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At least 1,747 records · Page 97

Calibration of hyperelastic constitutive models: the role of boundary conditions, search algorithms, and experimental variability

The calibration of hyperelastic constitutive models of soft tissue and tissue surrogates is often treated as an exercise in curve-fitting to the average experimental response, and many of the complicating factors such as experimental boundary conditions and data variability are ignored. Here, we focus on three questions that arise in this area: the ramifications of ignoring the experimental boundary conditions, the use of local optimizers, and the role of data variability. Using data from a uniaxial extension experiment on a tissue surrogate, we study how these three factors affect the calibration of isotropic hyperelastic constitutive models. Our results show that even with the simplest of constitutive models, it is necessary to look beyond a "good fit" to the average.

60 APPLIED LIFE SCIENCES↗

Triangulation of multistation camera data to locate a curved line in space

A method is described for finding the location of a curved line in space from local azimuth as a function of elevation data obtained at several observation sites. A least-squares criterion is used to insure the best fit to the data. The method is applicable to the triangulation of an object having no identifiable structural features, provided its width is very small compared with its length so as to approximate a line in space. The method was implemented with a digital computer program and was successfully applied to data obtained from photographs of a barium ion cloud which traced out the earth's magnetic field line at very high altitudes.

Fricke, C. L.↗

Species-specific ribosomal RNA-FISH identifies interspecies cellular-material exchange, active-cell population dynamics and cellular localization of translation machinery in clostridial cultures and co-cultures

ABSTRACT The development of synthetic microbial consortia in recent years has revealed that complex interspecies interactions, notably the exchange of cytoplasmic material, exist even among organisms that originate from different ecological niches. Although morphogenetic characteristics, viable RNA and protein dyes, and fluorescent reporter proteins have played an essential role in exploring such interactions, we hypothesized that ribosomal RNA-fluorescence in situ hybridization (rRNA-FISH) could be adapted and applied to further investigate interactions in synthetic or semisynthetic consortia. Despite its maturity, several challenges exist in using rRNA-FISH as a tool to quantify individual species population dynamics and interspecies interactions using high-throughput instrumentation such as flow cytometry. In this work, we resolve such challenges and apply rRNA-FISH to double and triple co-cultures of Clostridium acetobutylicum, Clostridium ljungdahlii, and Clostridium kluyveri . In pursuing our goal to capture each organism’s population dynamics, we demonstrate dynamic rRNA, and thus ribosome, exchange between the three species leading to the formation of hybrid cells. We also characterize the localization patterns of the translation machinery in the three species, identifying distinct, dynamic localization patterns among them. Our data also support the use of rRNA-FISH to assess the culture’s health and expansion potential, and, here again, our data find surprising differences among the three species examined. Taken together, our study argues for rRNA-FISH as a valuable and accessible tool for quantitative exploration of interspecies interactions, especially in organisms which cannot be genetically engineered or in consortia where selective pressures to maintain recombinant species cannot be used. IMPORTANCE Though dyes and fluorescent reporter proteins have played an essential role in identifying microbial species in co-cultures, we hypothesized that ribosomal RNA-fluorescence in situ hybridization (rRNA-FISH) could be adapted and applied to quantitatively probe complex interactions between organisms in synthetic consortia. Despite its maturity, several challenges existed before rRNA-FISH could be used to study Clostridium co-cultures of interest. First, species-specific probes for Clostridium acetobutylicum and Clostridium ljungdahlii had not been developed. Second, “state-of-the-art” labeling protocols were tedious and often resulted in sample loss. Third, it was unclear if FISH was compatible with existing fluorescent reporter proteins. We resolved these key challenges and applied the technique to co-cultures of C. acetobutylicum , C. ljungdahlii , and Clostridium kluyveri . We demonstrate that rRNA-FISH is capable of identifying rRNA/ribosome exchange between the three organisms and characterized rRNA localization patterns in each. In combination with flow cytometry, rRNA-FISH can capture sub-population dynamics in co-cultures.

Hill, John D.↗

Novel distribution of calreticulin to cardiomyocyte mitochondria and its increase in a rat model of dilated cardiomyopathy

Highlights: • Calreticulin can also be found in cardiomyocyte mitochondria. • The mitochondrial content of calreticulin is increased in DCM hearts. • Increased expression of mitochondrial CRT may induce mitochondrial damage. • Mitochondrial CRT may inhibit the phosphorylation of mitochondrial STAT3. - Abstract: Background: Calreticulin (CRT), a Ca{sup 2+}-binding chaperone of the endoplasmic reticulum, can also be found in several other locations including the cytosol, nucleus, secretory granules, the outer side of the plasma membrane, and the extracellular matrix. Whether CRT is localized at mitochondria of cardiomyocytes and whether such localization is affected under DCM are still unclear. Methods and results: The DCM model was generated in rats by the daily oral administration of furazolidone for thirty weeks. Echocardiographic and hemodynamic studies demonstrated enlarged left ventricular dimensions and reduced systolic and diastolic function in DCM rats. Immuno-electron microscopy and Western blot showed that CRT was present in cardiomyocyte mitochondria and the mitochondrial content of CRT was increased in DCM hearts (P < 0.05). Morphometric analysis showed notable myocardial apoptosis and mitochondrial swelling with fractured or dissolved cristae in the DCM hearts. Compared with the control group, the mitochondrial membrane potential level of the freshly isolated cardiac mitochondria and the enzyme activities of cytochrome c oxidase and succinate dehydrogenase in the model group were significantly decreased (P < 0.05), and the myocardial apoptosis index and the caspase activities of caspase-9 and caspase-3 were significantly increased (P < 0.05). Pearson linear correlation analysis showed that the mitochondrial content of CRT had negative correlations with the mitochondrial function, and a positive correlation with myocardial apoptosis index (P < 0.001). The protein expression level of cytochrome c and the phosphorylation activity of STAT3 in the mitochondrial fraction were significantly decreased in the model group compared with the control group (P < 0.05). Conclusions: These data demonstrate that CRT is localized at cardiomyocyte mitochondria and its mitochondrial content is increased in DCM hearts.

60 APPLIED LIFE SCIENCES↗

FERMI LAT STACKING ANALYSIS OF SWIFT LOCALIZED GRBs

We perform a comprehensive stacking analysis of data collected by the Fermi Large Area Telescope (LAT) of γ -ray bursts (GRBs) localized by the Swift spacecraft, which were not detected by the LAT but which fell within the instrument’s field of view at the time of trigger. We examine a total of 79 GRBs by comparing the observed counts over a range of time intervals to that expected from designated background orbits, as well as by using a joint likelihood technique to model the expected distribution of stacked counts. We find strong evidence for subthreshold emission at MeV to GeV energies using both techniques. This observed excess is detected during intervals that include and exceed the durations typically characterizing the prompt emission observed at keV energies and lasts at least 2700 s after the co-aligned burst trigger. By utilizing a novel cumulative likelihood analysis, we find that although a burst’s prompt γ -ray and afterglow X-ray flux both correlate with the strength of the subthreshold emission, the X-ray afterglow flux measured by Swift ’ s X-ray Telescope at 11 hr post trigger correlates far more significantly. Overall, the extended nature of the subthreshold emission and its connection to the burst’s afterglow brightness lend further support to the external forward shock origin of the late-time emission detected by the LAT. These results suggest that the extended high-energy emission observed by the LAT may be a relatively common feature but remains undetected in a majority of bursts owing to instrumental threshold effects.

79 ASTRONOMY AND ASTROPHYSICS↗

The Use of Mascons to Resolve Time-Variable Gravity from GRACE

We have analyzed GRACE Level 1B data to resolve time-variable gravity using a local mascon approach. The spherical harmonic solutions released to date resolve the signal from surface hydrology over land areas at spatial scales of 750 to 1000 km over one month intervals [Wahr et al., 2004; Tapley et al., 2004]. In our local approach, we solve explicitly for the mass of water in surface blocks using only the KBRR data collected as GRACE overflies the region of interest. The local representation of gravity minimizes leakage of errors from other areas due to aliasing or mismodelling. In this paper, we report on the analysis of GRACE data from January 2003 through August 2004 over three regions: the Amazon, the Indian subcontinent, and the continental United States. We solve for mass change at 10-day intervals using 4 deg x 4 deg blocks. We give an overview of our latest results, and we present the results of error analyses, and comparisons to both hydrology models and in-situ data.

Lemoine, Frank G.↗

Revealing Local Structures through Machine-Learning-Fused Multimodal Spectroscopy

Atomistic structures of materials offer valuable insights into their functionality. Determining these structures remains a fundamental challenge in materials science, especially for systems with defects. While both experimental and computational methods exist, each has limitations in resolving nanoscale structures. Core-level spectroscopies, such as X-ray absorption (XAS) or electron energy-loss spectroscopies (EELS), have been used to determine the local bonding environment and structure of materials. Recently, machine learning (ML) methods have been applied to extract structural and bonding information from XAS/EELS data. However, frameworks relying solely on a single data stream, defined as characterization data derived from a single element using one technique, are often insufficient because multiple local environments can yield similar spectral features, making it challenging to differentiate between competing structural hypotheses. Here, in this work, we address this challenge by integrating multimodal ab initio simulations, experimental data acquisition, and ML techniques for structure characterization. Our goal is to determine local structures and properties using EELS and XAS data from multiple elements and edges. To showcase our approach, we use various lithium nickel manganese cobalt (NMC) oxide compounds which are used for lithium ion batteries, including those with oxygen vacancies and antisite defects, as the sample material system. We successfully inferred local element content, ranging from lithium to transition metals, with quantitative agreement with experimental data. Beyond local element inference, we find that ML model based on multimodal spectroscopic data is able to determine whether local defects such as oxygen vacancy and antisites are present, a task which is impossible for single mode spectra or other experimental techniques. Furthermore, our framework is able to provide physical interpretability, bridging spectroscopy with the local atomic and electronic structures.

battery↗

A global model of the neutral thermosphere in magnetic coordinates based on AE-C data

Molecular nitrogen, atomic oxygen, and helium densities obtained from the AE-C satellite are analyzed in magnetic latitude and magnetic local time coordinates and compared to OGO 6 data for various seasons and magnetic activity levels. A depletion region for atomic oxygen and helium with respect to molecular nitrogen at high magnetic latitudes in the postmidnight magnetic local time sector persists under both high and low solar activity conditions. A global model in magnetic coordinates, patterned after the mass spectrometer and incoherent scatter (MSIS) model, is developed for molecular nitrogen, atomic oxygen, and helium. It is shown to represent the data well, without any residual UT dependence, and with an accuracy comparable to that provided by the more complex MSIS model with longitude terms The advantage of using magnetic coordinates is that they are more directly related to the major energy inputs and momentum sources in the polar regions than are geographic coordinates and are more convenient to use in studies of high latitude energy deposition processes. This is important for comparison with theoretical models where the number of coordinates is limited.

Stehle, C. G.↗

Locally-Based Kernal PLS Smoothing to Non-Parametric Regression Curve Fitting

We present a novel smoothing approach to non-parametric regression curve fitting. This is based on kernel partial least squares (PLS) regression in reproducing kernel Hilbert space. It is our concern to apply the methodology for smoothing experimental data where some level of knowledge about the approximate shape, local inhomogeneities or points where the desired function changes its curvature is known a priori or can be derived based on the observed noisy data. We propose locally-based kernel PLS regression that extends the previous kernel PLS methodology by incorporating this knowledge. We compare our approach with existing smoothing splines, hybrid adaptive splines and wavelet shrinkage techniques on two generated data sets.

Rosipal, Roman↗

U-net architected deep material network training with microstructure local field information

The Deep Material Network (DMN) has recently emerged as a powerful reduced-order modeling framework for simulating the mechanical response of heterogeneous materials such as composites. Unlike most data-driven approaches that directly learn a material’s response under prescribed loading, the DMN acts as a homogenization operator, learning the kinematic constraints and mechanical interactions of the underlying microstructure. However, traditional DMN training relies exclusively on homogenized effective properties derived from Direct Numerical Simulations (DNS), discarding the rich local field data that govern microstructural interactions. In this work, we extend the DMN framework to incorporate such local field information into the offline training process. Utilizing a U-Net architecture, we augment the DMN training objective to include the first and second statistical moments of the local stress fields obtained from linear DNS. This ensures that the learned network topology not only fits the effective stiffness but also accurately reflects the internal local stress and strain partitioning of the microstructure. The results confirm that supervising the localization process during training yields a superior surrogate model, reducing local prediction errors by an order of magnitude and significantly improving generalization to unseen nonlinear constitutive behaviors compared to traditional DMNs.

36 MATERIALS SCIENCE↗

Integrated High-Speed Torque Control System for a Robotic Joint

A control system for achieving high-speed torque for a joint of a robot includes a printed circuit board assembly (PCBA) having a collocated joint processor and high-speed communication bus. The PCBA may also include a power inverter module (PIM) and local sensor conditioning electronics (SCE) for processing sensor data from one or more motor position sensors. Torque control of a motor of the joint is provided via the PCBA as a high-speed torque loop. Each joint processor may be embedded within or collocated with the robotic joint being controlled. Collocation of the joint processor, PIM, and high-speed bus may increase noise immunity of the control system, and the localized processing of sensor data from the joint motor at the joint level may minimize bus cabling to and from each control node. The joint processor may include a field programmable gate array (FPGA).

Davis, Donald R.↗

Adaptive Online Multivariate Signal Extraction With Locally Weighted Robust Polynomial Regression

High-frequency, multivariate data collected in real-time and used to control or make decisions regarding a process’ operation often contain some noise and outliers. Thus, a method to extract the signal is needed in order to reduce the number and magnitude of control-based adjustments that are implemented. Such a method must be (i) online, depending only on past and current observations; (ii) fast, producing a smooth value more quickly than the measurement frequency; (iii) robust, ignoring brief bursts of erroneously measured values; (iv) multivariate, ignoring observations that are jointly unusual; (v) adaptive, adjusting to periods of rapid fluctuation in the signal versus periods of stability; and (vi) purely data-driven, not incorporating any information about the process from which the data are collected. Most existing methods are only able to address a subset of these six features. Furthermore, we also require the method to be nonlinear, providing a local nonlinear estimate of the signal. In this work, we propose a novel, real-time signal extraction method based on a local, robust polynomial fit. We demonstrate the performance of our method compared to a state-of-the-art competitor through simulation. For illustration, the methodology is applied to data collected from a reverse osmosis water treatment process.

97 MATHEMATICS AND COMPUTING↗

Folsom Mammoth Hunters? The Terminal Pleistocene Assemblage From Owl Cave (10BV30), Wasden Site, Idaho

The 1960s and 1970s excavations at Owl Cave (10BV30) recovered mammoth bone and Folsom-like points from the same strata, suggesting evidence for a post-Clovis mammoth kill. However, a synthesis of the excavation data was never published, and the locality has since been purged from the roster of sites with human/extinct megafauna associations. In this paper, we present dates on bone from the oldest stratum, review provenience data, conduct a bone-surface modification study, and present the results of a protein-residue analysis. Our study fails to make the case for mammoth hunting by Folsom peoples. Although two of the point fragments tested positive for horse or elephant protein, recent AMS dates indicate that all of the mammoth remains predate Folsom, and horse remains are absent from the Owl Cave collection. Further, no unambiguously cultural surface modifications were identified on any of the mammoth remains. Given the available data, the Owl Cave deposits are most parsimoniously read as containing a Folsom-age occupation in a buried context, the first of its kind in the desert West, but one nonetheless part of a palimpsest of terminal Pleistocene materials.

99 GENERAL AND MISCELLANEOUS↗

Relationship between ATS-6 spacecraft-charging occurrences and warm plasma encounters

The occurrences in local time of spacecraft-charging and warm plasma events observed by the University of California at San Diego plasma detector on ATS-6 have been examined using data from 40 contiguous orbits. The local time distribution of charging events was found to maximize between local midnight and dawn and was also similar to the distribution of synchronous spacecraft anomalies reported by others. More than half of the charging events had potentials of -50 V or more, and potentials on the order of -1000 V were observed. All of the spacecraft charging events reported in this paper occurred during sunlit conditions. The warm plasma encounters were concentrated in the local noon-to-dusk sector, and the local-time distributions of charging events and warm plasma encounters were found to be anticorrelated.

Reasoner, D. L.↗

Water vapor in the Martian atmosphere - A discussion of the Viking data

A summary of calculations describing the Martian atmosphere water vapor content based on data from the Mars Atmospheric Water Detectors carried by the Viking landers is presented. The water column has been observed to vary with season, time of day, and locality. Over 5 yr of continuous data collection has permitted modeling of the Martian year into 24 seasonal periods of planetocentric solar longitude, with gaps in the model due to the presence of dust storms. The vapor content is asymmetric pole-to-pole, but symmetric latitudinally with respect to the equator. Low elevation areas display a higher vapor content, especially with rapid height changes in nearby terrain. Dust storms reduced the total atmospheric vapor, with concentration shifts tending toward the north, from where it is expected renewed balances will be reinstated. Consideration is also given to diurnal variations, and variations due to temperature, composition, and wind velocity.

Doms, P. E.↗

A Global Model for Estimating Atmospheric Phase Scintillation Statistics

Since 2007, the National Aeronautics and Space Administration (NASA) has been collecting atmospheric phase turbulence data from various NASA ground stations throughout the world. The goal of these measurement campaigns has been to generate statistics to characterize the local site turbulence conditions and their impact on widely distributed ground based antenna arrays. This is of critical importance for the situation of uplink arraying, in which a priori knowledge of the fast varying turbulent conditions of water vapor in the troposphere may not be known, and will impact the power combining efficiency of ground based transmitting arrays. Therefore, the design of these type of systems will be dependent on the local climatology of the particular ground station site. Based on the 30+ station years of data collected characterizing atmospheric phase scintillation statistics at various sites, a global model is presented which attempts to predict the average phase statistics of a generic site based on local surface weather data, such as surface pressure, temperature, relative humidity, wind speed, and median wind direction. A model is proposed and based on a standard log power distribution similar to amplitude scintillation models trained on the existing data sets and shows reasonable accuracy against existing data sets.

propagation↗

Time-continuous assimilation of remote-sounding data and its effect on weather forecasting

Methods were developed for the time-continuous assimilation of satellite-sounding temperature data: direct insertion method, asynoptic successive correction method, and local linear regression method. These methods were applied to DST-6 data from the operational and experimental temperature sounders aboard the NOAA 4 and Nimbus 6 satellites. Attention is given to a comparison of these methods and their effect on the accuracy of the initial states obtained, as well as the resulting forecasts generated from these initial states. The results suggest that (1) satellite-derived temperature data can have a modest though statistically significant positive impact on numerical weather prediction in the 2-3 day range; (2) the impact is highly sensitive to the quantity of data available; and (3) the method of satellite-data assimilation can substantially influence the magnitude of the impact obtained for the same data.

Ghil, M.↗