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At least 1,747 records · Page 97

Agulhas Current Properties Shape Microbial Community Diversity and Potential Functionality

Understanding the impact of oceanographic features on marine microbial ecosystems remains a major ecological endeavour. Here we assess microbial diversity, community structure and functional capacity along the Agulhas current system and the Subtropical convergence in the South Indian Ocean (SIO). Samples collected from the epipelagic, oxygen minimum and bathypelagic zones were analysed by 16S rRNA gene amplicon and metagenomic sequencing. In contrast to previous studies, we found high taxonomic richness in surface and deep water samples, but generally low richness for oxygen minimum zone communities. Beta-diversity analysis revealed significant dissimilarity between the three water depths. Most microbial communities were dominated by marine Gammaproteobacteria, with strikingly low levels of picocyanobacteria. Community composition was strongly influenced by specific environmental factors including depth, salinity, and the availability of both oxygen and light. Carbon, nitrogen and sulphur cycling capacity is the SIO was linked to several autotrophic and copiotrophic Alphaproteobacteria and Gammaproteobacteria. Taken together, our data suggest that the environmental conditions in the Agulhas current system, particularly depth-related parameters, substantially influence microbial community structure. While the capacity for biogeochemical cycling of nitrogen and sulphur is linked primarily by the dominant Gammaproteobacterial taxa, ecologically rare taxa drive carbon cycling.

59 BASIC BIOLOGICAL SCIENCES↗

Verification of BOUT++ by the method of manufactured solutions

BOUT++ is a software package designed for solving plasma fluid models. It has been used to simulate a wide range of plasma phenomena ranging from linear stability analysis to 3D plasma turbulence and is capable of simulating a wide range of drift-reduced plasma fluid and gyro-fluid models. A verification exercise has been performed as part of a EUROfusion Enabling Research project, to rigorously test the correctness of the algorithms implemented in BOUT++, by testing order-of-accuracy convergence rates using the Method of Manufactured Solutions (MMS). We present tests of individual components including time-integration and advection schemes, non-orthogonal toroidal field-aligned coordinate systems and the shifted metric procedure which is used to handle highly sheared grids. The flux coordinate independent approach to differencing along magnetic field-lines has been implemented in BOUT++ and is here verified using the MMS in a sheared slab configuration. Finally, we show tests of three complete models: 2-field Hasegawa-Wakatani in 2D slab, 3-field reduced magnetohydrodynamics (MHD) in 3D field-aligned toroidal coordinates, and 5-field reduced MHD in slab geometry.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

TURBULENT CONVECTION IN STELLAR INTERIORS. III. MEAN-FIELD ANALYSIS AND STRATIFICATION EFFECTS

We present three-dimensional implicit large eddy simulations of the turbulent convection in the envelope of a 5 M{sub Sun} red giant star and in the oxygen-burning shell of a 23 M{sub Sun} supernova progenitor. The numerical models are analyzed in the framework of one-dimensional Reynolds-Averaged Navier-Stokes equations. The effects of pressure fluctuations are more important in the red giant model, owing to larger stratification of the convective zone. We show how this impacts different terms in the mean-field equations. We clarify the driving sources of kinetic energy, and show that the rate of turbulent dissipation is comparable to the convective luminosity. Although our flows have low Mach numbers and are nearly adiabatic, our analysis is general and can be applied to photospheric convection as well. The robustness of our analysis of turbulent convection is supported by the insensitivity of the mean-field balances to linear mesh resolution. We find robust results for the turbulent convection zone and the stable layers in the oxygen-burning shell model, and robust results everywhere in the red giant model, but the mean fields are not well converged in the narrow boundary regions (which contain steep gradients) in the oxygen-burning shell model. This last result illustrates the importance of unresolved physics at the convective boundary, which governs the mixing there.

79 ASTRONOMY AND ASTROPHYSICS↗

Analytical and experimental investigation of stator endwall contouring in a small axial-flow turbine. 1: Stator performance

Three stator configurations were studied to determine the effect of stator outer endwall contouring on stator performance. One configuration was a cylindrical stator design. One contoured stator configuration had an S-shaped outer endwall, the other had a conical-convergent outer endwall. The experimental investigation consisted of annular surveys of stator exit total pressure and flow angle for each stator configuration over a range of stator pressure ratio. Radial variations in stator loss and aftermixed flow conditions were obtained when these data were compared with the analytical results to assess the validity of the analysis, good agreement was found.

Haas, J. E.↗

Vectorizable multigrid algorithms for transonic flow calculations

The analysis and incorporation into a multigrid scheme of several vectorizable algorithms are discussed. Von Neumann analyses of vertical line, horizontal line, and alternating direction ZEBRA algorithms were performed; and the results were used to predict their multigrid damping rates. The algorithms were then successfully implemented in a transonic conservative full-potential computer program. The convergence acceleration effect of multiple grids is shown and the convergence rates of the vectorizable algorithms are compared to the convergence rates of standard successive line overrelaxation (SLOR) algorithms.

Melson, N. D.↗

Solution of elliptic PDEs by fast Poisson solvers using a local relaxation factor

A large class of two- and three-dimensional, nonseparable elliptic partial differential equations (PDEs) is presently solved by means of novel one-step (D'Yakanov-Gunn) and two-step (accelerated one-step) iterative procedures, using a local, discrete Fourier analysis. In addition to being easily implemented and applicable to a variety of boundary conditions, these procedures are found to be computationally efficient on the basis of the results of numerical comparison with other established methods, which lack the present one's: (1) insensitivity to grid cell size and aspect ratio, and (2) ease of convergence rate estimation by means of the coefficient of the PDE being solved. The two-step procedure is numerically demonstrated to outperform the one-step procedure in the case of PDEs with variable coefficients.

Chang, Sin-Chung↗

A coordination theory for intelligent machines

A formal model for the coordination level of intelligent machines is established. The framework of the coordination level investigated consists of one dispatcher and a number of coordinators. The model called coordination structure has been used to describe analytically the information structure and information flow for the coordination activities in the coordination level. Specifically, the coordination structure offers a formalism to (1) describe the task translation of the dispatcher and coordinators; (2) represent the individual process within the dispatcher and coordinators; (3) specify the cooperation and connection among the dispatcher and coordinators; (4) perform the process analysis and evaluation; and (5) provide a control and communication mechanism for the real-time monitor or simulation of the coordination process. A simple procedure for the task scheduling in the coordination structure is presented. The task translation is achieved by a stochastic learning algorithm. The learning process is measured with entropy and its convergence is guaranteed. Finally, a case study of the coordination structure with three coordinators and one dispatcher for a simple intelligent manipulator system illustrates the proposed model and the simulation of the task processes performed on the model verifies the soundness of the theory.

Wang, Fei-Yue↗

Flow analysis and design optimization methods for nozzle afterbody of a hypersonic vehicle

This report summarizes the methods developed for the aerodynamic analysis and the shape optimization of the nozzle-afterbody section of a hypersonic vehicle. Initially, exhaust gases were assumed to be air. Internal-external flows around a single scramjet module were analyzed by solving the three dimensional Navier-Stokes equations. Then, exhaust gases were simulated by a cold mixture of Freon and Argon. Two different models were used to compute these multispecies flows as they mixed with the hypersonic airflow. Surface and off-surface properties were successfully compared with the experimental data. In the second phase of this project, the Aerodynamic Design Optimization with Sensitivity analysis (ADOS) was developed. Pre and post optimization sensitivity coefficients were derived and used in this quasi-analytical method. These coefficients were also used to predict inexpensively the flow field around a changed shape when the flow field of an unchanged shape was given. Starting with totally arbitrary initial afterbody shapes, independent computations were converged to the same optimum shape, which rendered the maximum axial thrust.

Baysal, Oktay↗

Heating analysis for a Lunar Transfer Vehicle at near-equilibrium flow conditions

A heating analysis for a 15.2 m diameter Lunar Transfer Vehicle (LTV) at 0 and 10.6 deg angle of attack for a nominal trajectory through the earth's atmosphere is described. The analysis utilizes the Langley Aerothermodynamic Upwind Relaxation Algorithm (LAURA) with thin-layer, Navier-Stokes, thermochemical nonequilibrium options. Radiative heating levels are calculated using the Langley Optimized RAdiative Nonequilibrium (LORAN) and the Non-EQuilibrium AIr Radiation (NEQAIR) codes. At peak heating, the shock layer is substantially in equilibrium. Comprehensive spatial and spectral grid convergence studies have been implemented to quantify grid effects on the convective and radiative heating levels. Axisymmetric tests including the coupled effects of radiative energy transfer show negligible change to the convective heating and a 20 percent reduction in the radiative heating.

Gnoffo, Peter A.↗

An HP Adaptive Discontinuous Galerkin Method for Hyperbolic Conservation Laws

This dissertation addresses various issues for model classes of hyperbolic conservation laws. The basic approach developed in this work employs a new family of adaptive, hp-version, finite element methods based on a special discontinuous Galerkin formulation for hyperbolic problems. The discontinuous Galerkin formulation admits high-order local approximations on domains of quite general geometry, while providing a natural framework for finite element approximations and for theoretical developments. The use of hp-versions of the finite element method makes possible exponentially convergent schemes with very high accuracies in certain cases; the use of adaptive hp-schemes allows h-refinement in regions of low regularity and p-enrichment to deliver high accuracy, while keeping problem sizes manageable and dramatically smaller than many conventional approaches. The use of discontinuous Galerkin methods is uncommon in applications, but the methods rest on a reasonable mathematical basis for low-order cases and has local approximation features that can be exploited to produce very efficient schemes, especially in a parallel, multiprocessor environment. The place of this work is to first and primarily focus on a model class of linear hyperbolic conservation laws for which concrete mathematical results, methodologies, error estimates, convergence criteria, and parallel adaptive strategies can be developed, and to then briefly explore some extensions to more general cases. Next, we provide preliminaries to the study and a review of some aspects of the theory of hyperbolic conservation laws. We also provide a review of relevant literature on this subject and on the numerical analysis of these types of problems.

Bey, Kim S.↗

Application of Spectroscopic Doppler Velocimetry for Measurement of Streamwise Vorticity

A spectroscopic Doppler velocimetry technique has been developed for measuring two transverse components of velocity and hence streamwise vorticity in free jet flows. The nonintrusive optical measurement system uses Mie scattering from a 200 mW green continuous-wave laser interacting with dust and other tracer particulates naturally present in the air flow to measure the velocities. Scattered light is collected in two opposing directions to provide measurements of two orthogonal velocity components. An air-spaced Fabry-Perot interferometer is used for spectral analysis to determine the optical frequency shift between the incident laser light and the Mie scattered light. This frequency shift is directly proportional to the velocity component in the direction of the bisector of the incident and scattered light wave propagation vectors. Data were acquired for jet Mach numbers of 1.73 and 0.99 using a convergent 1.27-cm diameter round nozzle fitted with a single triangular "delta-tab". The velocity components and the streamwise vorticity calculated from the measurements are presented. The results demonstrate the ability of this novel optical system to obtain velocity and vorticity data without any artificial seeding and using a low power laser system.

Fagan, Amy↗

Monte Carlo sampling and correlation coefficients of critical experiments

We study the influence of calculation parameters on Monte-Carlo generated correlation coefficients of k{sub eff} values for a data set of critical experiments. The correlation coefficients can be used e.g. to reduce conservatism in bias estimations, but generally must be treated correctly if a data set includes correlations. We find that the actual value of the correlation coefficient for a given data set depends on the number of samples and the ratio of the sampling uncertainty to the Monte-Carlo uncertainty of the individual k{sub eff} calculation. We also discuss that the number of input parameters of the model to calculate the k{sub eff} values do not necessarily impact the convergence of the correlation coefficient with increasing sample number. However, we explain how varying the aforementioned parameters lead to different converged results for the correlation coefficients. The conclusion is that a correlation coefficient should not be discussed isolated but with the underlying uncertainties of both, the k{sub eff} estimation and the Monte Carlo sampling approach. The underlying modelling approach of the experimental data has to be described in detail. This should include a sensitivity analysis of the impact of input parameters on the k{sub eff} uncertainty with respect to the modelling approach.

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

Fracture mechanics approach to TRISO fuel particle failure analysis

Weibull stress-based methods for failure probability assessment have been developed and analyzed to assess the integrity of tristructural isotropic (TRISO) fuel particles during fuel life cycles and accident operating conditions. While simple, these methods entail a number of drawbacks when stress concentrates near crack tips, including finite element mesh size dependency when the Weibull stress is averaged over the finite element domain. Fracture mechanics approaches involving the use of interaction integrals eliminate this lack of mesh convergence and produce consistent fracture predictions. In this work, we use an interaction integral approach to computing stress intensity factors for a crack in the inner pyrolytic carbon layer perpendicular to the silicon carbide layer, which is simplified representation of a failure mode in TRISO particles. Further, the interface between these two TRISO layers has been shown to become porous, which we simulate by considering a transition of mechanical properties over such porous length, i.e. the layers are modeled as a functionally graded material. Aspects such as porosity and thermal and irradiation eigenstrains are considered in computing the stress intensity factor from a fracture mechanics approach and compared with the known Weibull stress failure approach. The methodology introduced in this paper enables a more general fracture probability assessment in TRISO particles and eliminates the need to identify best suited parameters when using local or averaged stress-based failure criterion. Finally, the numerical sensitivity studies show how parameters such as the porous transition zone length, the material stiffness, and creep affect the probability of TRISO fuel particle failure.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Variance Estimation in Monte Carlo Eigenvalue Simulations Using Spectral Analysis Method

Monte Carlo (MC) simulation is widely used to solve the eigenvalue form of the Boltzmann transport equation that mathematically represents the neutron transport process through complex multiplying (fissionable) systems. Monte Carlo eigenvalue simulation starts with an assumed fission source distribution and uses the fission sites from the previous iteration (cycle) as the starting source in the current iteration. Important system parameters (MC tallies) such as fuel pin-power distribution are estimated over several cycles after the convergence of the fission source distribution to a stationary distribution. However, the MC fission source iteration algorithm that uses fission source sites from the previous cycle introduces a cycle-to-cycle correlation. Monte Carlo simulations that do not account for the cycle-to-cycle correlation systematically underestimate the variance of the estimated system parameters (sample mean). This paper presents the relationship between the spectral density in the frequency domain at frequency zero and the variance of the sample mean. This paper introduces a novel method in the frequency domain for the MC variance estimation. For the three test problems used in this paper, researchers have observed that the new method results in an improvement of more than one order of magnitude to the standard deviation of the sample mean. The new method also compares favorably with the previously introduced batch, bootstrap, and covariance-adjusted methods when applied to the three test problems investigated in this paper. This new method does not require modification of the MC eigenvalue algorithm (power iteration), is code agnostic, and is therefore easy to use when implementing in any existing MC code. In conclusion, the new estimate can be calculated without saving tally results of all active/stationary cycles.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

EFFECT OF MASKED REGIONS ON WEAK-LENSING STATISTICS

Sky masking is unavoidable in wide-field weak-lensing observations. We study how masks affect the measurement of statistics of matter distribution probed by weak gravitational lensing. We first use 1000 cosmological ray-tracing simulations to examine in detail the impact of masked regions on the weak-lensing Minkowski Functionals (MFs). We consider actual sky masks used for a Subaru Suprime-Cam imaging survey. The masks increase the variance of the convergence field and the expected values of the MFs are biased. The bias then compromises the non-Gaussian signals induced by the gravitational growth of structure. We then explore how masks affect cosmological parameter estimation. We calculate the cumulative signal-to-noise ratio (S/N) for masked maps to study the information content of lensing MFs. We show that the degradation of S/N for masked maps is mainly determined by the effective survey area. We also perform simple {chi}{sup 2} analysis to show the impact of lensing MF bias due to masked regions. Finally, we compare ray-tracing simulations with data from a Subaru 2 deg{sup 2} survey in order to address if the observed lensing MFs are consistent with those of the standard cosmology. The resulting {chi}{sup 2}/n{sub dof} = 29.6/30 for three combined MFs, obtained with the mask effects taken into account, suggests that the observational data are indeed consistent with the standard {Lambda}CDM model. We conclude that the lensing MFs are a powerful probe of cosmology only if mask effects are correctly taken into account.

79 ASTRONOMY AND ASTROPHYSICS↗

Nonadiabatic electron response in the Hasegawa-Wakatani equations

Tokamak edge turbulence is strongly influenced by parallel electron physics, which relaxes density and potential fluctuations towards electron adiabatic response. Beginning with the paradigmatic Hasegawa-Wakatani equations (HWEs) for resistive tokamak edge turbulence, a unique decomposition of the electric potential (φ) into adiabatic (a) and nonadiabatic (b) portions is derived, based on the requirement that a neither drive nor respond to the parallel current j{sub ∥}. The form of the decomposition clarifies that, at perpendicular scales large relative to the sound radius, the electron adiabatic response controls the nonzonal φ, not the fluctuating density n. Simple energy balance arguments allow one to rigorously bound the ratio of rms nonzonal nonadiabatic fluctuations (b(tilde sign)) relative to adiabatic ones (ã). The role of the vorticity nonlinearity in transferring energy between adiabatic and nonadiabatic fluctuations aids intuitive understanding of self-sustained turbulence in the HWEs. When the normalized parallel resistivity is weak, b(tilde sign) becomes effectively slaved, allowing the reduction to an approximate one-field model that remains valid for strong turbulence. In addition to guiding physical intuition, the one-field reduction should greatly ease further analytical manipulations. Direct numerical simulation of the 2D HWEs confirms the convergence of the asymptotic formula for b(tilde sign)

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Resolving electron scale turbulence in spherical tokamaks with flow shear

This paper presents nonlinear gyrokinetic simulations of electron temperature gradient (ETG) turbulence based on spherical tokamak (ST) parameters. Most significantly the simulations include the strong toroidal flow and flow shear present in STs that suppress ion-scale turbulence while using kinetic ions at full mass ratio (m{sub i}/m{sub e}=3600). The flow shear provides a physical long-wavelength cutoff mechanism that aids saturation of the simulations, which has previously been demonstrated to be problematic depending on magnetic shear. As magnetic shear varies widely in STs we systematically demonstrate saturation and convergence of the ETG simulations with respect to grid resolution, physical domain size, and boundary conditions. While using reduced ion mass or adiabatic ions can lessen computational expense they do not always provide reliable results. The resulting spectra from converged simulations are anisotropic everywhere in contrast to previous ETG simulations without flow shear. These results have implications for interpreting turbulence measurements, and represent an important step in determining when and where ETG turbulence is expected to be relevant in ST plasmas. They are also important in the context of validating simulations with both experimental transport analysis and turbulence measurements.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

On unifying randomized methods for inverse problems

This work unifies the analysis of various randomized methods for solving linear and nonlinear inverse problems with Gaussian priors by framing the problem in a stochastic optimization setting. By doing so, we show that many randomized methods are variants of a sample average approximation (SAA). More importantly, we are able to prove a single theoretical result that guarantees the asymptotic convergence for a variety of randomized methods. Additionally, viewing randomized methods as an SAA enables us to prove, for the first time, a single non-asymptotic error result that holds for randomized methods under consideration. Another important consequence of our unified framework is that it allows us to discover new randomization methods. Here, we present various numerical results for linear, nonlinear, algebraic, and PDE-constrained inverse problems that verify the theoretical convergence results and provide a discussion on the apparently different convergence rates and the behavior for various randomized methods.

42 ENGINEERING↗