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Results for “3D Modeling”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 1,747 records · Page 97
All sourcesNASA NTRSDOE OSTI
DOE OSTI2021

Illinois State Geological Survey (ISGS), Illinois Basin - Decatur Project (IBDP) Geological Models, July 7, 2021. Midwest Geological Sequestration Consortium (MGSC) Phase III Data Sets. DOE Cooperative Agreement No. DE-FC26-05NT42588.

Three geological models in Petrel (Mark of Schlumberger) and data output from shallow groundwater modeling using TOUGH Codes from Lawrence Berkeley National Laboratory, included under folders: Static_Geologic_Model, Dynamic_Reservoir_Model, Geomechanical_Model, and Groundwater_Model.

3D Geological Model↗
DOE OSTI2024

A study of the Rayleigh-Taylor Instability during deceleration in inertial confinement fusion relevant conditions [Slides]

Large Planar targets with significant room for RTI evolution could have the potential to reach regimes where magnetic field damping of RTI is observable. Hot-electron generation at 1 PW/cm 2 and greater can introduced substantial preheat to experimental targets. Manufacturing defects can create further 3D complexity in targets designed and modeled in 2D. Computational models used in experimental designing do not always account for all the physics present and must be reevaluated based on experimental data. 3D modeling and provide high fidelity estimates on what the experimental data will look like, and can be utilized for high fidelity bench-marking or complex 3D experimental design work.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2014

Mechanistic and Quantitative Studies of Bystander Response in 3D Tissues for Low-Dose Radiation Risk Estimations

We have used the MatTek 3-dimensional human skin model to study the gene expression response of a 3D model to low and high dose low LET radiation, and to study the radiation bystander effect as a function of distance from the site of irradiation with either alpha particles or low LET protons. We have found response pathways that appear to be specific for low dose exposures, that could not have been predicted from high dose studies. We also report the time and distance dependent expression of a large number of genes in bystander tissue. the bystander response in 3D tissues showed many similarities to that described previously in 2D cultured cells, but also showed some differences.

3D Tissue Model↗
DOE OSTI2014

A comparison of two- and three-dimensional neutrino-hydrodynamics simulations of core-collapse supernovae

We present numerical results on two- (2D) and three-dimensional (3D) hydrodynamic core-collapse simulations of an 11.2 M {sub ☉} star. By changing numerical resolutions and seed perturbations systematically, we study how the postbounce dynamics are different in 2D and 3D. The calculations were performed with an energy-dependent treatment of the neutrino transport based on the isotropic diffusion source approximation scheme, which we have updated to achieve a very high computational efficiency. All of the computed models in this work, including nine 3D models and fifteen 2D models, exhibit the revival of the stalled bounce shock, leading to the possibility of explosion. All of them are driven by the neutrino-heating mechanism, which is fostered by neutrino-driven convection and the standing-accretion-shock instability. Reflecting the stochastic nature of multi-dimensional (multi-D) neutrino-driven explosions, the blast morphology changes from model to model. However, we find that the final fate of the multi-D models, whether an explosion is obtained or not, is little affected by the explosion stochasticity. In agreement with some previous studies, higher numerical resolutions lead to slower onset of the shock revival in both 2D and 3D. Based on the self-consistent supernova models leading to the possibility of explosions, our results systematically show that the revived shock expands more energetically in 2D than in 3D.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2023

3D-equivariant graph neural networks for protein model quality assessment

Quality assessment (QA) of predicted protein tertiary structure models plays an important role in ranking and using them. With the recent development of deep learning end-to-end protein structure prediction techniques for generating highly confident tertiary structures for most proteins, it is important to explore corresponding QA strategies to evaluate and select the structural models predicted by them since these models have better quality and different properties than the models predicted by traditional tertiary structure prediction methods. We develop EnQA, a novel graph-based 3D-equivariant neural network method that is equivariant to rotation and translation of 3D objects to estimate the accuracy of protein structural models by leveraging the structural features acquired from the state-of-the-art tertiary structure prediction method—AlphaFold2. We train and test the method on both traditional model datasets (e.g. the datasets of the Critical Assessment of Techniques for Protein Structure Prediction) and a new dataset of high-quality structural models predicted only by AlphaFold2 for the proteins whose experimental structures were released recently. Our approach achieves state-of-the-art performance on protein structural models predicted by both traditional protein structure prediction methods and the latest end-to-end deep learning method—AlphaFold2. It performs even better than the model QA scores provided by AlphaFold2 itself. The results illustrate that the 3D-equivariant graph neural network is a promising approach to the evaluation of protein structural models. Integrating AlphaFold2 features with other complementary sequence and structural features is important for improving protein model QA.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2016

BioSig3D: High Content Screening of Three-Dimensional Cell Culture Models

BioSig3D is a computational platform for high-content screening of three-dimensional (3D) cell culture models that are imaged in full 3D volume. It provides an end-to-end solution for designing high content screening assays, based on colony organization that is derived from segmentation of nuclei in each colony. BioSig3D also enables visualization of raw and processed 3D volumetric data for quality control, and integrates advanced bioinformatics analysis. The system consists of multiple computational and annotation modules that are coupled together with a strong use of controlled vocabularies to reduce ambiguities between different users. It is a web-based system that allows users to: design an experiment by defining experimental variables, upload a large set of volumetric images into the system, analyze and visualize the dataset, and either display computed indices as a heatmap, or phenotypic subtypes for heterogeneity analysis, or download computed indices for statistical analysis or integrative biology. BioSig3D has been used to profile baseline colony formations with two experiments: (i) morphogenesis of a panel of human mammary epithelial cell lines (HMEC), and (ii) heterogeneity in colony formation using an immortalized non-transformed cell line. These experiments reveal intrinsic growth properties of well-characterized cell lines that are routinely used for biological studies. BioSig3D is being released with seed datasets and video-based documentation.

Science & Technology - Other Topics↗
NASA NTRS2001

Intersymbol Interference Investigations Using a 3D Time-Dependent Traveling Wave Tube Model

For the first time, a physics based computational model has been used to provide a direct description of the effects of the TWT (Traveling Wave Tube) on modulated digital signals. The TWT model comprehensively takes into account the effects of frequency dependent AM/AM and AM/PM conversion; gain and phase ripple; drive-induced oscillations; harmonic generation; intermodulation products; and backward waves. Thus, signal integrity can be investigated in the presence of these sources of potential distortion as a function of the physical geometry of the high power amplifier and the operational digital signal. This method promises superior predictive fidelity compared to methods using TWT models based on swept amplitude and/or swept frequency data. The fully three-dimensional (3D), time-dependent, TWT interaction model using the electromagnetic code MAFIA is presented. This model is used to investigate assumptions made in TWT black box models used in communication system level simulations. In addition, digital signal performance, including intersymbol interference (ISI), is compared using direct data input into the MAFIA model and using the system level analysis tool, SPW (Signal Processing Worksystem).

Kory, Carol L.↗
DOE OSTI2020

Arctic Coastal Erosion: Modeling and Experimentation

Increasing Arctic coastal erosion rates have put critical infrastructure and native communities at risk while also mobilizing ancient organic carbon into modern carbon cycles. Although the Arctic comprises one-third of the global coastline and has some of the fastest eroding coasts, current tools for quantifying permafrost erosion are unable to explain the episodic, storm-driven erosion events. Our approach, mechanistically coupling oceanographic predictions with a terrestrial model to capture the thermo-mechanical dynamics of erosion, enables this much needed treatment of transient erosion events. The Arctic Coastal Erosion Model consists of oceanographic and atmospheric boundary conditions that force a coastal terrestrial permafrost environment in Albany (a multi-physics based finite element model). An oceanographic modeling suite (consisting of WAVEWATCH III, Delft3D-FLOW, and Delft3D-WAVE) produced time-dependent surge and run-up boundary conditions for the terrestrial model. In the terrestrial model, a coupling framework unites the mechanical and thermal aspects of erosion. 3D stress/strain fields develop in response to a plasticity model of the permafrost that is controlled by the frozen water content determined by modeling 3D heat conduction and solid-liquid phase change. This modeling approach enables failure from any allowable deformation (block failure, slumping, etc.). Extensive experimental work has underpinned the ACE Model development including field campaigns to measure in situ ocean and erosion processes, strength properties derived from thermally driven geomechanical experiments, as well as extensive physical composition and geochemical analyses. Combined, this work offers the most comprehensive and physically grounded treatment of Arctic coastal erosion available in the literature. The ACE model and experimental results can be used to inform scientific understanding of coastal erosion processes, contribute to estimates of geochemical and sediment land-to-ocean fluxes, and facilitate infrastructure susceptibility assessments.

54 ENVIRONMENTAL SCIENCES↗
NASA NTRS2018

Modeling Terrestrial Planetary Atmospheres with ROCKE-3D

I will discuss recent work showing the capabilities of ROCKE-3Dto model the atmospheres of a diverse range of terrestrial worlds from tidallylocked Proxima Centauri b to the ancient Moon.Some emphasis will be placed on ancient Venus simulations thatmay indicate that its present atmospheric state is more tied tothe global-scale resurfacing event of the past Gy than to its proximity to a gradually warming sun over the past 4Gy.

Way, Michael↗
DOE OSTI2018

Development of Transient Coupled Chemical-Thermal-Fluid Multiphysics Simulation for Unsealed, Vented Aluminum-clad Spent Nuclear Fuel Storage Canister

As the second step towards modeling three-dimensional (3D) multi-physics computational fluid dynamics (CFD) of the unsealed containers in the IFSF facility, the previous methodology used for developing the sealed DOE standard canister model was utilized here. This 3D CFD model considers unsealed canister with small mass exchange with surrounding air as time evolves in the simulation and contains a larger network of chemical reactions to consider due to several of the side reactions occurring in the presence of water vapor, nitrogen, oxygen and carbon dioxide rather than a helium backfilled canister. Similar to the sealed system, the set of full radiolytic chemical reactions of bulk moist air were established, and then reduced to a more manageable set of equations for the computational efficiency of the 3D CFD simulation. Due to the similar size of the unsealed canisters to the sealed DOE canisters, it is assumed that the chemical and thermal response times to changes in the conditions remains similar such that the same time-stepping algorithm can be utilized. This report documents the theory of the model, workflow to establish radiolysis reaction network, and initial simulations of the evolutions of thermal fields, hydrogen gas and nitric acid concentrations within unsealed canisters in conditions relevant to INL INTEC CPP-603 over a long period of time.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗
DOE OSTI2025

Multiscale Modeling Framework for Lithium Nucleation in 3D Porous Carbon Anodes

Porous carbon scaffolds offer a promising route for mitigating non-uniform lithium (Li) plating to enhance the safety and longevity of Li metal batteries. However, the influence of microstructural morphology on Li nucleation is not well understood. Here, we present a multiscale modeling framework to investigate how the porous microstructure of carbon materials affects Li nucleation behavior. Ab initio molecular dynamics simulations quantify the nucleation energy barriers of Li on graphene as a function of Li content, surface curvature, and applied potential, providing key parameters for a classical nucleation theory (CNT) model. From macroscale half-cell simulations, we obtained Li concentration and electrical potential profiles to define boundary conditions for mesoscopic simulations. At the mesoscale, three distinct synthetic 3D microstructures with different porosities and characteristic feature sizes are generated to resolve local distributions of Li flux, current density, and mechanical stress. These outputs are integrated into the CNT model to map spatial variation in nucleation rates. Our findings reveal trade-offs between suppressing nucleation rates and achieving spatial uniformity, offering design guidelines for optimizing porous carbon anodes to balance nucleation control and mechanical integrity.

Materials science↗
DOE OSTI2012

A 3D Monte Carlo code for the modeling of plasma dynamics and beam formation mechanism in electron cyclotron resonance ion sources

The code here presented is the first part of a Monte Carlo (MC) self-consistent 3D plasma simulator. It is yet able to solve the equation of motion for thousands of independent charged particles. The procedure allows to understand the consequences of each phenomenon introduced in the evolution steps of the code. MC random selection of starting parameters is used for each particles; the environmental conditions enclosed in the simulation are ECRIS magnetic field, resonant electromagnetic wave, initial plasma density distribution and MC calculation of Spitzer collision. The results of the first simulations explain some typical effects as the hollow beam formation and the main plasma deconfinement mechanism.

43 PARTICLE ACCELERATORS↗
DOE OSTI2021

Investigating the Impact of Thickness, Calendering and Channel Structures of Printed Electrodes on the Energy Density of LIBs - 3D Simulation and Validation

Current lithium ion batteries (LIBs) are expensive and bulky, limited by relatively low charging rates. To increase the rate of charging and reduce weight, thin electrodes with high energy density are required. The increase in energy density can be achieved by several techniques including boosting electrolyte transport, high loading/utilization of active material, employing high conductive electrolytes and electrodes with advanced architectures, and increasing cell temperature. In this paper, a 3D physics-based electrochemical model of LIBs is developed in COMSOL simulation software for different thickness, calendering steps as well as channel structures (conical, cylindrical) to optimize the electrode design and in turn maximize volumetric energy density. The simulation results demonstrated that calendering the electrodes with high initial porosity increases the volumetric energy density of the cell. In addition, cylindrical channel structures with relatively lower edge-to-edge distance also results in increased volumetric energy density. The simulation results of the 3D model was validated by comparing it with experimental results.

improving volumetric energy density↗
DOE OSTI2025

A machine-learning approach to measure 3D sample properties from 2D Transmission Electron Microscopy images

Transmission Electron Microscopy (TEM) is a powerful tool for the characterization of materials at the nanoscale; however, its inherent two-dimensional (2D) nature poses significant challenges to accurately measure three-dimensional (3D) properties. We introduce a supervised machine-learning model that predicts 3D structural information, such as sample thickness and curvature, from a series of conventional 2D TEM images. The model, a U-Net convolutional neural network, is trained on a large synthetic dataset generated from dynamical diffraction simulations that model TEM’s complex, nonlinear image formation, accounting for sample thickness and curvature. This physically realistic framework enables exploration of a broad parameter space impractical to sample experimentally. We demonstrate that the trained model has accurate predictions for experimental single-crystal silicon samples, achieving performance comparable to established measurement techniques. This work highlights the critical role of robust, simulation-based training in overcoming the limitations of real-world imaging artifacts and inconsistent sample geometries. By integrating machine learning with numerical simulations, we offer an efficient and scalable framework for quantitative TEM analysis, paving the way for more sophisticated 3D characterization of complex materials.

Dynamical diffraction↗
DOE OSTI2014

Measurement of the internal stress and electric field in a resonating piezoelectric transformer for high-voltage applications using the electro-optic and photoelastic effects

The high output voltages from piezoelectric transformers are currently being used to accelerate charged particle beams for x-ray and neutron production. Traditional methods of characterizing piezoelectric transformers (PTs) using electrical probes can decrease the voltage transformation ratio of the device due to the introduction of load impedances on the order of hundreds of kiloohms to hundreds of megaohms. Consequently, an optical diagnostic was developed that used the photoelastic and electro-optic effects present in piezoelectric materials that are transparent to a given optical wavelength to determine the internal stress and electric field. The combined effects of the piezoelectric, photoelastic, and electro-optic effects result in a time-dependent change the refractive indices of the material and produce an artificially induced, time-dependent birefringence in the piezoelectric material. This induced time-dependent birefringence results in a change in the relative phase difference between the ordinary and extraordinary wave components of a helium-neon laser beam. The change in phase difference between the wave components was measured using a set of linear polarizers. The measured change in phase difference was used to calculate the stress and electric field based on the nonlinear optical properties, the piezoelectric constitutive equations, and the boundary conditions of the PT. Maximum stresses of approximately 10 MPa and electric fields of as high as 6 kV/cm were measured with the optical diagnostic. Measured results were compared to results from both a simple one-dimensional (1D) model of the piezoelectric transformer and a three-dimensional (3D) finite element model. Measured stresses and electric fields along the length of an operating length-extensional PT for two different electrical loads were within at least 50 % of 3D finite element simulated results. Additionally, the 3D finite element results were more accurate than the results from the 1D model for a wider range of electrical load impedances under test.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
DOE OSTI2025

Clumping index estimation with 30°-tilted cameras in row crops: Evaluation of methods and segment size effects

The clumping index (CI) quantifies the spatial distribution of foliage elements and is essential for accurately estimating the plant area index (PAI), canopy radiative transfer, and photosynthesis. Traditionally, the finite-length averaging method (LX), the gap size distribution method (CC), and a combined approach of CC and LX (CLX) have been applied to instruments like TRAC and digital hemispherical photography to estimate CI. However, a comprehensive evaluation of these methods in row crops remains limited, especially regarding the influence of segment size on CI. Meanwhile, digital cameras offer a cost-effective and user-friendly solution for canopy measurements in row crops, yet their application in this context remains underexplored. In this study, we employed a new approach using a 30°-tilted digital camera to estimate CI in corn and soybean fields, applying the LX, CC, and CLX methods. We systematically assessed the performance of these three methods by combining field measurements in real-world fields with simulations using the LESS 3D radiative transfer model. Our results showed that CLX applied to the whole image and 45° segment offered accurate estimation of CI (bias within ±0.1, RMSE < 0.2) and PAI (bias within ±0.4, RMSE < 1) in real-world fields and LESS simulations. The accuracy of the LX method was highly sensitive to segment size, with the best performance observed at the 15° segment (PAI bias within ±0.4). In contrast, the CC method remained stable across different segment sizes, and its performance was generally comparable to that of LX, except at the 15° segment. Across view zenith angles, CI derived from CC generally showed a continuous increase, while those from LX and CLX followed a rising trend at small zenith angles but began to decline at 68°, likely due to an increasing proportion of no-gap segments. Seasonally, LX tended to show decreasing CI during early growth stages but increased as the canopy matured, whereas CC and CLX showed gradually increasing CI before plateauing at peak PAI. The 30°-tilted camera effectively captured CI variations across different angles and growth stages, making it a practical and robust instrument for row crop canopy structure analysis. Furthermore, applying these CI methods to digital cameras offers a low-cost and accessible CI estimation alternative, improving canopy structure monitoring accuracy in row crops.

30°-tilted camera↗
DOE OSTI2021

General Relativistic Neutrino-driven Turbulence in One-dimensional Core-collapse Supernovae

Abstract Convection and turbulence in core-collapse supernovae (CCSNe) are inherently three-dimensional (3D) in nature. However, 3D simulations of CCSNe are computationally demanding. Thus, it is valuable to modify simulations in spherical symmetry to incorporate 3D effects using some parametric model. In this paper, we report on the formulation and implementation of general relativistic neutrino-driven turbulent convection in the spherically symmetric core-collapse supernova code GR1D . This is based upon the recently proposed method of Simulated Turbulence in Reduced Dimensionality (STIR) in Newtonian simulations from Couch et al. (2020). When the parameters of this model are calibrated to 3D simulations, we find that our general relativistic formulation of STIR requires larger turbulent eddies to achieve a shock evolution similar to the original STIR model. We also find that general relativity may alter the correspondence between progenitor mass and successful versus failed explosions.

Astronomy & Astrophysics↗