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At least 1,747 records · Page 97

Sequential computation of elementary modes and minimal cut sets in genome-scale metabolic networks using alternate integer linear programming

Elementary (flux) modes (EMs) have served as a valuable tool for investigating structural and functional properties of metabolic networks. Identification of the full set of EMs in genome-scale networks remains challenging due to combinatorial explosion of EMs in complex networks. It is often, however, that only a small subset of relevant EMs needs to be known, for which optimization-based sequential computation is a useful alternative. Most of the currently available methods along this line are based on the iterative use of mixed integer linear programming (MILP), the effectiveness of which significantly deteriorates as the number of iterations builds up. To alleviate the computational burden associated with the MILP implementation, we here present a novel optimization algorithm termed alternate integer linear programming (AILP). Results: Our algorithm was designed to iteratively solve a pair of integer programming (IP) and linear programming (LP) to compute EMs in a sequential manner. In each step, the IP identifies a minimal subset of reactions, the deletion of which disables all previously identified EMs. Thus, a subsequent LP solution subject to this reaction deletion constraint becomes a distinct EM. In cases where no feasible LP solution is available, IP-derived reaction deletion sets represent minimal cut sets (MCSs). Despite the additional computation of MCSs, AILP achieved significant time reduction in computing EMs by orders of magnitude. The proposed AILP algorithm not only offers a computational advantage in the EM analysis of genome-scale networks, but also improves the understanding of the linkage between EMs and MCSs.

59 BASIC BIOLOGICAL SCIENCES↗

Towards Reconstruction of Complex Flow Fields Using Unit Flows

Many complex turbulent flows in nature and engineering can be qualitatively regarded as being constituted of multiple simpler unit flows. The objective of this work is to characterize the coherent structures in such complex flows as a combination of constituent unitary flow structures for the purpose of reduced-order representation. While turbulence is clearly a non-linear phenomenon, we aim to establish the degree to which the optimally weighted superposition of unitary flow structures can represent the complex flow structures. The rationale for investigating such superposition stems from the fact that the large-scale coherent structures are generated by underlying flow instabilities that may be reasonably described using linear analysis. Clearly, the degree of validity of superposition will depend on the flow under consideration. In this work, we take the first step toward establishing a procedure for investigating superposition. Experimental data of single and triple tandem jets in crossflow are used to demonstrate the procedure. A composite triple tandem jet flow field is generated from optimal superposition of single jet data and compared against ‘true’ triple jet data. Direct comparisons between the true and composite fields are made for spatial, temporal, and kinetic energy content. The large-scale features (obtained from proper orthogonal decomposition or POD) of true and composite tandem jet wakes exhibit nearly 70% agreement in terms of modal eigenvector correlation. Corresponding eigenvalues reveal that the kinetic energy of the flow is also emulated with only a slight overprediction. Temporal frequency features are also examined in an effort to completely characterize POD modes. The proposed method serves as a foundation for more rigorous and robust dimensional reduction in complex flows based on unit flow modes.

Kristo, Paul J.↗

The primer vector in linear, relative-motion equations

Primer vector theory is used in analyzing a set of linear, relative-motion equations - the Clohessy-Wiltshire equations - to determine the criteria and necessary conditions for an optimal, N-impulse trajectory. Since the state vector for these equations is defined in terms of a linear system of ordinary differential equations, all fundamental relations defining the solution of the state and costate equations, and the necessary conditions for optimality, can be expressed in terms of elementary functions. The analysis develops the analytical criteria for improving a solution by (1) moving any dependent or independent variable in the initial and/or final orbit, and (2) adding intermediate impulses. If these criteria are violated, the theory establishes a sufficient number of analytical equations. The subsequent satisfaction of these equations will result in the optimal position vectors and times of an N-impulse trajectory. The solution is examined for the specific boundary conditions of (1) fixed-end conditions, two-impulse, and time-open transfer; (2) an orbit-to-orbit transfer; and (3) a generalized rendezvous problem. A sequence of rendezvous problems is solved to illustrate the analysis and the computational procedure.

Source record↗

AESOP: A computer-aided design program for linear multivariable control systems

An interactive computer program (AESOP) which solves quadratic optimal control and is discussed. The program can also be used to perform system analysis calculations such as transient and frequency responses, controllability, observability, etc., in support of the control and filter design computations.

Lehtinen, B.↗

LENS: Learning Enabled Network Synthesis

RTRC and UMD have developed novel machine learning based methods under the ARPA-E DIFFERENTIATE program for rapid acceleration of hypothesis generation in complex architecture design spaces involving both discrete choices of component inclusion and interconnection and continuous parametric decisions. The project named Learning Enabled Network Synthesis (LENS) further demonstrated the developed methods on challenging electrical power converter design problems by identifying the most suitable circuit topologies and simultaneously selecting the most appropriate components to achieve optimized design of power converter with improved performances. We demonstrated that LENS could enable exploration of very large design space of circuit topologies and components by addressing the limitations of conventional design process in non-linear, high switching speed, multi-dimensional power converter design and optimization. The key innovation developed in LENS is the seamless integration of statistical learning and logical reasoning techniques and building on the individual strengths of these techniques for rapid hypothesis discovery. The main component of LENS comprises of: 1) Graph Reasoning Engine (GRE) to enforce composition rules that rapidly reject all discrete architectures that are composed incorrectly and generates an adaptive database of feasible designs which can be used by ML modules, 2) Graph Generative Learning module which is a deep neural network based generative model for graph architectures which can enable design space exploration beyond the dataset generated by the GRE, 3) Graph Reduced Order Model (ROM) for graph domains for accelerating computation of output metrics, and 4) Active learning and Rule Discovery module for sample efficient learning and extracting logical rules from the learned ML models which will be integrated in the GRE to enhance the filtering effectiveness. LENS approach can be applied to any design domains where designs can be represented as multi-attribute graphs. The LENS team integrated the various technical innovations listed above into an optimization pipeline and exercised the optimization pipeline on the converter design problem. The LENS project demonstrated that the developed AI/ML technologies can be used to generate novel converter circuits >45x faster than experts on chosen use-cases. This can enable faster design space exploration and identification of new designs which are not considered by experts due to the increasing design space complexity. This has significant potential impact on the public and energy needs of the country. It is currently estimated that 30% of all electrical powers generated passes through power converters. The future estimate is that 80% of all power generated would be passing through converters. LENS fills a critical gap in this space since by accelerating the design process the designers would be able to generate more efficient converters which can lead to significant energy savings for the country.

42 ENGINEERING↗

Power System Recovery Coordinated with (Non-)Black-Start Generators

Power restoration is an urgent task after a black-out, and recovery efficiency is critical when quantifying system resilience. Multiple elements should be considered to restore the power system quickly and safely. This paper proposes a recovery model to solve a direct-current optimal power flow (DCOPF) based on mixed-integer linear programming (MILP). Since most of the generators cannot start independently, the interaction between black-start (BS) and non-black-start (NBS) generators must be modeled appropriately. The energization status of the NBS is coordinated with the recovery status of transmission lines, and both of them are modeled as binary variables. Also, only after an NBS unit receives the cranking power through connected transmission lines, will it be allowed to participate in the following system dispatch. The amount of cranking power is estimated as a fixed proportion to the maximum generation capacity. The proposed model is validated on several test systems, as well as a 1393-bus representation system of the Puerto Rican electric power grid. Test results demonstrate how the recovery of NBS units and damaged transmission lines can be optimized, resulting in an efficient and well-coordinated recovery procedure.

Zhao, Meng↗

Multi-amplifier Sensing Charge-coupled Devices for Next Generation Spectroscopy

We present characterization results and performance of a prototype Multiple-Amplifier Sensing (MAS) silicon charge-coupled device (CCD) sensor with 16 channels potentially suitable for faint object astronomical spectroscopy and low-signal, photon-limited imaging. The MAS CCD is designed to reach sub-electron readout noise by repeatedly measuring charge through a line of amplifiers during the serial transfer shifts. Using synchronized readout electronics based on the Dark Energy Spectroscopic Instrument CCD controller, we report a read noise of 1.03 e$^{−}$ rms pix$^{−1}$ at a speed of 26 μs pix$^{−1}$ with a single-sample readout scheme where charge in a pixel is measured only once for each output stage. At these operating parameters, we find the amplifier-to-amplifier charge transfer efficiency (ACTE) to be >0.9995 at low counts for all amplifiers but one for which the ACTE is 0.997. This charge transfer efficiency falls above 50,000 electrons for the read-noise optimized voltage configuration we chose for the serial clocks and gates. The amplifier linearity across a broad dynamic range from ∼300 to 35,000 e$^{−}$ was also measured to be ±2.5%. We describe key operating parameters to optimize on these characteristics and describe the specific applications for which the MAS CCD may be a suitable detector candidate.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Linear Approximation Line Pack Model for Integrated Electricity and Natural Gas Systems OPF

With the increasing installation of renewable energy electricity generation capacity, the penetration of natural gas fired generation is also substantailly increasing in power systems due to their fast response capability to mitigate system variability and uncertainty. The dependencies between the electricity system and the natural gas system are becoming more important to maintain the reliability of both systems. In integrated electricity and natural gas systems (IEGSs) operations, the nonlinearity of the natural gas system brings challenges to the system operators. In this paper, the IEGSs optimal power flow (OPF) model is proposed that includes the line pack of the gas system via linear approximation. The simulation results demonstrate that the proposed model can obtain optimal solutions efficiently that are comparable in accuracy as the nonlinear line pack model.

24 POWER TRANSMISSION AND DISTRIBUTION↗

Exploiting Identical Generators in Unit Commitment

Here, we present sufficient conditions under which thermal generators can be aggregated in mixed-integer linear programming (MILP) formulations of the unit commitment (UC) problem, while maintaining feasibility and optimality for the original disaggregated problem. Aggregating thermal generators with identical characteristics (e.g., minimum/maximum power output, minimum up/down-time, and cost curves) into a single unit reduces redundancy in the search space induced by both exact symmetry (permutations of generator schedules) and certain classes of mutually non-dominated solutions. We study the impact of aggregation on two large-scale UC instances, one from the academic literature and another based on real-world operator data. Our computational tests demonstrate that when present, identical generators can negatively affect the performance of modern MILP solvers on UC formulations. Further, we show that our reformation of the UC MILP through aggregation is an effective method for mitigating this source of computational difficulty.

97 MATHEMATICS AND COMPUTING↗

Potential Economic Values of Low-Vapor-Pressure Gasoline-Range Bio-Blendstocks: Property Estimation, and Blending Optimization

Adding non-traditional blendstocks derived from biomass into gasoline has gained renewed interest since it will reduce greenhouse gas emissions and potentially enhance fuel properties and boost engine efficiencies. A competitive bio-blendstock candidate should have either lower prices or superior properties or both relative to conventional gasoline blending components. Gasoline is a mixture of hundreds compounds specified by properties rather than compositions. The addition of bio-blendstocks, most likely oxygenates, will modify the property mixing rules due to the non-ideal interactions between polar and nonpolar components. This paper presents an equation-of-state-based model for predicting Reid vapor pressure, reduced order non-linear property blending models for computing key properties of final gasoline products, and a blending optimization approach to identify key economic drivers. This paper also evaluates the economic values of bio-blendstocks to petroleum refiners using those models. In additional to ethanol, six low-vapor-pressure bio-blendstock candidates were evaluated: i-propanol, n-propanol, i-butanol, diisobutylene, cyclopentanone, and a mixture of furans. Reid vapor pressure, distillation temperatures, and octane numbers were identified as the key economic drivers of adding bio-blendstock. The economic values of those bio-blendstocks range from 2.22 to 4.00 US dollar per gasoline gallon equivalent in 2013 to 2017 5-year averaged price basis. The bio-blendstocks with higher octane numbers may have higher economic values. The uncertainties in property predictions may lead to roughly 15% deviation in the economic value evaluation.

Jiang, Yuan↗

Evaluation of glide paths for landing a VTOL airplane using linear regulator theory.

A method of evaluating certain characteristics of approach paths for VTOL airplanes is presented which is based on the solution of the matrix Riccati equation to obtain an optimal state variable feedback controller. The longitudinal equations of motion of the airplane are linearized about a preselected path and the resulting system of equations is treated as a linear, time-varying regulator. The controller which minimizes a quadratic cost function is applied to the linearized system to determine the airplane's ability to return to the prescribed path given a specified initial error in altitude. The procedure is applied to the XC-142A, tilt-wing, V/STOL airplane, under decelerating approach conditions with a glide path consisting of two segments, the first having a smaller angle of descent than the second.

Reid, G. F.↗

On the design of optimal input signals in system identification

The problem of designing optimal inputs in the identification of multi-input multi-output linear systems with unknown time-varying parameters is considered using a Bayesian approach. A sensitivity index gives a measure of performance for the closed-loop system inputs. The computation of the optimal closed-loop mappings is shown to be a nontrivial exercise in stochastic control with no analytic solution, but optimal open-loop and affine laws yield much more tractable problems. For time-invariant systems, the sensitivity index considered is shown to be equivalent to the trace of the (strictly positive definite) information matrix associated with the system. Numerical examples are given. A Kalman filter is used to estimate the parameters. A necessary condition for the Kalman filter not to diverge when applying linear feedback is also given.

Lopez-Toledo, A. A.↗

Multimodal parameter spaces of a complex multi-channel neuron model

One of the most common types of models that helps us to understand neuron behavior is based on the Hodgkin–Huxley ion channel formulation (HH model). A major challenge with inferring parameters in HH models is non-uniqueness: many different sets of ion channel parameter values produce similar outputs for the same input stimulus. Such phenomena result in an objective function that exhibits multiple modes (i.e., multiple local minima). This non-uniqueness of local optimality poses challenges for parameter estimation with many algorithmic optimization techniques. HH models additionally have severe non-linearities resulting in further challenges for inferring parameters in an algorithmic fashion. To address these challenges with a tractable method in high-dimensional parameter spaces, we propose using a particular Markov chain Monte Carlo (MCMC) algorithm, which has the advantage of inferring parameters in a Bayesian framework. The Bayesian approach is designed to be suitable for multimodal solutions to inverse problems. We introduce and demonstrate the method using a three-channel HH model. We then focus on the inference of nine parameters in an eight-channel HH model, which we analyze in detail. We explore how the MCMC algorithm can uncover complex relationships between inferred parameters using five injected current levels. The MCMC method provides as a result a nine-dimensional posterior distribution, which we analyze visually with solution maps or landscapes of the possible parameter sets. The visualized solution maps show new complex structures of the multimodal posteriors, and they allow for selection of locally and globally optimal value sets, and they visually expose parameter sensitivities and regions of higher model robustness. We envision these solution maps as enabling experimentalists to improve the design of future experiments, increase scientific productivity and improve on model structure and ideation when the MCMC algorithm is applied to experimental data.

97 MATHEMATICS AND COMPUTING↗

SU-E-T-100: An Approach to Improving the Dynamic Delivery Accuracy for Breast IMRT

Purpose: A method is established to improve the accuracy of the IMRT dose delivery for the treatment of breast and chest wall tumors when the higher dose gradient is delivered at the end of the leaf sequence. Methods: Dynamic MLC deliveries on Varian Linacs are achieved through the motion of the leaves from X1 to X2 direction. If the higher dose gradient is at the end of the leaf motion sequence, this can Result in an increased error in the overall dose delivery. Such errors have been observed in Lateral beams for Left-sided and Medial beams for Right-sided treatments. To evaluate and resolve this issue we adopted an approach where the fluence for such beams was geometrically flipped (mirrored) to treat the higher end of the dose gradient first. Results: Using this method, it was possible to deliver the optimized dose map to the area of interest still using only the X1–X2 direction of the leaf motion. The accuracy of this method was tested on different beam as part of our pre-treatment QA program on both Varian delivery systems. With this approach we found that there was significant improvement in delivery accuracy on both 21EX and TrueBeam systems. Beams of initial Gamma index (3% and 3mm) 89–93% were increased to 98–99%. We also observed superior delivery accuracy with TB compared to the 21EX Conclusion: This work demonstrate the need for a delivery sequence option from X2–X1 in situations where the MLC sequence indicates higher dose gradient component is being delivered at the end of the sequence. Results from this work can be considered in the IMRT beam optimization in the treatment planning systems. Further work will be required to establish the application of this approach in clinical setting.

60 APPLIED LIFE SCIENCES↗

Optimal control of wave energy converters

Optimal control theory is applied to compute control for a single-degree-of-freedom heave wave energy converter. The goal is to maximize the energy extraction per cycle. Both constrained and unconstrained optimal control problems are presented. Both periodic and non-periodic excitation forces are considered. In contrast to prior work, it is shown that for this non-autonomous system, the optimal control, in general, includes both singular arc and bang-bang modes. Conditions that determine the switching times to/from the singular arc are derived. Simulation results show that the proposed optimal control solution matches the solution obtained using the complex conjugate control. A generic linear dynamic model is used in the simulations. In conclusion, the main advantage of the proposed control is that it finds the optimal control without the need for wave prediction; it only requires the knowledge of the excitation force and its derivatives at the current time.

16 TIDAL AND WAVE POWER↗

Nonlinear control of a supermaneuverable aircraft

This paper describes a technique which may be used to design the flight control system for a highly maneuverable aircraft. The control system was provided to stabilize the dynamics of the aircraft model and allow it to fly simulated, poststall 'supermaneuvers'. Although the aircraft dynamics are highly nonlinear under these conditions, the gain-scheduled, flight control system was designed using basically linear techniques. A manuever generator was implemented to pilot the mathematical model through prescribed optimal trajectories. The control system design performed well while executing maneuvers involving small angular rates where the governing dynamics could be considered linear. However, the performance deteriorated once the model was subjected to high angular rates at high angle of attack.

Snell, S. Antony↗

Daubechies wavelets for linear scaling density functional theory

We demonstrate that Daubechies wavelets can be used to construct a minimal set of optimized localized adaptively contracted basis functions in which the Kohn-Sham orbitals can be represented with an arbitrarily high, controllable precision. Ground state energies and the forces acting on the ions can be calculated in this basis with the same accuracy as if they were calculated directly in a Daubechies wavelets basis, provided that the amplitude of these adaptively contracted basis functions is sufficiently small on the surface of the localization region, which is guaranteed by the optimization procedure described in this work. This approach reduces the computational costs of density functional theory calculations, and can be combined with sparse matrix algebra to obtain linear scaling with respect to the number of electrons in the system. Calculations on systems of 10 000 atoms or more thus become feasible in a systematic basis set with moderate computational resources. Further computational savings can be achieved by exploiting the similarity of the adaptively contracted basis functions for closely related environments, e.g., in geometry optimizations or combined calculations of neutral and charged systems.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗