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NASA NTRS2002

Alternative Metrics for Evaluating the Resilence of Advanced Life Support Systems

Ensuring the safety of the crew is a key performance requirement of a life support system. However, a number of conceptual and practical difficulties arise when devising metrics to concretely measure the ability of a life support system to maintain critical functions in the presence of anticipated and unanticipated faults. Resilience is a dynamic property of a life support system that depends on the complex interactions between faults, controls and system hardware. We review some of the approaches to understanding the robustness or resilience of complex systems being developed in diverse fields such as ecology, software engineering and cell biology and discuss their applicability to regenerative life support systems. We also consider how approaches to measuring resilience vary depending on system design choices such as the definition and choice of the nominal operating regime. Finally, we explore data collection and implementation issues such as the key differences between the instantaneous or conditional and average or overall measures of resilience. Extensive simulation of a hybrid computational model of a water revitalization subsystem (WRS) with probabilistic, component-level faults provides data about off-nominal behavior of the system. The data are used to consider alternative measures of resilience as predictors of the system's ability to recover from component-level faults.

Bell, Ann Maria↗

NASA NTRSDate not supplied

TPSAS-NF1676L-31944-DND

The Plum Island Estuary (PIE) in Massachusetts is New England’s largest salt marsh. This dynamic ecosystem plays an important role in the surrounding communities by providing ecosystem and social services, acting as a center for education, research, and recreation. However, marshes around the world are threatened by sea level rise. As the equilibrium between sediment supply, erosion rates, and vegetation growth is unbalanced by rising waters, marshes are liable to recede, or even drown. Because sediment is so crucial, researchers use sediment budgets as a metric to assess Plum Island Estuary’s vulnerability to rising seas; however, established data collection methods are limited in scope. The project employed five years of imagery from Landsat 8 Operational Land Imager (OLI) and three years of imagery from Sentinel-2 Multispectral Instrument (MSI), in conjunction with in situ data, to generate and refine a local algorithm that derives suspended sediment concentration from remote sensing reflectance. This information was applied to a flux model to analyze transport patterns and possible sediment sources, particularly the Merrimack River. The use of remote sensing techniques will provide our partners at the US Geological Survey, US Fish and Wildlife Service, and Plum Island Ecosystems Long Term Ecological Research Network with higher spatial and temporal resolution data, which will allow for the development of more effective management practices.

Sydney Neugebauer↗

NASA NTRS2021

Analysis of Impacts of Terminal Restrictions on Departures in D10 TRACON

The D10 – Dallas-Fort Worth Terminal Radar Approach CONtrol (TRACON) is an air traffic facility that controls and manages aircraft and airspace that consists of multiple airports located in the North Texas area. From an air traffic management standpoint, one of the main challenges in the D10 TRACON is the departure fix capacity as multiple airports compete for resources. This problem is magnified when en route demand/capacity imbalance and inclement weather around the TRACON reduce the capacity at the terminal fixes. This leads to multiple, dynamic Traffic Management Initiative (TMI) restrictions being issued by the Air Traffic Control (ATC) on departing flights. This, in turn, propagates delay to the surface of each airport within the metroplex. The NASA Airspace Technology Demonstration 2 (ATD-2) Phase 3 is deployed in D10 to demonstrate new technologies developed to manage the Integrated Arrival, Departure, and Surface (IADS) traffic in a metroplex environment where multiple airports are interacting and sharing resources at the terminal boundary. This paper uses the ATD-2 terminal restriction data collected in the D10 TRACON to quantify the impact of restrictions on the demand, analyze the relation between terminal restrictions and departure taxi time on airport surface, and establish relationships between restrictions and surface delay. We found that the restrictions on departure flights have a direct adverse effect on departure excess taxi time on the airport surface.

ATD-2↗

NASA NTRS2021

Analysis of Impacts of Terminal Restrictions on Departures in D10 TRACON

ATD-2↗

DOE OSTI2016

Characterizing spatiotemporal information loss in sparse-sampling-based dynamic MRI for monitoring respiration-induced tumor motion in radiotherapy

Purpose: Sparse-sampling and reconstruction techniques represent an attractive strategy to achieve faster image acquisition speeds, while maintaining adequate spatial resolution and signal-to-noise ratio in rapid magnetic resonance imaging (MRI). The authors investigate the use of one such sequence, broad-use linear acquisition speed-up technique (k-t BLAST) in monitoring tumor motion for thoracic and abdominal radiotherapy and examine the potential trade-off between increased sparsification (to increase imaging speed) and the potential loss of “true” information due to greater reliance on a priori information. Methods: Lung tumor motion trajectories in the superior–inferior direction, previously recorded from ten lung cancer patients, were replayed using a motion phantom module driven by an MRI-compatible motion platform. Eppendorf test tubes filled with water which serve as fiducial markers were placed in the phantom. The modeled rigid and deformable motions were collected in a coronal image slice using balanced fast field echo in conjunction with k-t BLAST. Root mean square (RMS) error was used as a metric of spatial accuracy as measured trajectories were compared to input data. The loss of spatial information was characterized for progressively increasing acceleration factor from 1 to 16; the resultant sampling frequency was increased approximately from 2.5 to 19 Hz when the principal direction of the motion was set along frequency encoding direction. In addition to the phantom study, respiration-induced tumor motions were captured from two patients (kidney tumor and lung tumor) at 13 Hz over 49 s to demonstrate the impact of high speed motion monitoring over multiple breathing cycles. For each subject, the authors compared the tumor centroid trajectory as well as the deformable motion during free breathing. Results: In the rigid and deformable phantom studies, the RMS error of target tracking at the acquisition speed of 19 Hz was approximately 0.3–0.4 mm, which was smaller than the reconstructed pixel resolution of 0.67 mm. In the patient study, the dynamic 2D MRI enabled the monitoring of cycle-to-cycle respiratory variability present in the tumor position. It was seen that the range of centroid motion as well as the area covered due to target motion during each individual respiratory cycle was underestimated compared to the entire motion range observed over multiple breathing cycles. Conclusions: The authors’ initial results demonstrate that sparse-sampling- and reconstruction-based dynamic MRI can be used to achieve adequate image acquisition speeds without significant information loss for the task of radiotherapy guidance. Such monitoring can yield spatial and temporal information superior to conventional offline and online motion capture methods used in thoracic and abdominal radiotherapy.

60 APPLIED LIFE SCIENCES↗

NASA NTRS1997

Identification of Rotorcraft Structural Dynamics from Flight and Wind Tunnel Data

Excessive vibration remains one one of the most difficult problems that faces the helicopter industry today, affecting all production helicopters at some phase of their development. Vibrations in rotating structures may arise from external periodic dynamic airloads whose frequencies are are close to the natural frequencies of the rotating system itself. The goal for the structures engineer would thus be to design a structure as free from resonance effects as possible. In the case of a helicopter rotor blade these dynamic loads are a consequence of asymmetric airload distribution on the rotor blade in forward flight, leading to a rich collection of higher harmonic airloads that force rotor and airframe response. Accurate prediction of the dynamic characteristics of a helicopter rotor blade will provide the opportunity to affect in a positive manner noise intensity, vibration level, durability, reliability and operating costs by reducing objectionable frequencies or moving them to a different frequency range and thus providing us with a lower vibration rotor. In fact, the dynamic characteristics tend to define the operating limits of a rotorcraft. As computing power has increased greatly over the last decade, researchers and engineers have turned to analyzing the vibrational characteristics of aerospace structures at the design and development stage of the production of an aircraft. Modern rotor blade construction methods lead to products with low mass and low inherent damping so careful design and analysis is required to avoid resonance and an undesirable dynamic performance. In addition, accurate modal analysis is necessary for several current approaches in elastic system identification and active control.

McKillip, Robert M., Jr.↗

DOE OSTI2022

On the Rapid Calculation of Binding Affinities for Antigen and Antibody Design and Affinity Maturation Simulations

The accurate and efficient calculation of protein-protein binding affinities is an essential component in antibody and antigen design and optimization, and in computer modeling of antibody affinity maturation. Such calculations remain challenging despite advances in computer hardware and algorithms, primarily because proteins are flexible molecules, and thus, require explicit or implicit incorporation of multiple conformational states into the computational procedure. The astronomical size of the amino acid sequence space further compounds the challenge by requiring predictions to be computed within a short time so that many sequence variants can be tested. In this study, we compare three classes of methods for antibody/antigen (Ab/Ag) binding affinity calculations: (i) a method that relies on the physical separation of the Ab/Ag complex in equilibrium molecular dynamics (MD) simulations, (ii) a collection of 18 scoring functions that act on an ensemble of structures created using homology modeling software, and (iii) methods based on the molecular mechanics-generalized Born surface area (MM-GBSA) energy decomposition, in which the individual contributions of the energy terms are scaled to optimize agreement with the experiment. When applied to a set of 49 antibody mutations in two Ab/HIV gp120 complexes, all of the methods are found to have modest accuracy, with the highest Pearson correlations reaching about 0.6. In particular, the most computationally intensive method, i.e., MD simulation, did not outperform several scoring functions. The optimized energy decomposition methods provided marginally higher accuracy, but at the expense of requiring experimental data for parametrization. Within each method class, we examined the effect of the number of independent computational replicates, i.e., modeled structures or reinitialized MD simulations, on the prediction accuracy. We suggest using about ten modeled structures for scoring methods, and about five simulation replicates for MD simulations as a rule of thumb for obtaining reasonable convergence. We anticipate that our study will be a useful resource for practitioners working to incorporate binding affinity calculations within their protein design and optimization process.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2020

Elevation distributed micro-climatology data in a coastal glaciated watershed

Air temperature, ground temperature and relative humidity data were collected in a longitudinal transect of the Nooksack watershed at varying elevations from 500 to 1800 m above sea level. Data were collected by anchoring sensors from trees above winter snow levels and shaded from direct solar radiation. Paired sensors were also buried 3 cm under ground near each air temperature sensor to determine snow absence or presence. Select sites included relative humidity sensors to indicate whether precipitation was occurring. Data were collected every 3-4 h from December 2015 to Sept 2018 (with ongoing collection). Code for analysis of daily mean, minimum, maximum, and temperature change with elevation (lapse rates) are available on Github (https://doi.org/10.5281/zenodo.3239539). The sensor download and intermediate data products are available on HydroShare at (http://www.hydroshare.org/resource/222e832d3df24dea9bae9bbeb6f4219d) with publicly accessible visualization available from the Nooksack Observatory at data.cuahsi.org. Hydrologic models are generally structured with a single annual average lapse rate parameter which assumes a linear temperature gradient with elevation. The daily data (2016-2018) is used as part of ongoing studies on the non-linear dynamics and temporal variability of temperature with elevation to improve assessments of watershed function and salmon habitat.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2019

A C++ TPSA/DA Library with Python Wrapper

Truncated power series algebra (TPSA) or differential algebra (DA) is often used by accelerator physicists to generate a transfer map of a dynamic system. The map then can be used in dynamic analysis of the system or in particle tracking study. TPSA/DA can also be used in some fast algorithms, eg. the fast multipole method, for collective effect simulation. This paper reports a new TPSA/DA library written in C++. This library is developed based on Dr. Lingyun Yang?s TPSA code, which has been used in MAD-X and PTC. Compared with the original code, the updated version has the following changes: (1) The memory management has been revised to improve the efficiency; (2) A new data type of DA vector is defined and supported by most frequently used operators; (3) Support of inverse trigonometric functions and hyperbolic functions for the DA vector has been added; (4) function composition is revised for better efficiency; (5) a python wrapper is provided. The code is hosted at github and available to the public.

Zhang, Y.↗

NASA NTRS1986

Airborne Thermal Infrared Multispectral Scanner (TIMS) images over disseminated gold deposits, Osgood Mountains, Humboldt County, Nevada

The U.S. Geological Survey (USGS) acquired airborne Thermal Infrared Multispectral Scanner (TIMS) images over several disseminated gold deposits in northern Nevada in 1983. The aerial surveys were flown to determine whether TIMS data could depict jasperoids (siliceous replacement bodies) associated with the gold deposits. The TIMS data were collected over the Pinson and Getchell Mines in the Osgood Mountains, the Carlin, Maggie Creek, Bootstrap, and other mines in the Tuscarora Mountains, and the Jerritt Canyon Mine in the Independence Mountains. The TIMS data seem to be a useful supplement to conventional geochemical exploration for disseminated gold deposits in the western United States. Siliceous outcrops are readily separable in the TIMS image from other types of host rocks. Different forms of silicification are not readily separable, yet, due to limitations of spatial resolution and spectral dynamic range. Features associated with the disseminated gold deposits, such as the large intrusive bodies and fault structures, are also resolvable on TIMS data. Inclusion of high-resolution thermal inertia data would be a useful supplement to the TIMS data.

Krohn, M. Dennis↗

NASA NTRS1987

Optical measurements pertaining to Space Station solar dynamic power systems

The Space Station solar dynamic power system is a hybrid of solar photovoltaic and solar dynamic systems, the latter of which uses a parabolic reflector to collect solar energy. This paper describes analytical results of an off-axis solar illumination on the intensity distribution in arbitrary target planes perpendicular to the axis of a parabolic reflector. Such computational capability would make it possible to predict optical intensity distributions resulting from off-axis angles of incident radiation on such target planes. To validate the computer code, experimental optical measurements were performed on the multifaceted paraboloidal collecor at the Solar Dynamic Test Facility at Rockedyne's Santa Susana Field Laboratory. The experimental data compared reasonably well with the calculated values.

Holly, S.↗

NASA NTRS1988

Observations of stratospheric source gas profiles during the Arctic winter

An international campaign was performed at ESRANGE rocket base, near Kiruna, Sweden (68 N) from January 4 to February 15 in order to investigate the Chemistry of Ozone in the Polar Stratosphere (CHEOPS). Within the framework of this campaign two sets of large stratospheric air samples were collected by means of a balloon borne cryogenic air sampler. The two balloons were launched on February 1, and February 10, 1988. At present the samples are analyzed in our laboratory for their contents of several long lived trace gases such as CH4, N2O, H2, CO2, CO and the major halocarbons CH3Cl, CFCl3, CF2Cl2, CCl4, CH3CCl3, and C2F3Cl3. The vertical profiles derived from these samples will be presented and compared with previous observations made in February 1987. The data will be discussed in view of the dynamical evolution of the Arctic polar vortex during this winter.

Schmidt, U.↗

NASA NTRS1992

Spacelab J: Microgravity and life sciences

Spacelab J is a joint venture between NASA and the National Space Development Agency of Japan (NASDA). Using a Spacelab pressurized long module, 43 experiments will be performed in the areas of microgravity and life sciences. These experiments benefit from the microgravity environment available on an orbiting Shuttle. Removed from the effects of gravity, scientists will seek to observe processes and phenomena impossible to study on Earth, to develop new and more uniform mixtures, to study the effects of microgravity and the space environment on living organisms, and to explore the suitability of microgravity for certain types of research. Mission planning and an overview of the experiments to be performed are presented. Orbital research appears to hold many advantages for microgravity science investigations, which on this mission include electronic materials, metals and alloys, glasses and ceramics, fluid dynamics and transport phenomena, and biotechnology. Gravity-induced effects are eliminated in microgravity. This allows the investigations on Spacelab J to help scientists develop a better understanding of how these gravity-induced phenomena affect both processing and products on Earth and to observe subtle phenomena that are masked in gravity. The data and samples from these investigations will not only allow scientists to better understand the materials but also will lead to improvements in the methods used in future experiments. Life sciences research will collect data on human adaptation to the microgravity environment, investigate ways of assisting astronauts to readapt to normal gravity, explore the effects of microgravity and radiation on living organisms, and gather data on the fertilization and development of organisms in the absence of gravity. This research will improve crew comfort and safety on future missions while helping scientists to further understand the human body.

Source record↗

NASA NTRS1995

Solar wind eddies and the heliospheric current sheet

Ulysses has collected data between 1 and 5 AU during, and just following solar maximum, when the heliospheric current sheet (HCS) can be thought of as reaching its maximum tilt and being subject to the maximum amount of turbulence in the solar wind. The Ulysses solar wind plasma instrument measures the vector velocity and can be used to estimate the flow speed and direction in turbulent 'eddies' in the solar wind that are a fraction of an astronomical unit in size and last (have either a turnover or dynamical interaction time of) several hours to more than a day. Here, in a simple exercise, these solar wind eddies at the HCS are characterized using Ulysses data. This character is then used to define a model flow field with eddies that is imposed on an ideal HCS to estimate how the HCS will be deformed by the flow. This model inherently results in the complexity of the HCS increasing with heliocentric distance, but the result is a measure of the degree to which the observed change in complexity is a measure of the importance of solar wind flows in deforming the HCS. By comparison with randomly selected intervals not located on the HCS, it appears that eddies on the HCS are similar to those elsewhere at this time during the solar cycle, as is the resultant deformation of the interplanetary magnetic field (IMF). The IMF deformation is analogous to what is often termed the 'random walk' of interplanetary magnetic field lines.

Suess, S. T.↗

DOE OSTI2015

Genetic Control of Plant Root Colonization by the Biocontrol agent, Pseudomonas fluorescens

Plant growth promoting rhizobacteria (PGPR) are a critical component of plant root ecosystems. PGPR promote plant growth by solubilizing inaccessible minerals, suppressing pathogenic microorganisms in the soil, and directly stimulating growth through hormone synthesis. Pseudomonas fluorescens is a well-established PGPR isolated from wheat roots that can also colonize the root system of the model plant, Arabidopsis thaliana. We have created barcoded transposon insertion mutant libraries suitable for genome-wide transposon-mediated mutagenesis followed by sequencing (TnSeq). These libraries consist of over 105 independent insertions, collectively providing loss-of-function mutants for nearly all genes in the P.fluorescens genome. Each insertion mutant can be unambiguously identified by a randomized 20 nucleotide sequence (barcode) engineered into the transposon sequence. We used these libraries in a gnotobiotic assay to examine the colonization ability of P.fluorescens on A.thaliana roots. Taking advantage of the ability to distinguish individual colonization events using barcode sequences, we assessed the timing and microbial concentration dependence of colonization of the rhizoplane niche. These data provide direct insight into the dynamics of plant root colonization in an in vivo system and define baseline parameters for the systematic identification of the bacterial genes and molecular pathways using TnSeq assays. Having determined parameters that facilitate potential colonization of roots by thousands of independent insertion mutants in a single assay, we are currently establishing a genome-wide functional map of genes required for root colonization in P.fluorescens. Importantly, the approach developed and optimized here for P.fluorescens>A.thaliana colonization will be applicable to a wide range of plant-microbe interactions, including biofuel feedstock plants and microbes known or hypothesized to impact on biofuel-relevant traits including biomass productivity and pathogen resistance.

Cole, Benjamin J.↗

DOE OSTI2020

Study of Heavy Flavor Mesons and Flavor-Tagged Jets with the CMS Detector

The goal of this research program is to implement heavy flavor meson triggers in heavy-ion collisions for the Compact Muon Solenoid (CMS) experiment at the Large Hadron Collider (LHC) at CERN, including algorithm design, timing studies, offline validation, and online performance monitoring. The physics analyses which can be achieved by data from these new triggers is to address one of the most important questions in the field: parton flavor dependence of jet-quenching for the understanding of the transport properties of the Quark-Gluon Plasma. This program will allow CMS to collect the highest statistics heavy flavor meson and jet data ever recorded in heavy-ion colliders. The program includes two objectives: (1) Build and maintain the heavy flavor meson and jet triggers for heavy-ion collisions and deploy the trigger algorithms for 2015-2018 PbPb and pPb run at the LHC; (2) Perform heavy flavor meson and jet physics analyses, which can be used to study the parton flavor dependence of jet quenching, to extract the elastic energy loss coefficient of the QGP, and to test whether massive quarks also participate in collective expansion dynamics in heavy-ion collisions. With the heavy flavor physics trigger developed in this project, a competitive heavy flavor physics program in heavy-ion collisions has been established in CMS. This program allows studies of the fully reconstructed and flavor identified charm, beauty, and exotic hadrons that cover the widest transverse momentum range. The novel measurements supported by the award provide new constraints on the size of the flavor dependence of parton energy loss, the value of the in-medium charm quark diffusion coefficient, the mechanism of charm and beauty quark hadronization, and provide new insights to the nature of the X(3872) hadron.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

NASA NTRS1986

Near-field testing of the 5-meter model of the tetrahedral truss antenna

This report documents the technical results from near-field testing of the General Dynamics 5-meter model of the tetrahedral truss antenna at the Martin Marietta Denver Aerospace facility. A 5-meter square side of the tetrahedral served as the perimeter of the antenna, and a mesh surface and extensive surface contouring cord network was used to create a parabolic aperture shape to within an rms accuracy of 30 mils or better. Pattern measurements were made with offset feed systems radiating at frequencies of 7.73, 11.60, 2.27, and 4.26 (all in GHz). This report discusses the method of collecting the data, system measurement accuracy, the test data compiled, and diagostics and isolation of causes of pattern results. The technique of using near-field phase for measuring surface mechanical tolerances is included. Detailed far field antenna patterns and their implications are provided for all tests conducted.

Kefauver, Neill↗

NASA NTRSDate not supplied

ICE-RASSOR: Intelligent Capabilities Enhanced Regolith Advanced Surface Systems Operations Robot

NASA’s Regolith Advanced Surface Systems Operations Robot (RASSOR) is principally designed to mine and deliver regolith for In-Situ Resource Utilization (ISRU)processing. RASSOR’s design enables it to efficiently collect and deposit regolith, return collected material for processing, and myriad related ISRU activities. To reliably perform these operations on the lunar surface, RASSOR software and sensory systems need to be robust and maximize the information extracted from a reduced sensor payload. Herein, we present preliminary findings from the Intelligent Capabilities Enhanced RASSOR project. We apply supervised learning using real data to estimate the soil mass collected without the need for mass flow rate monitors or other explicate sensing techniques. We also create a reduced-order simulation environment to develop autonomous trenching controllers via reinforcement learning and prototype state estimation architectures. Our initial results suggest that excavated regolith mass can be inferred within 2.9% RMS error of full scale, and reinforcement learning for autonomous operations has learned viable trenching strategies and helped identify desirable sensing capabilities, arrangements, and considerations. Future work includes regolith mass estimation during dynamic operation, expanding our simulation to more complex environments, and transfer learning from simulation to hardware.

machine learning↗