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DOE OSTI2021

Photo-Switching of Protein Dynamical Collectivity

We examine changes in the picosecond structural dynamics with irreversible photobleaching of red fluorescent proteins (RFP) mCherry, mOrange2 and TagRFP-T. Measurements of the protein dynamical transition using terahertz time-domain spectroscopy show in all cases an increase in the turn-on temperature in the bleached state. The result is surprising given that there is little change in the protein surface, and thus, the solvent dynamics held responsible for the transition should not change. A spectral analysis of the measurements guided by quasiharmonic calculations of the protein absorbance reveals that indeed the solvent dynamical turn-on temperature is independent of the thermal stability/photostate however the protein dynamical turn-on temperature shifts to higher temperatures. This is the first demonstration of switching the protein dynamical turn-on temperature with protein functional state. The observed shift in protein dynamical turn-on temperature relative to the solvent indicates an increase in the required mobile waters necessary for the protein picosecond motions, that is, these motions are more collective. Melting-point measurements reveal that the photobleached state is more thermally stable, and structural analysis of related RFP’s shows that there is an increase in internal water channels as well as a more uniform atomic root mean squared displacement. These observations are consistent with previous suggestions that water channels form with extended light excitation providing O2 access to the chromophore and subsequent fluorescence loss. We report that these same channels increase internal coupling enhancing thermal stability and collectivity of the picosecond protein motions. The terahertz spectroscopic characterization of the protein and solvent dynamical onsets can be applied generally to measure changes in collectivity of protein motions.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2020

Revisiting the Architecture of the KOI-89 System

While high stellar obliquities observed in exoplanetary systems may be attributed to processes that tilt the planetary orbits, it is also possible that they reflect misalignments between protoplanetary disks and stellar spins. This latter hypothesis predicts the presence of coplanar multiplanetary systems misaligned with their central stars. Here we reevaluate the evidence of such an architecture that has been claimed for the KOI-89 system. An early-type star, KOI-89 has one validated transiting planet, KOI-89.01/Kepler-462b (period 84.7 days, radius 3.0 R {sub ⊕}), and one transiting planet candidate, KOI-89.02 (period 207.6 days, radius 4.0 R {sub ⊕}), where the latter exhibits transit timing variations (TTVs). A previous modeling of the stellar gravity-darkening effect in the transit light curves inferred a high stellar obliquity of ≈70°. We perform photodynamical modeling of the Kepler transit light curves and use the resulting constraints on the orbital configuration and transit times to update the gravity-darkened transit model. As a result, we find no firm evidence for the gravity-darkening effect in the transit shapes and conclude that stellar obliquity is not constrained by the data. Given the evidence for low orbital eccentricities from the dynamical analysis, the system architecture can thus be consistent with many other multitransiting systems with flat, near-circular orbits aligned with the stellar spin. We find that the TTVs imparted on its neighbor imply that KOI-89.01 has a mass ≳20 M {sub ⊕}. This would render it one of the densest known sub-Neptunes, mostly composed of a solid core. Lower masses are possible if the TTVs are instead due to an unseen third planet.

79 ASTRONOMY AND ASTROPHYSICS↗

NASA NTRS1972

Dynamic response of a plane-symmetrical exothermic reaction center.

?sger,An analysis of the dynamic behavior of an idealized, plane-symmetrical exothermic reaction center is presented. The conservation equations for the reaction center are combined and yield a single integral equation expressing a nonlinear transfer function of the system for which the input is provided by a given time profile of the heat released per unit mass while the output gives the pressure pulse it generates under the restriction of plane-symmetrical motion. The solution is governed by a Daumk]hler number. For a given form of the exothermic power pulse profile, the dynamic behavior of the system is completely specified in terms of only this Daumk]hler number and the heat of reaction per unit mass of the combustible medium. Specific solutions are worked out for a set of typical elementary power pulse profiles, and the practical significance of the results is illustrated by their application to the problem of transition to detonation in an explosive gas.

Meyer, J. W.↗

NASA NTRS1976

Image animation for theme enhancement and change detection

Animated displays are useful in enhancing subtle temporally related changes in scenes viewed by satellites capable of providing repetitive coverage. The detectability of fixed features is also improved through the help of the powerful visual integration process. To expedite the process of assembling and displaying well-registered, time-lapse sequences and to provide means for making quantitative measurements of radiances, displacements, and areas, an electronic satellite image analysis console was constructed. During the LANDSAT-1 program, this equipment was applied to the needs of a number of earth resource investigators with interests principally related to dynamic hydrology. The measurement of the areal extent of snow cover within defined drainage basins is discussed as a representative applications example.

Evans, W. E.↗

NASA NTRS1980

Korean coastal water depth/sediment and land cover mapping /1:25,000/ by computer analysis of Landsat imagery

Computer analysis was applied to single data Landsat MSS imagery of a coastal area near Seoul, Korea equivalent to a 1:50,000 topographic map, and featuring large dynamic sediment transport processes. Supervised image processing yielded a test classification map containing five water depth/sediment classes, two shoreline/tidal classes and five coastal land cover classes at a scale of 1:25,000 and with a training set accuracy of 76%; the training sets were selected by direct examination of the digitally displayed imagery. The unsupervised ISOCLAS (Senkus, 1976) clustering analysis was performed to assess the relative value of this approach to image classification in areas of sparse or nonexistent ground control. Results indicate that it is feasible to produce quantitative maps for detailed study of dynamic coastal processes given a Landsat image data base at sufficiently frequent time intervals.

Park, K. Y.↗

NASA NTRS1983

Compliance and stress sensitivity of spur gear teeth

The magnitude and variation of tooth pair compliance with load position affects the dynamics and loading significantly, and the tooth root stressing per load varies significantly with load position. Therefore, the recently developed time history, interactive, closed form solution for the dynamic tooth loads for both low and high contact ratio spur gears was expanded to include improved and simplified methods for calculating the compliance and stress sensitivity for three involute tooth forms as a function of load position. The compliance analysis has an improved fillet/foundation. The stress sensitivity analysis is a modified version of the Heywood method but with an improvement in the magnitude and location of the peak stress in the fillet. These improved compliance and stress sensitivity analyses are presented along with their evaluation using test, finite element, and analytic transformation results, which showed good agreement.

Cornell, R. W.↗

NASA NTRS1986

Mean neutral circulation in the winter polar F region

A description of the mean global-scale circulation in the Northern Hemisphere F region has been synthesized by collating and averaging data from a global network of ground-based Fabry-Perot interferometers and from satellite sensors. An analysis of the results obtained shows that the combination of measurements made from multiple, strategically located ground-based observatories with satellite data provides a powerful technique for specifying the mean dynamic state of the earth's thermosphere. It is also found that a three-dimensional time-dependent numerical model with appropriate inputs for mean ionospheric convection can adequately predict the general characteristics observed in the mean thermospheric circulation.

Killeen, T. L.↗

NASA NTRS1986

Polar motion and length of day determination from satellite laser ranging

The kinematic and dynamic models used in obtaining the GSFC MERIT solution (using data from satellite laser ranging) for the x and y coordinates of the earth's rotation pole and the excess length-of-day (LOD) are discussed together with the analysis technique. Comparisons of the GSFC polar motion time series with the time series from the Bureau International de l'Heure shows small but consistent systematic differences (4.6 milliarcsec rms about a mean offset of 1 milliarcsec in the x component, and 2.9 milliarcsec rms about a 21 milliarcsec offset in the y component). A comparison with the data of the National Geodetic Survey's IRIS network shows departures of 2.5 milliarcsec rms about the mean for the x component and 2.0 milliarcsec rms for the y component. The precision of the GSFC earth orientation is estimated to be better than 1 milliarcsec for polar motion and 0.1 msec for excess LOD.

Smith, David E.↗

NASA NTRS1986

A new approach to the solution of boundary value problems involving complex configurations

A new approach for solving certain types of boundary value problems about complex configurations is presented. Numerical algorithms from such diverse fields as finite elements, preconditioned Krylov subspace methods, discrete Fourier analysis, and integral equations are combined to take advantage of the memory, speed and architecture of current and emerging supercomputers. Although the approach has application to many branches of computational physics, the present effort is concentrated in areas of Computational Fluid Dynamics (CFD) such as steady nonlinear aerodynamics, time harmonic unsteady aerodynamics, and aeroacoustics. The most significant attribute of the approach is that it can handle truly arbitrary boundary geometries and eliminates the difficult task of generating surface fitted grids.

Rubbert, P. E.↗

NASA NTRS1990

A chaotic attractor in timing noise from the Vela pulsar?

Fourteen years of timing residual data from the Vela pulsar have been analyzed in order to determine if a chaotic dynamical process is the origin of timing noise. Using the correlation sum technique, a dimension of about 1.5 is obtained. This low dimension indicates underlying structure in the phase residuals which may be evidence for a chaotic attractor. It is therefore possible that nonlinear dynamics intrinsic to the spin-down may be the cause of the timing noise in the Vela pulsar. However, it has been found that the stimulated random walks in frequency and frequency derivative often used to model pulsar timing noise also have low fractal dimension, using the same analysis technique. Recent work suggesting that random processes with steep power spectra can mimic strange attractors seems to be confirmed in the case of these random walks. It appears that the correlation sum estimator for dimension is unable to distinguish between chaotic and random processes.

Harding, Alice K.↗

NASA NTRS1993

Unsteady Navier-Stokes simulation of the canard-wing-body ramp motion

A time-accurate thin-layer Navier-Stokes simulation of the unsteady flowfield is performed for a typical canard-wing-body configuration undergoing ramp motions. The computations are made at a transonic Mach number of 0.90 and for ramp angles from 0 to 15 degrees. Accuracy is determined by comparisons with steady-state experimental data and with spatial and time-step refinement studies. During the ramp motion, the computational results show improved dynamic lift performance and a strong canard-wing interaction for the canard-on configuration. Formation of the canard leading-edge vortex is inhibited in the early stages of the ramp motion. An analysis performed on the transient flowfield after the ramp motion ends shows that the canard vortex rapidly gains strength and vortex breakdown eventually occurs. These characteristics of the canard vortex have significant influences on wing performance.

Tu, Eugene L.↗

NASA NTRS1993

Eighth International Workshop on Laser Ranging Instrumentation

The Eighth International Workshop for Laser Ranging Instrumentation was held in Annapolis, Maryland in May 1992, and was sponsored by the NASA Goddard Space Flight Center in Greenbelt, Maryland. The workshop is held once every 2 to 3 years under differing institutional sponsorship and provides a forum for participants to exchange information on the latest developments in satellite and lunar laser ranging hardware, software, science applications, and data analysis techniques. The satellite laser ranging (SLR) technique provides sub-centimeter precision range measurements to artificial satellites and the Moon. The data has application to a wide range of Earth and lunar science issues including precise orbit determination, terrestrial reference frames, geodesy, geodynamics, oceanography, time transfer, lunar dynamics, gravity and relativity.

Degnan, John J.↗

NASA NTRS1993

Time-Accurate Unsteady Flow Simulations Supporting the SRM T+68-Second Pressure Spike Anomaly Investigation (STS-54B)

Time-accurate unsteady flow simulations are being performed supporting the SRM T+68sec pressure 'spike' anomaly investigation. The anomaly occurred in the RH SRM during the STS-54 flight (STS-54B) but not in the LH SRM (STS-54A) causing a momentary thrust mismatch approaching the allowable limit at that time into the flight. Full-motor internal flow simulations using the USA-2D axisymmetric code are in progress for the nominal propellant burn-back geometry and flow conditions at T+68-sec--Pc = 630 psi, gamma = 1.1381, T(sub c) = 6200 R, perfect gas without aluminum particulate. In a cooperative effort with other investigation team members, CFD-derived pressure loading on the NBR and castable inhibitors was used iteratively to obtain nominal deformed geometry of each inhibitor, and the deformed (bent back) inhibitor geometry was entered into this model. Deformed geometry was computed using structural finite-element models. A solution for the unsteady flow has been obtained for the nominal flow conditions (existing prior to the occurrence of the anomaly) showing sustained standing pressure oscillations at nominally 14.5 Hz in the motor IL acoustic mode that flight and static test data confirm to be normally present at this time. Average mass flow discharged from the nozzle was confirmed to be the nominal expected (9550 lbm/sec). The local inlet boundary condition is being perturbed at the location of the presumed reconstructed anomaly as identified by interior ballistics performance specialist team members. A time variation in local mass flow is used to simulate sudden increase in burning area due to localized propellant grain cracks. The solution will proceed to develop a pressure rise (proportional to total mass flow rate change squared). The volume-filling time constant (equivalent to 0.5 Hz) comes into play in shaping the rise rate of the developing pressure 'spike' as it propagates at the speed of sound in both directions to the motor head end and nozzle. The objectives of the present analysis are to: (1) capture the dynamic responses of the motor combustion gas flow to correlate with available low-frequency (less than 12.5 sample/sec) data and (2) observe the high-frequency (up to 50 Hz) characteristics of the response to determine any potentials for dynamic coupling.

Dougherty, N. S.↗

NASA NTRS1996

On the Dynamics of Small-Scale Solar Magnetic Elements

We report on the dynamics of the small-scale solar magnetic field, based on analysis of very high resolution images of the solar photosphere obtained at the Swedish Vacuum Solar Telescope. The data sets are movies from 1 to 4 hr in length, taken in several wavelength bands with a typical time between frames of 20 s. The primary method of tracking small-scale magnetic elements is with very high contrast images of photospheric bright points, taken through a 12 A bandpass filter centered at 4305 A in the Fraunhofer 'G band.' Previous studies have established that such bright points are unambiguously associated with sites of small-scale magnetic flux in the photosphere, although the details of the mechanism responsible for the brightening of the flux elements remain uncertain. The G band bright points move in the intergranular lanes at speeds from 0.5 to 5 km/s. The motions appear to be constrained to the intergranular lanes and are primarily driven by the evolution of the local granular convection flow field. Continual fragmentation and merging of flux is the fundamental evolutionary mode of small-scale magnetic structures in the solar photosphere. Rotation and folding of chains or groups of bright points are also observed. The timescale for magnetic flux evolution in active region plage is on the order of the correlation time of granulation (typically 6-8 minutes), but significant morphological changes can occur on timescales as short as 100 S. Smaller fragments are occasionally seen to fade beyond observable contrast. The concept of a stable, isolated subarcsecond magnetic 'flux tube' in the solar photosphere is inconsistent with the observations presented here.

Berger, T. E.↗

NASA NTRS1992

Metastable State Relaxation in a Gravitational Field

A metastable state relaxation equation for a physical system placed into a gravitational field is constructed for non-critical supersaturated solutions which arc in the immediate neighborhood of the coexistence line. Solutions of this equation are obtained in two different regimes: stationary and dynamic. The sedimentation time which can be defined as the time of the subcritical solute cluster redistribution corresponding to the final steady state in the gravitational field is found. The formation of the concentration gradient is proved analytically and its expression through the model parameters is obtained. The following analysis gives the expression for the sedimentation time which does not depend on the column height. The law of the concentration change with respect to the column height is also found and analyzed.

Izmailov, Alexander F.↗

NASA NTRS1993

Evolution in vitro: analysis of a lineage of ribozymes

Background: Catalytic RNAs, or ribozymes, possessing both a genotype and a phenotype, are ideal molecules for evolution experiments in vitro. A large, heterogeneous pool of RNAs can be subjected to multiple rounds of selection, amplification and mutation, leading to the development of variants that have some desired phenotype. Such experiments allow the investigator to correlate specific genetic changes with quantifiable alterations of the catalytic properties of the RNA. In addition, patterns of evolutionary change can be discerned through a detailed examination of the genotypic composition of the evolving RNA population. Results: Beginning with a pool of 10(13) variants of the Tetrahymena ribozyme, we carried out in vitro evolution experiments that led to the generation of ribozymes with the ability to cleave an RNA substrate in the presence of Ca2+ ions, an activity that does not exist for the wild-type molecule. Over the course of 12 generations, a seven-error variant emerged that has substantial Ca(2+)-dependent RNA-cleavage activity. Advantageous mutations increased in frequency in the population according to three distinct dynamics--logarithmic, linear and transient. Through a comparative analysis of 31 individual variants, we infer how certain mutations influence the catalytic properties of the ribozyme. Conclusions: In vitro evolution experiments make it possible to elucidate important aspects of both evolutionary biology and structural biochemistry on a reasonable short time scale.

Non-NASA Center↗

NASA NTRS2007

Non-Parametric Collision Probability for Low-Velocity Encounters

An implicit, but not necessarily obvious, assumption in all of the current techniques for assessing satellite collision probability is that the relative position uncertainty is perfectly correlated in time. If there is any mis-modeling of the dynamics in the propagation of the relative position error covariance matrix, time-wise de-correlation of the uncertainty will increase the probability of collision over a given time interval. The paper gives some examples that illustrate this point. This paper argues that, for the present, Monte Carlo analysis is the best available tool for handling low-velocity encounters, and suggests some techniques for addressing the issues just described. One proposal is for the use of a non-parametric technique that is widely used in actuarial and medical studies. The other suggestion is that accurate process noise models be used in the Monte Carlo trials to which the non-parametric estimate is applied. A further contribution of this paper is a description of how the time-wise decorrelation of uncertainty increases the probability of collision.

Carpenter, J. Russell↗

NASA NTRS2008

Helios Prototype Vehicle Mishap: Technical Findings, Recommendations, and Lessons Learned

Instability associated with the Helios Prototype HPO3-2 vehicle was a nonlinear stability and control problem involving complex interactions among the flexible structure, the unsteady aerodynamics, the flight control system, the environmental conditions, and vehicle flight dynamics. Analysis tools and solution techniques were constrained by conventional and segmented linear methodologies that did not provide the proper level of complexity to understand the technology interactions on the vehicle s stability and control characteristics. More advanced, multidisciplinary (structures, aeroelastic, aerodynamics, atmospheric, materials, propulsion, controls, etc) "time-domain" analysis methods appropriate to highly flexible, "morphing" vehicles are required. Ground-test procedures and techniques appropriate to this class of vehicle are needed to validate new analysis methods and predictions

DelFrate, John H.↗