measured with improved precision. The analysis is performed using $pp$ collision data corresponding to a total integrated luminosity of 9 fb -1 , collected with the LHCb experiment at centre-of-mass energies of 7, 8 and 13 TeV.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

DOE OSTI2026

Neural network reconstruction of the DIII-D tokamak plasma boundary using a reduced set of diagnostics

This study investigates the feasibility of reconstructing the last closed flux surface in the DIII-D tokamak using neural network models trained on reduced input feature sets, addressing an ill-posed task. Two models are compared: one trained solely on coil currents and another incorporating coil currents, plasma current and loop voltage. The model trained exclusively on coil currents achieved a mean point displacement of $0.04$ m on a held-out test set, while the inclusion of plasma current and loop voltage reduced the error to $0.03$ m. This comparison highlights the trade-offs between input feature complexity and reconstruction accuracy, demonstrating the potential of machine learning algorithms to perform effectively in data-limited environments, such as those expected in fusion power plants due to diagnostic constraints imposed by the presence of blankets and shielding.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2025

COCOMO2: A Coarse-Grained Model for Interacting Folded and Disordered Proteins

Biomolecular interactions are essential in many biological processes, including complex formation and phase separation processes. Coarse-grained computational models are especially valuable for studying such processes via simulation. Here, we present COCOMO2, an updated residue-based coarse-grained model that extends its applicability from intrinsically disordered peptides to folded proteins. This is accomplished with the introduction of a surface exposure scaling factor, which adjusts interaction strengths based on solvent accessibility, to enable the more realistic modeling of interactions involving folded domains without additional computational costs. COCOMO2 was parametrized directly with solubility and phase separation data to improve its performance on predicting concentration-dependent phase separation for a broader range of biomolecular systems compared to the original version. COCOMO2 enables new applications including the study of condensates that involve IDPs together with folded domains and the study of complex assembly processes. COCOMO2 also provides an expanded foundation for the development of multiscale approaches for modeling biomolecular interactions that span from residue-level to atomistic resolution.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2025

Correction to “COCOMO2: A Coarse-Grained Model for Interacting Folded and Disordered Proteins”

Molecular interactions↗

DOE OSTI2025

Incorporating the Acclimation of Photosynthesis and Leaf Respiration in the Noah‐MP Land Surface Model: Model Development and Evaluation

Abstract Realistic simulation of leaf photosynthetic and respiratory processes is needed for accurate prediction of the global carbon cycle. These two processes systematically acclimate to long‐term environmental changes by adjusting photosynthetic and respiratory traits (e.g., the maximum photosynthetic capacity at 25°C ( V cmax,25 ) and the leaf respiration rate at 25°C ( R 25 )) following increasingly well‐understood principles. While some land surface models (LSMs) now account for thermal acclimation, they do so by assigning empirical parameterizations for individual plant functional types (PFTs). Here, we have implemented an Eco‐Evolutionary Optimality (EEO)‐based scheme to represent the universal acclimation of photosynthesis and leaf respiration to multiple environmental effects, and that therefore requires no PFT‐specific parameterizations, in a standard version of the widely used LSM, Noah MP. We evaluated model performance with plant trait data from a 5‐year experiment and extensive global field measurements, and carbon flux measurements from FLUXNET2015. We show that observed R 25 and V cmax,25 vary substantially both temporally and spatially within the same PFT ( C.V. >20%). Our EEO‐based scheme captures 62% of the temporal and 70% of the spatial variations in V cmax,25 (73% and 54% of the variations in R 25 ). The standard scheme underestimates gross primary production by 10% versus 2% for the EEO‐based scheme and generates a larger spread in r (correlation coefficient) across flux sites (0.79 ± 0.16 vs. 0.84 ± 0.1, mean ± S.D.). The standard scheme greatly overestimates canopy respiration (bias: ∼200% vs. 8% for the EEO scheme), resulting in less CO 2 uptake by terrestrial ecosystems. Our approach thus simulates climate‐carbon coupling more realistically, with fewer parameters.

Ren, Yanghang [Department of Earth System Science ↗

DOE OSTI2025

SANE: strategic autonomous non-smooth exploration for multiple optima discovery in multi-modal and non-differentiable black-box functions

Both computational and experimental material discovery bring forth the challenge of exploring multidimensional and multimodal parameter spaces, such as phase diagrams of Hamiltonians with multiple interactions, composition spaces of combinatorial libraries, material structure image spaces, and molecular embedding spaces. Often these systems are black-boxes and time-consuming to evaluate, which resulted in strong interest towards active learning methods such as Bayesian optimization (BO). However, these systems are often noisy which make the black box function severely multi-modal and non-differentiable, where a vanilla BO can get overly focused near a single or faux optimum, deviating from the broader goal of scientific discovery. To address these limitations, here we developed Strategic Autonomous Non-Smooth Exploration (SANE) to facilitate an intelligent Bayesian optimized navigation with a proposed cost-driven probabilistic acquisition function to find multiple global and local optimal regions, avoiding the tendency to becoming trapped in a single optimum. To distinguish between a true and false optimal region due to noisy experimental measurements, a human (domain) knowledge driven dynamic surrogate gate is integrated with SANE. We implemented the gate-SANE into pre-acquired piezoresponse spectroscopy data of a ferroelectric combinatorial library with high noise levels in specific regions, and piezoresponse force microscopy (PFM) hyperspectral data. SANE demonstrated better performance than classical BO to facilitate the exploration of multiple optimal regions and thereby prioritized learning with higher coverage of scientific values in autonomous experiments. Our work showcases the potential application of this method to real-world experiments, where such combined strategic and human intervening approaches can be critical to unlocking new discoveries in autonomous research.

Biswas, Arpan [University of Tennessee, Knoxville,↗

DOE OSTI2020

First-principles equations of state and structures of liquid metals in multi-megabar conditions

Liquid metals at extreme pressures and temperatures are widely interested in the high-pressure community. Based on density functional theory molecular dynamics, we conduct first-principles investigations on the equation of state ( EOS) and structures of four metals (Cu, Fe, Pb, and Sn) at 1.5–5 megabar conditions and 5 × 10 3 –4 × 10 4 K. Our first-principles EOS data enable evaluating the performance of four EOS models in predicting Hugoniot densities and temperatures of the four systems. We find the melting temperature of Cu is 1000–2000 K higher and shows a similar Clapeyron slope, in comparison to those of Fe. Our structure, coordination number, and diffusivity analysis indicates all the four liquid metals form similar simple close-packed structures. Our results set theoretical benchmarks for EOS development and structures of metals in their liquid states and under dynamic compression.

36 MATERIALS SCIENCE↗

DOE OSTI2021

Reproducibility of protein x-ray diffuse scattering and potential utility for modeling atomic displacement parameters

Protein structure and dynamics can be probed using x-ray crystallography. Whereas the Bragg peaks are only sensitive to the average unit-cell electron density, the signal between the Bragg peaks—diffuse scattering—is sensitive to spatial correlations in electron-density variations. Although diffuse scattering contains valuable information about protein dynamics, the diffuse signal is more difficult to isolate from the background compared to the Bragg signal, and the reproducibility of diffuse signal is not yet well understood. We present a systematic study of the reproducibility of diffuse scattering from isocyanide hydratase in three different protein forms. Both replicate diffuse datasets and datasets obtained from different mutants were similar in pairwise comparisons (Pearson correlation coefficient ≥0.8). The data were processed in a manner inspired by previously published methods using custom software with modular design, enabling us to perform an analysis of various data processing choices to determine how to obtain the highest quality data as assessed using unbiased measures of symmetry and reproducibility. The diffuse data were then used to characterize atomic mobility using a liquid-like motions (LLM) model. This characterization was able to discriminate between distinct anisotropic atomic displacement parameter (ADP) models arising from different anisotropic scaling choices that agreed comparably with the Bragg data. Our results emphasize the importance of data reproducibility as a model-free measure of diffuse data quality, illustrate the ability of LLM analysis of diffuse scattering to select among alternative ADP models, and offer insights into the design of successful diffuse scattering experiments.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2020

Role of shell composition and morphology in achieving single-emitter photostability for green-emitting “giant” quantum dots

The use of the varied chemical reactivity of precursors to drive the production of a desired nanocrystal architecture has become a common method to grow thick-shell graded alloy quantum dots (QDs) with robust optical properties. Conclusions on their behavior assume the ideal chemical gradation and uniform particle composition. In this work, advanced analytical electron microscopy (high-resolution scanning transmission electron microscopy coupled with energy dispersive spectroscopy) is used to confirm the nature and extent of compositional gradation and these data are compared with performance behavior obtained from single-nanocrystal spectroscopy to elucidate structure, chemical-composition, and optical-property correlations. In particular, the evolution of the chemical structure and single-nanocrystal luminescence was determined for a time-series of graded-alloy “CdZnSSe/ZnS” core/shell QDs prepared in a single-pot reaction. In a separate step, thick (~6 monolayers) to giant (>14 monolayers) shells of ZnS were added to the alloyed QDs via a successive ionic layer adsorption and reaction (SILAR) process, and the impact of this shell on the optical performance was also assessed. By determining the degree of alloying for each component element on a per-particle basis, we observe that the actual product from the single-pot reaction is less “graded” in Cd and more so in Se than anticipated, with Se extending throughout the structure. The latter suggests much slower Se reaction kinetics than expected or an ability of Se to diffuse away from the initially nucleated core. It was also found that the subsequent growth of thick phase-pure ZnS shells by the SILAR method was required to significantly reduce blinking and photobleaching. However, correlated single-nanocrystal optical characterization and electron microscopy further revealed that these beneficial properties are only achieved if the thick ZnS shell is complete and without large lattice discontinuities. Thus, we identify the necessary structural design features that are required for ideal light emission properties in these green-visible emitting QDs.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2022

Estimation of stagnation performance metrics in magnetized liner inertial fusion experiments using Bayesian data assimilation

Here we present a new analysis methodology that allows for the self-consistent integration of multiple diagnostics including nuclear measurements, x-ray imaging, and x-ray power detectors to determine the primary stagnation parameters, such as temperature, pressure, stagnation volume, and mix fraction in magnetized liner inertial fusion (MagLIF) experiments. The analysis uses a simplified model of the stagnation plasma in conjunction with a Bayesian inference framework to determine the most probable configuration that describes the experimental observations while simultaneously revealing the principal uncertainties in the analysis. We validate the approach by using a range of tests including analytic and three-dimensional MHD models. An ensemble of MagLIF experiments is analyzed, and the generalized Lawson criterion χ is estimated for all experiments.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2024

A versatile high-speed x-ray microscope for sub-10 nm imaging

We have developed a next-generation scanning x-ray microscope RASMI (RApid Scanning Microscopy Instrument) for high-throughput tomographic imaging. RASMI is installed at the hard x-ray nanoprobe beamline at NSLS-II and is capable of manipulating 1D multilayer Laue lenses (MLLs) and 2D optics (both zone plates and monolithically assembled 2D MLLs). The sample scanning stage utilizes line-focusing interferometry as an encoder while performing fly-scanning data acquisition. The system can be configured for both position- and time-triggering modes during fly-scanning. The microscope demonstrated a detector-limited data acquisition rate of 1.25 kHz during ptychography measurements. The initial x-ray results yielded a sample-limited resolution of ∼6 nm in 2D. RASMI can be adopted for in-vacuum applications and is a foundation for the next-generation scanning microscopy systems to be developed and commissioned at NSLS-II.

36 MATERIALS SCIENCE↗

DOE OSTI2025

Optimal reconstruction of baryon acoustic oscillations for DESI 2024

Baryon acoustic oscillations (BAO) provide a robust standard ruler to measure the expansion history of the Universe through galaxy clustering. Density-field reconstruction is now a widely adopted procedure for increasing the precision and accuracy of the BAO detection. With the goal of finding the optimal reconstruction settings to be used in the DESI 2024 galaxy BAO analysis, we assess the sensitivity of the post-reconstruction BAO constraints to different choices in our analysis configuration, performing tests on blinded data from the first year of DESI observations (DR1), as well as on mocks that mimic the expected clustering and selection properties of the DESI DR1 target samples. Overall, we find that BAO constraints remain robust against multiple aspects in the reconstruction process, including the choice of smoothing scale, treatment of redshift-space distortions, fiber assignment incompleteness, and parameterizations of the BAO model. We also present a series of tests that DESI followed in order to assess the maturity of the end-to-end galaxy BAO pipeline before the unblinding of the large-scale structure catalogs.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2025

Impact and mitigation of spectroscopic systematics on DESI DR1 clustering measurements

The large scale structure catalogs within DESI Data Release 1 (DR1) use nearly 6 million galaxies and quasars as tracers of the large-scale structure of the universe to measure the expansion history with baryon acoustic oscillations and the growth of structure with redshift-space distortions. In order to take advantage of DESI's unprecedented statistical power, we must ensure that the galaxy clustering measurements are unaffected by non-cosmological density fluctuations. One source of spurious fluctuations comes from variation in galaxy density with spectroscopic observing conditions, lowering the redshift efficiency (and thus galaxy density) in certain areas of the sky. We measure the uniformity of the redshift success rate for DESI luminous red galaxies (LRG), bright galaxies (BGS) and quasars (QSO), complementing the detailed discussion of emission line galaxy (ELG) systematics in a companion paper [1]. We find small but significant fluctuations of up to 3% in redshift success rate with the effective spectroscopic signal-to-noise, and create and describe weights that remove these fluctuations. We also describe the process to identify and remove data from certain poorly performing fibers from DESI DR1, and measure the stability of the redshift success rate with time. Finally, we find small but significant correlations of redshift success rate with position on the focal plane, survey speed, and number of exposures required, and show the impact of weights correcting these trends on the power spectrum multipoles and on cosmological parameters from BAO and RSD fits. These corrections change the best-fit parameters by <15% of their statistical errors, and thus contribute negligibly to the overall DESI error budget.

cosmological parameters from LSS↗

DOE OSTI2021

Search for the rare decay $ B^0\to J/ \psi\phi$*

A search for the rare decay $ B^0\to J/ \psi\phi$ is performed using $ pp$ collision data collected with the LHCb dete-ctor at centre-of-mass energies of 7, 8 and 13 TeV, corresponding to an integrated luminosity of 9 fb -1 . No significant signal of the decay is observed and an upper limit of $ 1.1 \times 10^{-7}$ at 90% confidence level is set on the branching fraction.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2021

Search for the doubly heavy baryons $ {{{{\varOmega}_{bc}^{0}}}} $ and $ {{{{\varXi}_{bc}^{0}}}} $ decaying to $ {{{{\varLambda}^+_c}}} {{{{\pi}^-}}} $ and $ {{{{\varXi}^+_c}}} {{{{\pi}^-}}} $ *

The first search for the doubly heavy $ {{{{\varOmega}_{bc}^{0}}}} $ baryon and a search for the $ {{{{\varXi}_{bc}^{0}}}} $ baryon are performed using $ pp $ collision data collected via the $ {\rm{LHCb}} $ experiment from 2016 to 2018 at a centre-of-mass energy of $ 13 \;{\rm{TeV}} $, corresponding to an integrated luminosity of 5.2 $ \;{\rm{f}}{{\rm{b}}^{ - 1}} $. The baryons are reconstructed via their decays to $ {{{{\varLambda}^+_c}}} {{{{\pi}^-}}} $ and $ {{{{\varXi}^+_c}}} {{{{\pi}^-}}} $. No significant excess is found for invariant masses between 6700 and 7300 $ \;{\rm{MeV}}/{c^2} $, in a rapidity range from 2.0 to 4.5 and a transverse momentum range from 2 to 20 $ \;{\rm{MeV}}/{c} $. Upper limits are set on the ratio of the $ {{{{\varOmega}_{bc}^{0}}}} $ and $ {{{{\varXi}_{bc}^{0}}}} $ production cross-section times the branching fraction to $ {{{{\varLambda}^+_c}}}{{{{\pi}^-}}} $ ( $ {{{{\varXi}^+_c}}}{{{{\pi}^-}}} $) relative to that of the $ {{{{\varLambda}^0_b}}} $ ( $ {{{{\varXi}_{b}^{0}}}} $) baryon, for different lifetime hypotheses, at 95% confidence level. The upper limits range from $ 0.5\times10^{-4} $ to $ 2.5\times10^{-4} $ for the $ {{{{{{{{\varOmega}_{bc}^{0}}}}{{\rightarrow }}{{{{\varLambda}^+_c}}}{{{{\pi}^-}}}}}}} $ ( $ {{{{{{{{\varXi}_{bc}^{0}}}}{{\rightarrow }}{{{{\varLambda}^+_c}}}{{{{\pi}^-}}}}}}} $) decay, and from $ 1.4\times10^{-3} $ to $ 6.9\times10^{-3} $ for the $ {{{{{{{{\varOmega}_{bc}^{0}}}}{{\rightarrow }}{{{{\varXi}^+_c}}}{{{{\pi}^-}}}}}}} $ ( $ {{{{{{{{\varXi}_{bc}^{0}}}}{{\rightarrow }}{{{{\varXi}^+_c}}}{{{{\pi}^-}}}}}}} $) decay, depending on the considered mass and lifetime of the $ {{{{\varOmega}_{bc}^{0}}}} $ ( $ {{{{\varXi}_{bc}^{0}}}} $) baryon.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2022

Number of J/ψ events at BESIII*

Using inclusive decays of $J/\psi $, a precise determination of the number of $J/\psi $ events collected with the BESIII detector was performed. For the two data sets taken in 2009 and 2012, the numbers of $J/\psi $ events were recalculated to be $ (224.0 \pm 1.3)\times10^6 $ and $ (1088.5 \pm 4.4)\times10^6 $, respectively; these numbers are in good agreement with the previous measurements. For the $J/\psi $ sample taken in 2017–2019, the number of events was determined to be $ (8774.0 \pm 39.4)\times10^{6} $. The total number of $J/\psi $ events collected with the BESIII detector was determined to be $ (10087 \pm 44)\times10^{6} $, where the uncertainty is dominated by systematic effects, and the statistical uncertainty is negligible.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2022

The Octopus processor for the CMS L1 muon trigger for High Luminosity LHC

The upgraded L1 muon trigger system of the CMS experiment in the High Luminosity Large Hadron Collider is based on custom processors featuring large Field Programmable Gate Arrays (FPGAs) connected by large numbers of optical links. These provide the I/O bandwidth and power necessary to process the complex algorithms used during the collection of physics data. The design and performance requirements of these processors creates significant challenges in signal integrity, power delivery, and thermal management. In this paper we describe the Octopus processor, featuring a large Xilinx Virtex Ultrascale+ FPGA and up to 128 links interfaced to optics through high quality twin-ax copper cables. Results on signal integrity at 25 Gb/s and the first demonstration of 50+ Gb/s links with pluggable optics in CMS are also shown, demonstrating bit error rates below 10 –15 at a 95% confidence level. The thermal performance is measured inside an Advanced-TCA crate with acceptable thermal margins up to 200 W of chip power. Future improvements are mentioned, potentially allowing operation at up to 300 W.

Instruments & Instrumentation↗

DOE OSTI2025

First-ever deployment of a SiPM-on-tile calorimeter in a collider: a parasitic test with 200 GeV p p collisions at RHIC.

We describe the testing of a prototype SiPM-on-tile iron-scintillator calorimeter at the Relativistic Heavy Ion Collider (RHIC) during its 200 GeV p p run in 2024. The prototype, measuring 20 × 20 cm 2 and 24 radiation lengths in depth, was positioned in the STAR experimental hall, approximately 8 m from the interaction point and 65 cm from the beam line, covering a pseudorapidity range of about 3.1 < η < 3.4. By using the dark current of a reference SiPM as a radiation monitor, we estimate that the prototype was exposed to a fluence of about 10 10 1-MeV n eq /cm 2 . Channel-by-channel calibration was performed in a data-driven way with the signature from minimum-ionizing particles during beam-on conditions. AGeant4 detector simulation, with inputs from thePythia8 event generator, describes measurements of energy spectra and hit multiplicities reasonably well. These results mark the first deployment, commissioning, calibration, and long-term operation of a SiPM-on-tile calorimeter in a collider environment. This experimental campaign will guide detector designs and operational strategies for the ePIC detector at the future EIC, as well as other applications.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗