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At least 1,747 records · Page 97
All sourcesNASA NTRSDOE OSTI
DOE OSTI2022

Improvement of eukaryotic protein predictions from soil metagenomes

During the last decades, metagenomics has highlighted the diversity of microorganisms from environmental or host-associated samples. Most metagenomics public repositories use annotation pipelines tailored for prokaryotes regardless of the taxonomic origin of contigs. Consequently, eukaryotic contigs with intrinsically different gene features, are not optimally annotated. Using a bioinformatics pipeline, we have filtered 7.9 billion contigs from 6,872 soil metagenomes in the JGI’s IMG/M database to identify eukaryotic contigs. We have re-annotated genes using eukaryote-tailored methods, yielding 8 million eukaryotic proteins and over 300,000 orphan proteins lacking homology in public databases. Comparing the gene predictions we made with initial JGI ones on the same contigs, we confirmed our pipeline improves eukaryotic proteins completeness and contiguity in soil metagenomes. The improved quality of eukaryotic proteins combined with a more comprehensive assignment method yielded more reliable taxonomic annotation. This dataset of eukaryotic soil proteins with improved completeness, quality and taxonomic annotation reliability is of interest for any scientist aiming at studying the composition, biological functions and gene flux in soil communities involving eukaryotes.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2023

BEYONDPLANCK II. CMB mapmaking through Gibbs sampling

We present a Gibbs sampling solution to the mapmaking problem for cosmic microwave background (CMB) measurements that builds on existing destriping methodology. Gibbs sampling breaks the computationally heavy destriping problem into two separate steps: noise filtering and map binning. Considered as two separate steps, both are computationally much cheaper than solving the combined problem. This provides a huge performance benefit as compared to traditional methods and it allows us, for the first time, to bring the destriping baseline length to a single sample. Here, we applied the Gibbs procedure to simulated Planck 30 GHz data. We find that gaps in the time-ordered data are handled efficiently by filling them in with simulated noise as part of the Gibbs process. The Gibbs procedure yields a chain of map samples, from which we are able to compute the posterior mean as a best-estimate map. The variation in the chain provides information on the correlated residual noise, without the need to construct a full noise covariance matrix. However, if only a single maximum-likelihood frequency map estimate is required, we find that traditional conjugate gradient solvers converge much faster than a Gibbs sampler in terms of the total number of iterations. The conceptual advantages of the Gibbs sampling approach lies in statistically well-defined error propagation and systematic error correction. This methodology thus forms the conceptual basis for the mapmaking algorithm employed in the BEYONDPLANCK framework, which implements the first end-to-end Bayesian analysis pipeline for CMB observations.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2023

Measuring scale-dependent shape anisotropy by coarse-graining: Application to inhomogeneous Rayleigh-Taylor turbulence

Here, we generalize the “filtering spectrum” to probe scales along different directions by spatial coarse-graining. This multidimensional filtering spectrum quantifies the spectral content of flows that are not necessarily homogeneous. From multidimensional spectral information, we propose a simple metric for shape anisotropy at various scales. The method is applied to simulations of two-dimensional (2D) and 3D Rayleigh-Taylor (RT) turbulence, which is inhomogeneous and anisotropic. We show that 3D RT has clear shape anisotropy at large scales with approximately 4:3 vertical to horizontal aspect ratio but tends toward isotropy at small scales as expected. In sharp contrast, we find that RT in 2D simulations, which are still the main modeling framework for many applications, is isotropic at large scales and its shape anisotropy increases at smaller scales where structures tend to be horizontally elongated. While this may be surprising, it is consistent with recent results that large-scale isotropy in 2D RT is due to the generation of a large-scale overturning circulation via an upscale cascade, while small-scale anisotropy is due to the stable stratification resultant from such overturning and the inefficient mixing in 2D.

42 ENGINEERING↗
DOE OSTI2021

Comparison of Infrasound Wind Noise Reduction Systems for Use in Temporary Deployments

Infrasound, or low frequency sound 20 Hz, is produced by a variety of natural and anthropogenic sources. Wind also generates signals within this frequency band and serves as a persistent source of infrasonic noise. Infrasound sensors measure pressure fluctuations, which scale with the ambient density and velocity fluctuations of ground winds. Here we compare four different wind noise reduction systems, or "filters", and make recommendations for their use in temporary infrasound deployments. Our results show that there are two filters that are especially effective at reducing wind noise: (1) a Hyperion high frequency (HF) shroud with a 1 m diameter metal mesh dome placed on top and (2) a Hyperion Four Port Garden Hose shroud with 4 Miracle-Gro Soaker System garden hoses. We also find that placing a 5-gallon bucket over the HF wind shroud should not be done as it provides a negligible decrease in noise up to ~ 1 Hz and then an increase in noise. We conclude that it is up to the researcher to determine which of the other filters is best for their needs based on location and expense. We anticipate this study will be used as a resource for future deployments when a wind noise reduction method is necessary but only needed for a limited time period.

58 GEOSCIENCES↗
DOE OSTI2020

On Aerosol Liquid Water and Sulfate Associations: The Potential for Fine Particulate Matter Biases

In humid locations of the Eastern U.S., sulfate is a surrogate for aerosol liquid water (ALW), a poorly measured particle constituent. Regional and seasonal variation in ALW–sulfate relationships offers a potential explanation to reconcile epidemiology and toxicology studies regarding particulate sulfur and health endpoints. ALW facilitates transfer of polar species from the gas phase to the particle phase and affects particle pH and metal oxidation state. Though abundant and a potential indicator of adverse health endpoints, ALW is largely removed in most particulate matter measurement techniques, including in routine particulate matter (PM 2.5 ) networks that use federal reference method (FRM) monitors, which are used in epidemiology studies. We find that in 2004, a typical year in the available record, ambient ALW mass is removed during sampling and filter equilibration to standard laboratory conditions at most (94%) sites, up to 85% of the ambient water mass. The removal of ALW can induce the evaporation of other semi-volatile compounds present in PM 2.5 , such as ammonium nitrate and numerous organics. This produces an artifact in the PM mass measurements that is, importantly, not uniform in space or time. This suggests that PM 2.5 epidemiology studies that exclude ALW are biased. This work provides a plausible explanation to resolve multi-decade discrepancies regarding ambient sulfate and health impacts in some epidemiological and toxicological studies

54 ENVIRONMENTAL SCIENCES↗
NASA NTRS1972

Nucleic acid hybridization with RNA immobilized on filter paper.

RNA has been immobilized in a manner suitable for use in molecular hybridization experiments with dissolved RNA or DNA by a nonaqueous solid-phase reaction with carbonyldiimidazole and RNA 'dry coated' on cellulose or, preferably, on previously activated phosphocellulose filters. Immobilization of RNA does not appear to alter its chemical character or cause it to acquire affinity for unspecific RNA or DNA. The versatility and efficiency of this method make it potentially attractive for use in routine analytical or preparative hybridization experiments, among other applications.

Saxinger, W. C.↗
NASA NTRS1979

Analytical aspects of Randomdec analysis

Relationships between Randomdec analysis and conventional methods of analysis such as Fourier and modal analysis are shown. The Randomdec signature is described in terms of the Fourier amplitude coefficients. Using this result, the effect of filtering the time history is shown. For a linear, two mode model, signatures are compared to the free response of the system subjected to different initial conditions to show the relationship of displacement and acceleration signatures to the physical system. Detection and location of flaws is also discussed.

Reed, R. E.↗
NASA NTRS1981

Estimation of trends

The application of statistical methods to recorded ozone measurements. The effects of a long term depletion of ozone at magnitudes predicted by the NAS is harmful to most forms of life. Empirical prewhitening filters the derivation of which is independent of the underlying physical mechanisms were analyzed. Statistical analysis performs a checks and balances effort. Time series filters variations into systematic and random parts, errors are uncorrelated, and significant phase lag dependencies are identified. The use of time series modeling to enhance the capability of detecting trends is discussed.

Source record↗
NASA NTRS1982

Terminal area automatic navigation, guidance, and control research using the Microwave Landing System (MLS). Part 2: RNAV/MLS transition problems for aircraft

The problems in navigation and guidance encountered by aircraft in the initial transition period in changing from distance measuring equipment, VORTAC, and barometric instruments to the more precise microwave landing system data type navaids in the terminal area are investigated. The effects of the resulting discontinuities on the estimates of position and velocity for both optimal (Kalman type navigation schemes) and fixed gain (complementary type) navigation filters, and the effects of the errors in cross track, track angle, and altitude on the guidance equation and control commands during the critical landing phase are discussed. A method is presented to remove the discontinuities from the navigation loop and to reconstruct an RNAV path designed to land the aircraft with minimal turns and altitude changes.

Pines, S.↗
NASA NTRS1983

A sea surface height estimator using synthetic aperture radar complex imagery

A method is developed for estimating the sea surface height using the complex imagery from synthetic aperture radar (SAR). Algorithms are developed for the envelope and phase demodulation, regression, and filtering of the SAR complex imagery and are applied to simulated and actual satellite radar SEASAT-SAR data. A simulation of a simplified stationary scene is utilized in order to establish tentative sufficient conditions on large-scale SAR and sampling parameters for the accurate estimation of the scale structure's height. It is shown that the algorithm accurately estimated a long wavelength low-amplitude sea height structure present in the SEASAT-SAR data, which was determined to be consistent with observations.

Harger, R. O.↗
NASA NTRS1984

MMIC devices for active phased array antennas

The study of printed circuit discontinuities is necessary in order to design, for example, transitions between rectangular waveguides and printed circuits. New developments with respect to the analytical approaches to this problem are discussed. A summary of the progress in the experimental approach is presented. The accurate solution for the modes in various millimeter-wave waveguides is essential in the analysis of many integrated circuit components, such as filters and impedance transformers. Problems associated with the numerical computation of these modes in two frequently used waveguide forms, namely, the finline and microstrip, are presented. The spectral domain method of formulation, with a moment method solution, is considered. This approach can be readily extended to analyze an arbitrary configuration of dielectric and metallized regions in a shielded enclosure. Galerkin's method is used, where the testing and basic functions are the same. It is shown that the mode functions, or eigenfunctions, are more sensitive to errors than the phase constants, or eigenvalues. The approximate mode functions do not satisfy the orthogonality relationship well, resulting in difficulties when these modal solutions are used to form an approximate Green's function or are used in a mode matching analysis.

Mittra, R.↗
NASA NTRS1985

The observed distribution of atmospheric ozone and its variations

It is pointed out that both the total amount and the vertical distribution of atmospheric ozone are presently measured routinely by various ground-based and satellite-borne instruments and by instruments mounted on different carrier platforms such as balloons, aircraft, and rockets. The techniques of observing atmospheric ozone are discussed, taking into account the determination of total ozone, the Dobson spectrophotometer, the Brewer spectrophotometer, the M-83 Filter Ozonometer, and satellite techniques. In a discussion of studies of vertical distribution, remote systems are considered along with in situ measurements. Attention is given to ground-based methods, satellite platforms, backscatter measurements, limb observations, electrochemical methods, chemiluminescent methods, optical methods, and rocket observations. A number of graphs showing the observed distribution of atmospheric ozone are also presented, and changes in this distribution are evaluated.

London, J.↗
NASA NTRS1996

LCTV Holographic Imaging

Astronauts are required to interface with complex systems that require sophisticated displays to communicate effectively. Lightweight, head-mounted real-time displays that present holographic images for comfortable viewing may be the ideal solution. We describe an implementation of a liquid crystal television (LCTV) as a spatial light modulator (SLM) for the display of holograms. The implementation required the solution of a complex set of problems. These include field calculations, determination of the LCTV-SLM complex transmittance characteristics and a precise knowledge of the signal mapping between the LCTV and frame grabbing board that controls it. Realizing the hologram is further complicated by the coupling that occurs between the phase and amplitude in the LCTV transmittance. A single drive signal (a gray level signal from a framegrabber) determines both amplitude and phase. Since they are not independently controllable (as is true in the ideal SLM) one must deal with the problem of optimizing (in some sense) the hologram based on this constraint. Solutions for the above problems have been found. An algorithm has been for field calculations that uses an efficient outer product formulation. Juday's MEDOF 7 (Minimum Euclidean Distance Optimal Filter) algorithm used for originally for filter calculations has been successfully adapted to handle metrics appropriate for holography. This has solved the problem of optimizing the hologram to the constraints imposed by coupling. Two laboratory methods have been developed for determining an accurate mapping of framegrabber pixels to LCTV pixels. A friendly software system has been developed that integrates the hologram calculation and realization process using a simple set of instructions. The computer code and all the laboratory measurement techniques determining SLM parameters have been proven with the production of a high quality test image.

Knopp, Jerome↗
NASA NTRS2006

Intracavity Rayleigh/Mie Scattering for Multipoint, Two-Component Velocity Measurement

A simultaneous multi-point two-component Doppler velocimeter is described. The system uses two optical cavities: a Fabry-Perot etalon and an optical cavity for collecting and re-circulating the Rayleigh/Mie scattered light that is collected from the measurement volume in two parallel, but opposite directions. Single-pulse measurements of two orthogonal components of the velocity vector in a supersonic free jet were performed to demonstrate the technique. The re-circulation of the light rejected by the interferometer input mirror also increased the signal intensity by a factor of 3.5. 2005 Optical Society of America Interferometric Rayleigh scattering has previously been used for single-point velocity measurements in unseeded gas flow. However, this past work has generally been limited to probing with continuous-wave lasers resulting in time-averaged measurements of velocity. Multiple velocity components have been measured simultaneously by separate instruments.1,2 It has also been demonstrated that two orthogonal velocity components can be measured simultaneously at one point using one interferometer by reflecting back the probing laser beam, although this approach results in directional ambiguity of the flow velocity vector.3 This measurement ambiguity was removed by prior knowledge of the approximate magnitude and sign of the velocity components. Furthermore, it was shown that multiple points could be measured simultaneously with a Rayleigh scattering interferometric approach, but only one component of velocity was measured.4 Another method of performing multiple component velocity measurements with Rayleigh scattering uses a pair of cameras to image the flow, one of which views the flow through an iodine gas filter. This iodine-filter technique has the advantage of allowing high-resolution velocity imaging, but it generally has a lower dynamic range.

Bivolaru, Daniel↗
NASA NTRS2010

Single sensor processing to obtain high resolution color component signals

A method for generating color video signals representative of color images of a scene includes the following steps: focusing light from the scene on an electronic image sensor via a filter having a tri-color filter pattern; producing, from outputs of the sensor, first and second relatively low resolution luminance signals; producing, from outputs of the sensor, a relatively high resolution luminance signal; producing, from a ratio of the relatively high resolution luminance signal to the first relatively low resolution luminance signal, a high band luminance component signal; producing, from outputs of the sensor, relatively low resolution color component signals; and combining each of the relatively low resolution color component signals with the high band luminance component signal to obtain relatively high resolution color component signals.

Glenn, William E.↗
NASA NTRS2016

Exploiting Measurement Uncertainty Estimation in Evaluation of GOES-R ABI Image Navigation Accuracy Using Image Registration Techniques

In evaluating GOES-R Advanced Baseline Imager (ABI) image navigation quality, upsampled sub-images of ABI images are translated against downsampled Landsat 8 images of localized, high contrast earth scenes to determine the translations in the East-West and North-South directions that provide maximum correlation. The native Landsat resolution is much finer than that of ABI, and Landsat navigation accuracy is much better than ABI required navigation accuracy and expected performance. Therefore, Landsat images are considered to provide ground truth for comparison with ABI images, and the translations of ABI sub-images that produce maximum correlation with Landsat localized images are interpreted as ABI navigation errors. The measured local navigation errors from registration of numerous sub-images with the Landsat images are averaged to provide a statistically reliable measurement of the overall navigation error of the ABI image. The dispersion of the local navigation errors is also of great interest, since ABI navigation requirements are specified as bounds on the 99.73rd percentile of the magnitudes of per pixel navigation errors. However, the measurement uncertainty inherent in the use of image registration techniques tends to broaden the dispersion in measured local navigation errors, masking the true navigation performance of the ABI system. We have devised a novel and simple method for estimating the magnitude of the measurement uncertainty in registration error for any pair of images of the same earth scene. We use these measurement uncertainty estimates to filter out the higher quality measurements of local navigation error for inclusion in statistics. In so doing, we substantially reduce the dispersion in measured local navigation errors, thereby better approximating the true navigation performance of the ABI system.

navigation performance↗
NASA NTRSDate not supplied

Distributed Sensing and Computer Vision Methods for Advanced Air Mobility Approach and Landing

Advanced Air Mobility (AAM) aircraft require precision approach and landing systems (PALS) in several types of environments such as urban, suburban, and rural. It is difficult to implement current state-of-the-art methods approved for automated approach and landing for AAM operations. However, existing technology and systems that use vision, IR, radar, and GPS methods provide baseline perception and sensing requirements for AAM aircraft approach and landing. This paper focuses on vision-based PAL and computer vision feature correspondence methods to demonstrate a baseline navigation system while adhering to the Federal Aviation Administration requirements and regulations. The coplanar algorithm determines pose estimation, which feeds into an Extended Kalman filter that combines IMU with vision to create a sensor fusion navigation solution for GPS-denied environments. The state estimate leads to glideslope and localizer error computations, which will be pertinent for designing and deriving guidance laws and control laws for AAM PALS. The IMU and vision navigation solution provides promising simulation results for AAM PALS. This paper builds on previous work by incorporating high fidelity simulations with computer graphics rendering to demonstrate a distributed sensor network to track an AAM aircraft during approach and landing to compare with the aircraft's onboard navigation solution.

Evan Kawamura↗
NASA NTRSDate not supplied

PACE OCI Short-Wave Infrared Detection Assembly frequency-dependent linearity characterization and uncertainty analysis

The Ocean Color Instrument (OCI), the primary payload of the Plankton, Aerosol, Cloud, ocean Ecosystem (PACE)observatory, will collect data to monitor the health of Earth’s oceans and atmosphere. The Short-Wave Infrared(SWIR) Detection Assembly (SDA) was built and characterized by the Utah State University Space DynamicsLaboratory (SDL) and is a subsystem of OCI. The SDA measures seven bands centered at 940, 1038, 1250, 1378,1615, 2130, and 2260 nm, with standard- and high-gain varieties for the 1250 and 1615 nm bands, resulting in nine total detection configurations in the SWIR. The delivery of high-quality science data is critically dependent upon accurately characterizing the linearity of the SDA. Two metrology techniques were employed to measure the linearity and characterize the frequency-dependent linearity uncertainty of the system. The first technique used superposition linearity measurements to determine the DC linearity, and the second technique involved an oscillating small-signal response at seven frequencies to determine the frequency-dependent linearity. Discrepancies between the DC and frequency-dependent linearities constrain the uncertainty between the two. Examining the difference between these two methods for all SDA channels, we find most channels experience an uncertainty below0.2% with a worst-case measurement uncertainty of 0.31%. Averaging SDA channels with similar detectors, optical filters, and electronics to simulate the flight-like data products yields a worst-case frequency-dependence linearity uncertainty of 0.12%, demonstrating minimal frequency dependence, implying an excellent linearity knowledge.Detailed performance knowledge, including linearity performance, verifies data quality and builds confidence in the success of the PACE mission.

PACE↗