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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.
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The software was developed to solve the problem of continuous validation for genome-scale model of S. elongatus. The origin of the work was due to the difficulty of curating genome-scale metabolic models, and memote was invented to solve this problem.
Network Optimization and Causal Analysis of Perturb-seq (NOCAP) is a software package for causal inference of gene regulation networks using data from perturb-seq.
Using the genome annotation as input, Pathway-tools generates a database containing all the information that can be inferred from the genome. The Pathway/Genome database (PGDB) can subsequently be curated manually Licensed under the CC-BY-4.0 license
Using the genome annotation as input, Pathway-tools generates a database containing all the information that can be inferred from the genome. The Pathway/Genome database (PGDB) can subsequently be curated manually
Using the genome annotation as input, Pathway-tools generates a database containing all the information that can be inferred from the genome. The Pathway/Genome database (PGDB) can subsequently be curated manually. Licensed under the CC-BY-4.0 license
Organism-specific Pathway/Genome databases enable the analysis, visualization and interrogation of metabolism, regulation, and genetics. Licensed under the CC-BY-4.0 license
R package for the relative quantitation of proteoforms with MS2 fragmentation patterns
The SODA-Benchmarks repository (currently hosted at: https://gitlab.pnnl.gov/sodalite/soda-benchmarks) provides a comprehensive benchmark suite for evaluating tools within the SODA (Software-Defined Accelerators) toolchain, which focuses on hardware/software co-design and accelerator generation for FPGAs and ASICs
The OpenStudio Building Energy Standards Measure Repository is a comprehensive collection of innovative OpenStudio measures designed to facilitate energy code analysis. OpenStudio is a cutting-edge platform brings together physics-based building energy modeling (BEM), BEM process automation, and large-scale computing capabilities. Contains OpenStudio Standards Performance Rating Method Measure (IPID 32936) and OpenStudio Measure to Generate IPLV-specific Chiller Performance Curves for Chillers (IPID 32940)
Repo for the TIMED project code
Four (4) ML models that are trained on compounds with known experimental UV-Vis spectra.
This compiler for ARTS (CARTS) is framework designed to connect a high productive languages with a distributed fine grained runtime that run effectively across clusters. It is built using MLIR and the LLVM infrastructure and it can be used as a platform to test static analysis ideas mapped towards distributed environments with novel technologies
ChemReasoner - Catalyst Discovery via Large Language Model-driven Reasoning
2025 Advancing Understanding of Land-Atmosphere Interactions and Processes on S2S Predictability Workshop What: 227 registered workshop participants gathered in person (43%) and online (57%) to discuss state-of-the-art scientific understanding and modeling of land-atmosphere interactions and related processes in the context of subseasonal-to-seasonal (S2S) predictability. Topics covered sources of S2S predictability, land model initialization methods, model diagnosis and evaluation metrics, AI/ML analysis and applications, and coordination of future community multi-model S2S forecast focused experiments. To advance the science, this community workshop, organized by NSF NCAR, NOAA, NASA, and DOE, aimed to 1) identify process- and application-oriented metrics for assessing S2S prediction skill and 2) develop experimental protocols for coordinated experiments to isolate, quantify, and understand the role of land-atmosphere interactions in S2S predictability. When: June 16-18, 2025 Where: Boulder, CO, USA, and online.
The present study explores the mechanism governing wintertime (November–April) precipitation over the Arabian Peninsula (AP) using a 17-yr-long (2002–18) high-resolution WRF simulation. The composite analysis of strong precipitation events suggests that the equatorward extension of the upper-level jet together with the embedded upper-level trough creates a positive (cyclonic) midlevel vorticity and subsequently generates an anomalous lower-level convergence through Ekman pumping. This leads to the development of an anomalous surface low, which is further enhanced in the presence of the existing Red Sea trough over the AP. This surface low weakens the persistent anticyclone over the AP, shifting it further eastward to the Arabian Sea. The eastward shift in the lower-level anticyclone contributes to the transport of warm, moist air from the Arabian Sea and the Red Sea toward the AP. This warm, moist air converges with the cold and dry air advected by the midlatitude jet and creates a moisture convergence zone, leading to the initiation of convection. We test the proposed mechanism through numerical experiments with modified upper-level wind and demonstrate that a strong, southward intrusion of the jet can indeed lead to precipitation over the AP. The above mechanism also explains the interannual variability of precipitation over the AP. During wet years, we notice approximately 3 m s -1 stronger jet core magnitude and about a 2° equatorward shift of the jet compared to dry years. While the equatorward extension of the jet explains about 21% of the interannual variability, the jet magnitude explains around 7% of the variability during wet years.
The microphysical impacts of aerosol particles on scattered isolated deep convective cells near Houston, Texas, on 19 June 2013, are examined using multiple cloud-resolving model (CRM) simulations initialized with vertical profiles of low and high concentrations of cloud droplet–nucleating aerosols. These simulations formed part of the Model Intercomparison Project (MIP) conducted by the Deep Convective Working Group of the Aerosol, Cloud, Precipitation and Climate (ACPC) initiative. Each CRM generated a field of convective cells representing those observed during the case study with varying degrees of accuracy. The Tracking and Object-Based Analysis of Clouds (tobac) cell-tracking algorithm was applied to each MIP CRM simulation to track relatively long-lived convective cells (20–60 min). Most of the CRMs produced similar aerosol loading impacts on the warm phase of tracked cell properties with reduced autoconversion and accretion growth of rain, increased cloud water, reduced rainfall, and reduced near-surface evaporation of rain. The sign of aerosol impacts on the warm-phase properties of the convective cells was also quite consistent over cell lifetimes with the greatest magnitude of influence in the first half of the life cycle in most CRMs. In contrast, the ice-phase response to aerosol loading was highly variable among CRMs and included increases or decreases in ice amounts at inconsistent stages of the cell life cycle and midlevel versus upper-level changes in ice. This intermodel variability in ice is indicative both of the complex indirect interactions between aerosols and ice-phase processes in deep convection and their associated parameterizations.
Despite rising global-mean temperatures, large parts of the Southern Ocean and tropical eastern Pacific Ocean have cooled during the satellite era. These regions may be linked by teleconnections, with Southern Ocean cooling contributing to tropical eastern Pacific cooling. We demonstrate that, on average, state-of-the-art Earth system models (ESMs) underestimate the magnitude of interaction between the Southern Ocean and tropical eastern Pacific Ocean. The strength of the teleconnection is shown to be mediated by the magnitude of the positive cloud–sea surface temperature (SST) feedback in the subtropical eastern Pacific Ocean and the strength of the wind–evaporation–SST (WES) feedback. We link excessive precipitation in the tropical Pacific south of the equator to the strength of the Southern Ocean–eastern Pacific teleconnection. This model bias, known as the double intertropical convergence zone (ITCZ), is shown to be related to erroneous convection south of the equator, weakened cross-equatorial trade winds, and unfavorable meteorological conditions for marine boundary layer subtropical clouds. We postulate there is a two-way interaction, in which a double-ITCZ occurs with weaker cloud–SST and WES feedbacks, which in turn impact local SSTs and amplify the double-ITCZ. Models with a stronger Southern Ocean to tropical Pacific teleconnection tend to exhibit more multidecadal variability in the Walker circulation, ITCZ, and west–east equatorial SST gradient, as well as greater delayed warming in the tropical eastern Pacific Ocean resulting from delayed Southern Ocean warming under greenhouse gas forcing. These results provide insight into why ESMs struggle to replicate observed tropical Pacific temperature trend patterns and point to ITCZ location as a key target for improvement in future model development.