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At least 1,729 records · Page 96

Substrate, temperature, and geographical patterns among nearly 2000 natural yeast isolates

Yeasts have broad importance as industrially and clinically relevant microbes and as powerful models for fundamental research, but we are only beginning to understand the roles yeasts play in natural ecosystems. Yeast ecology is often more difficult to study compared to other, more abundant microbes, but growing collections of natural yeast isolates are beginning to shed light on fundamental ecological questions. In this work, we used environmental sampling and isolation to assemble a dataset of 1962 isolates collected from throughout the contiguous United States of America (USA) and Alaska, which were then used to uncover geographic patterns, along with substrate and temperature associations among yeast taxa. We found some taxa, including the common yeasts Torulaspora delbrueckii and Saccharomyces paradoxus, to be repeatedly isolated from multiple sampled regions of the USA, and we classify these as broadly distributed cosmopolitan yeasts. A number of yeast taxon-substrate associations were identified, some of which were novel and some of which support previously reported associations. Further, we found a strong effect of isolation temperature on the phyla of yeasts recovered, as well as for many species. We speculate that substrate and isolation temperature associations reflect the ecological diversity of and niche partitioning by yeast taxa.

59 BASIC BIOLOGICAL SCIENCES↗

Finding Hidden Patterns in High Resolution Wind Flow Model Simulations

Wind flow data is critical in terms of investment decisions and policy making. High resolution data from wind flow model simulations serve as a supplement to the limited resource of original wind flow data collection. Given the large size of data, finding hidden patterns in wind flow model simulations are critical for reducing the dimensionality of the analysis. In this work, we first perform dimension reduction with two autoencoder models: the CNN-based autoencoder (CNN-AE) [1], and hierarchical autoencoder (HIER-AE) [2], and compare their performance with the Principal Component Analysis (PCA). We then investigate the super-resolution of the wind flow data. By training a Generative Adversarial Network (GAN) with 300 epochs, we obtained a trained model with 2× resolution enhancement. We compare the results of GAN with Convolutional Neural Network (CNN), and GAN results show finer structure as expected in the data field images. Also, the kinetic energy spectra comparisons show that GAN outperforms CNN in terms of reproducing the physical properties for high wavenumbers and is critical for analysis where high-wavenumber kinetics play an important role.

97 MATHEMATICS AND COMPUTING↗

Imaging post-stereotactic body radiation therapy responses for hepatocellular carcinoma: typical imaging patterns and pitfalls

Stereotactic body radiation therapy (SBRT) has increased utility in the management of hepatocellular carcinoma (HCC) ranging from local therapy in early-stage HCC not suitable for other focal therapies to end-stage HCC. As the indications for the use of SBRT in HCC expand, diagnostic imaging is being increasingly used to assess response to treatment. The imaging features of tumor response do not parallel those of other focal therapies such as radiofrequency ablation or trans-arterial chemoembolization that immediately devascularize the tumor. The tumor response to SBRT on imaging takes much longer and often shows gradual changes including the reduction of enhancement and size over several months. It is essential to recognize the typical imaging patterns of response, as well as the appearance of focal liver reaction in the non-target liver that can confound image interpretation. The timing of treatment response assessment imaging is fundamental to minimize the potential for false negative response. The purpose of this article is to review the variable post-SBRT imaging features of HCC and adjacent liver parenchyma and discuss the potential pitfalls of imaging evaluation after SBRT for HCC.

62 RADIOLOGY AND NUCLEAR MEDICINE↗

Pattern of Retained Contrast on Immediate Postprocedure Computed tomography (CT) After Particle Embolization of Liver Tumors Predicts Subsequent Treatment Response

PurposeTo determine if the pattern of retained contrast on immediate postprocedure computed tomography (CT) after particle embolization of hepatic tumors predicts modified Response Evaluation Criteria in Solid Tumors (mRECIST) response.Materials and MethodsThis study was approved by the Institutional Review Board with a waiver of authorization. One hundred four liver tumors were embolized with spherical embolic agents (Embospheres, Bead Block, LC Bead) and polyvinyl alcohol. Noncontrast CT was performed immediately after embolization to assess contrast retention in the targeted tumors, and treatment response was assessed by mRECIST criteria on follow-up CT (average time 9.0 {+-} 7.7 weeks after embolization). Tumor contrast retention (TCR) was determined based on change in Hounsfield units (HUs) of the index tumors between the preprocedure and immediate postprocedure scans; vascular contrast retention (VCR) was rated; and defects in contrast retention (DCR) were also documented. The morphology of residual enhancing tumor on follow-up CT was described as partial, circumferential, or total. Association between TCR variables and tumor response were assessed using multivariate logistic regression.ResultsOf 104 hepatic tumors, 51 (49 %) tumors had complete response (CR) by mRECIST criteria; 23 (22.1 %) had partial response (PR); 21 (20.2 %) had stable disease (SD); and 9 (8.7 %) had progressive disease (PD). By multivariate analysis, TCR, VCR, and tumor size are independent predictors of CR (p = 0.02, 0.05, and 0.005 respectively). In 75 tumors, DCR was found to be an independent predictor of failure to achieve complete response (p < 0.0001) by imaging criteria.ConclusionTCR, VCR, and DCR on immediate posttreatment CT are independent predictors of CR by mRECIST criteria.

62 RADIOLOGY AND NUCLEAR MEDICINE↗

Reconstruction of the springtime East Asian Subtropical Jet and Western Pacific pattern from a millennial-length Taiwanese tree-ring chronology

The East Asian subtropical jet (EAJ) and the closely related Western Pacific pattern (WP) are among the most important features in global atmospheric dynamics, but little is known about their long-term variability. This study presents reconstructions of the Spring EAJ index (EAJI) and the Spring WP index (WPI) based on significant relationships identified between mean values for these features and a millennial length tree-ring width chronology of Chamaecyparis obtusa var. formosana, a high-mountain cloud forest species from northeastern Taiwan. Tree-ring based reconstructions of high pass filtered versions of the EAJI and WPI (EAJI 5YR and WPI 5YR) presented herein explain 42 and 31 % of the WPI 5YR and EAJI 5YR, respectively, and display acceptable reliability back to A.D. 1237. A significant trend present in the long-term variance of the reconstructed EAJI and WPI after A.D. 1860 suggests long-term increasing variability in the spring mean latitudinal placement and/or the strength/breadth of the EAJ core region near Taiwan and Japan and in the trajectory of the EAJ over the North Pacific. Related features affected by changes in the EAJ include the North Pacific storm track and Asian Dust transport.

Meteorology & Atmospheric Sciences↗

Spatial–temporal changes in potential evaporation patterns based on the Cloud model and their possible causes

It is of importance to comprehensively investigate the spatial-temporal changes in potential evaporation patterns, which helps guide the long-term water resource allocation and irrigation managements. In this study, the Cloud model was adopted to quantify the average, uniformity, and stability of annual potential evaporation in the Wei River Basin (WRB), a typical arid and semi-arid region in China.. The cross wavelet analysis was then applied to explore the correlations between potential evaporation and Arctic Oscillation (AO)/El Niño Southern Oscillation (ENSO) with an aim to determine the possible causes of potential evaporation variations. Results indicated that: (1) the average of annual potential evaporation in the WRB first declined and then increased, which was similar with its stability, whilst its dispersion degree exhibited a decreasing trend, implying that potential evaporation has a small inter-annual variation; (2) the average of potential evaporation in the western basin was obviously smaller than that in the other areas, while its uniformity and stability in the Guanzhong plain and the Loess Plateau areas are larger than those in other areas, particularly in the western basin where the uniformity and stability are the smallest; (3) both AO and ENSO exhibited strong correlations with potential evaporation variations, indicating that both AO and ENSO have played an important role in the annual potential evaporation variations in the WRB.

54 ENVIRONMENTAL SCIENCES↗

Examination of climatological wind patterns and simulated pollen dispersion in a complex island environment

Complex terrain creates small-scale circulations which affect pollen dispersion but may be missed by meteorological observing networks and coarse-grid meteorological models. On volcanic islands, these circulations result from differing rates of surface heating between land and sea as well as rugged terrain. We simulated the transport of bentgrass, ryegrass, and maize pollen from 30 sources within the agricultural regions of the Hawaiian island Kaua’i during climatological conditions spanning season conditions and the La Niña, El Niño, and neutral phases of the El Niño-Southern Oscillation. Both pollen size and source location had major effects on predicted dispersion over and near the island. Three patterns of pollen dispersion were identified in response to prevailing wind conditions: southwest winds transported pollen inland, funneling pollen grains through valleys; east winds transported pollen over the ocean, with dispersive tails for the smallest pollen grains following the mean wind and extending as far as the island of Ni’ihau 35 km away; and northeast winds moved pollen inland counter to the prevailing flow due to a sea breeze circulation that formed over the source region. These results are the first to predict the interactions between complex island terrain and local climatology on grass pollen dispersion. As a result, they demonstrate how numerical modeling can provide guidance for field trials by illustrating the common flow regimes present in complex terrain, allowing field trials to focus on areas where successful sampling is more likely to occur.

54 ENVIRONMENTAL SCIENCES↗

Semi-automatic Methods for Airway and Adjacent Vessel Measurement in Bronchiectasis Patterns in Lung HRCT Images of Cystic Fibrosis Patients

Airway and vessel characterization of bronchiectasis patterns in lung high-resolution computed tomography (HRCT) images of cystic fibrosis (CF) patients is very important to compute the score of disease severity. We propose a hybrid and evolutionary optimized threshold and model-based method for characterization of airway and vessel in lung HRCT images of CF patients. First, the initial model of airway and vessel is obtained using the enhanced threshold-based method. Then, the model is fitted to the actual image by optimizing its parameters using particle swarm optimization (PSO) evolutionary algorithm. The experimental results demonstrated the outperformance of the proposed method over its counterpart in R-squared, mean and variance of error, and run time. Moreover, the proposed method outperformed its counterpart for airway inner diameter/vessel diameter (AID/VD) and airway wall thickness/vessel diameter (AWT/VD) biomarkers in R-squared and slope of regression analysis.

62 RADIOLOGY AND NUCLEAR MEDICINE↗

Algorithmic Patterns for $$\mathcal {H}$$-Matrices on Many-Core Processors

In this work, we consider the reformulation of hierarchical ( \(\mathcal {H}\) ) matrix algorithms for many-core processors with a model implementation on graphics processing units (GPUs). \(\mathcal {H}\) matrices approximate specific dense matrices, e.g., from discretized integral equations or kernel ridge regression, leading to log-linear time complexity in dense matrix–vector products. The parallelization of \(\mathcal {H}\) matrix operations on many-core processors is difficult due to the complex nature of the underlying algorithms. While previous algorithmic advances for many-core hardware focused on accelerating existing \(\mathcal {H}\) matrix CPU implementations by many-core processors, we here aim at totally relying on that processor type. As main contribution, we introduce the necessary parallel algorithmic patterns allowing to map the full \(\mathcal {H}\) matrix construction and the fast matrix–vector product to many-core hardware. In this work, crucial ingredients are space filling curves, parallel tree traversal and batching of linear algebra operations. The resulting model GPU implementation hmglib is the, to the best of the authors knowledge, first entirely GPU-based Open Source \(\mathcal {H}\) matrix library of this kind. We investigate application examples as present in kernel ridge regression, Gaussian Process Regression and kernel-based interpolation. In this context, an in-depth performance analysis and a comparative performance study against a standard multi-core CPU \(\mathcal {H}\) matrix library highlights profound speedups of our many-core parallel approach.

97 MATHEMATICS AND COMPUTING↗

Transverse Tunable Magneto-Plasmonic Kerr Effect in Large Area Micro-Patterned Au/Co/Au Structures

By sputtering the sequence of Au/Co/Au layers on ordered microspheres, two-dimensional plasmonic arrays with sufficient angular tunability and enhanced transverse magneto-plasmonic Kerr effect are fabricated. For confirmation of enhanced optical properties, we simulated the fabricated sample using the finite difference time domain method. In order to investigate the effect of rotation speed on the anisotropy of the samples and their magneto-plasmonic responses, these patterned structures are fabricated under dissimilar holder rotation speeds for inner cobalt layer deposition (i.e., Au (10 rpm)/Co (30 rpm)/Au (10 rpm) and Au (10 rpm)/Co (10 rpm)/Au (10 rpm) structures). Our results show that the transverse magneto-plasmonic Kerr effect measurements can provide unique and useful information about the structure and quality of the fabricated samples. In addition, the ability of the samples as a tunable magnetic field sensor has been investigated.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Investigation of the Branching of Solutions of the Problems of Synthesis of Radiating Systems with Flat Aperture According to a Given Amplitude Directivity Pattern

We continue our investigation of the nonuniqueness of solutions in the problems of synthesis of radiating systems with flat apertures depending on two parameters characterizing the size of the aperture and the solid angle in which the required amplitude directivity pattern is defined. The existence and properties of the real (primary) solutions of four types are clarified. We study the problems of branching of primary solutions of the second type. In the first approximation, we determine the analytic representations of complex-valued solutions branched from a real solution and investigate their main properties. The numerical experiments are carried out to analyze the efficiency of real and branched complexvalued solutions.

97 MATHEMATICS AND COMPUTING↗

Root size and soil physicochemical properties drive microscale spatial patterns of Fe and As retention in the rice rhizosphere

Background and Aims: Radial oxygen loss from rice roots in flooded soils oxidizes and precipitates dissolved Fe(II), Mn(II), and As(III) into mixed Fe(III), Mn(III/IV), and As(V) as root plaque and in the rhizosphere soil. It is unknown how different soils and root sizes impact the spatial extent of Fe and As retention outside the root. Methods: We imaged cross-sections of 90 roots from 6 different soils using synchrotron μXRF imaging followed by k-means clustering and elliptical averaging to distinguish bulk soil, rhizosphere, plaque, and roots based on As and Fe patterns. Results: We found preferential As retention in the plaque and rhizospheres of most roots except small (< 0.45 mm) roots in silty soils with low P or high As. In contrast, clayey soils had similar As-Fe correlations across plaque, rhizosphere, and bulk soil. Large (> 0.45 mm) roots often had no oxidized rhizosphere region. We obtained an extensive dataset of 256 As and 155 Mn synchrotron μXANES measurements, which revealed that rhizosphere and plaque As was mainly inorganic As(V) and As(III), and Mn oxidation state varied between soils but not between belowground locations. Conclusion: Small roots in coarse-textured soils were less likely to have As retention in the plaque or rhizosphere compared to large roots and fine-textured soils. Furthermore, the unique and extensive data in this study provides new insight into soil and root size impacts on As retention in the rhizosphere. It is essential to investigate a representative number of samples to draw conclusions from XRF imaging.

36 MATERIALS SCIENCE↗

Accounting for Melt Flow Pattern and Solid Fraction Evolution in DC Casting of Al-Cu Alloy Using v{sup 2}−f Turbulence Model

Experimental techniques remain reliable approaches for investigating the effects of parameters of the direct chill (DC) casting process on macrosegregation, grain structure formation, and surface quality. However, experimental analysis methods of these effects are expensive and can often prove difficult to implement. Understanding of the complex physics of the solidification process remains limited, and this makes it indispensable to use accurate numerical modeling tools as a complement to experiments. Numerical modeling without consideration of turbulent flow is unsuitable for application to solidification occurring during DC casting, since significant turbulent flow exists in the upper section of the cast, where the liquid pool exists. The present work employed a low-Re v{sup 2}−f turbulence model and a dual-zone solidification flow model to predict the melt flow pattern, turbulence level, sump depth, transition zone thickness, and mushy zone thickness in the DC casting of Al-Cu alloy. The obtained results provided evidence of significant damping of the flow in the slurry zone. Furthermore, results of different simulation cases revealed a narrower transition zone and shallower sump.

36 MATERIALS SCIENCE↗

Impact Damage Investigation on Glass Fiber-Reinforced Plate Laminates at Room and Lower Temperatures through Ultrasound Testing and Electronic Speckle Pattern Interferometry

In this work, the evaluation of damage area due to low-velocity impact tests at different impact energy values and different temperatures on glass fiber-reinforced plate laminates was investigated by two nondestructive evaluation (NDE) techniques, electronic speckle pattern interferometry (ESPI) and ultrasound testing (UT). Composites are characterized by several interacting failure modes such as matrix breakage, fiber failure and delaminations, which can be simultaneously induced by low-velocity impacts and can be different depending on the temperature. It can be complicated to detect by visual inspections of the structures for such phenomena. This paper aims to investigate the dependence of the damaged area with respect to temperature variation on glass fiber composite laminates. GF composite laminates were impacted with three energy levels (5, 10, 20 J) and at different temperatures (room temperature, − 25, − 50 °C) by a drop weight impact machine. The results show that at decreasing temperature, a decrease in the damage extension was observed, which is more evident at increasing impact energy. Moreover, as expected, the results confirm UT and ESPI techniques are able to identify the barely visible low-velocity impact damage. However, some limitations for detection were found in ESPI. Nonetheless, the ESPI technique can be considered as one of the useful NDE methods if the calibration and the post-processing methods are improved.

36 MATERIALS SCIENCE↗

Flow Patterns, Microstructure and Mechanical Properties of AZ31/Al6061 Dissimilar Friction Stir-Welded Joints

Dissimilar joints between die-cast AZ31 and extruded Al6061-T6 were joined using friction stir welding technology at a constant transverse speed (50 mm/min) and rotation rate of 800 or 1000 rpm. The flow patterns, microstructure evolution and intermetallic compounds in dissimilar joints were studied by optical and scanning electron microscopy. The relationship between microstructure and tensile properties was analyzed. The microhardness distribution along the horizontal centerline in cross section was investigated. Local flow without obvious mixing existed between Mg and Al metals in the tool shoulder-affected zone. For the tool-pin-affected zone, two typical zones, namely, the “extrusion zone” and “flow zone” existed because of the different flow modes of the plastic metals. The phase analysis showed that intermetallic compounds, including Al{sub 12}Mg{sub 17} and Al{sub 3}Mg{sub 2} formed in banded structures. Phase analysis showed that a joint with welding parameters of 800 rpm and 50 mm/min (Joint-500) had good mechanical properties because of the more uniform microstructure distribution and fewer intermetallic compounds. Fracture analysis indicated some microvoids and lamellate intermetallic compounds in the fracture surface of the joint with welding parameters of 1000 rpm and 50 mm/min (Joint-1000), which deteriorated its tensile strength significantly.

36 MATERIALS SCIENCE↗

Focal mass-like cardiac uptake on oncologic FDG PET/CT: Real lesion or atypical pattern of physiologic uptake?

Background: Cardiac uptake on oncologic FDG PET/CT can be unpredictable. Focal or mass-like cardiac uptake not confined to normal pattern is a real challenge for interpretation due to great variability in physiologic uptake and rarity of either primary or metastatic cardiac neoplasms. Methods and Results: Eight patients with suspicious mass-like cardiac uptake on oncologic FDG PET/CT were retrospectively analyzed with correlation to cardiac workups including contrast CT, echocardiography, and repeat PET/CT. Four patients had real cardiac lesions or metastases. Focal uptake was benign and might represent papillary muscle in the other four. SUV{sub max} ratio between the cardiac focus and surrounding background cardiac uptake was statistically higher in the true-positive group than that in the false-positive group. In addition, the patients with true-positive cardiac uptake had more diffuse distant metastases compared to those with false-positive cardiac uptake. Conclusions: Focal suspicious cardiac uptake on oncology FDG PET/CT warranted further evaluation. SUV{sub max} ratio between the cardiac focus and surrounding background cardiac uptake and status of distant metastases might help to differentiate malignant from benign nature of the focal cardiac uptake on FDG PET/CT. Focal uptake of the right ventricle on oncologic FDG PET/CT is more likely suggestive of a neoplasm.

62 RADIOLOGY AND NUCLEAR MEDICINE↗

The Characterization of Laser Ablation Patterns and a New Definition of Resolution in Matrix Assisted Laser Desorption Ionization Imaging Mass Spectrometry (MALDI-IMS)

Matrix assisted laser desorption ionization imaging mass spectrometry (MALDI-IMS) is a technique that has seen a sharp rise in both use and development. Despite this rapid adoption, there have been few thorough investigations into the actual physical mechanisms that underlie the acquisition of IMS images. We therefore set out to characterize the effect of IMS laser ablation patterns on the surface of a sample. We also concluded that the governing factors that control spatial resolution have not been correctly defined and therefore propose a new definition of resolution. .

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Improved Miniaturized Linear Ion Trap Mass Spectrometer Using Lithographically Patterned Plates and Tapered Ejection Slit

We present a new two-plate linear ion trap mass spectrometer that overcomes both performance-based and miniaturization-related issues with prior designs. Borosilicate glass substrates are patterned with aluminum electrodes on one side and wire-bonded to printed circuit boards. Ions are trapped in the space between two such plates. Tapered ejection slits in each glass plate eliminate issues with charge build-up within the ejection slit and with blocking of ions that are ejected at off-nominal angles. The tapered slit allows miniaturization of the trap features (electrode size, slit width) needed for further reduction of trap size while allowing the use of substrates that are still thick enough to provide ruggedness during handling, assembly, and in-field applications. Plate spacing was optimized during operation using a motorized translation stage. A scan rate of 2300 Th/s with a sample mixture of toluene and deuterated toluene (D8) and xylenes (a mixture of o-, m-, p-) showed narrowest peak widths of 0.33 Th (FWHM). .

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗