Engineering Papers⌕ Search

SEARCH · Engineering Papers

Results for “Base Sequence”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 1,729 records · Page 96
All sourcesNASA NTRSDOE OSTI
DOE OSTI2015

SU-E-T-602: Patient-Specific Online Dose Verification Based On Transmission Detector Measurements

Purpose: Intensity modulated radiotherapy requires a comprehensive quality assurance program in general and ideally independent verification of dose delivery. Since conventional 2D detector arrays allow only pre-treatment verification, there is a debate concerning the need of online dose verification. This study presents the clinical performance, including dosimetric plan verification in 2D as well as in 3D and the error detection abilities of a new transmission detector (TD) for online dose verification of 6MV photon beam. Methods: To validate the dosimetric performance of the new device, dose reconstruction based on TD measurements were compared to a conventional pre-treatment verification method (reference) and treatment planning system (TPS) for 18 IMRT and VMAT treatment plans. Furthermore, dose reconstruction inside the patient based on TD read-out was evaluated by comparing various dose volume indices and 3D gamma evaluations against independent dose computation and TPS. To investigate the sensitivity of the new device, different types of systematic and random errors for leaf positions and linac output were introduced in IMRT treatment sequences. Results: The 2D gamma index evaluation of transmission detector based dose reconstruction showed an excellent agreement for all IMRT and VMAT plans compared to reference measurements (99.3±1.2)% and TPS (99.1±0.7)%. Good agreement was also obtained for 3D dose reconstruction based on TD read-out compared to dose computation (mean gamma value of PTV = 0.27±0.04). Only a minimal dose underestimation within the target volume was observed when analyzing DVH indices (<1%). Positional errors in leaf banks larger than 1mm and errors in linac output larger than 2% could clearly identified with the TD. Conclusion: Since 2D and 3D evaluations for all IMRT and VMAT treatment plans were in excellent agreement with reference measurements and dose computation, the new TD is suitable to qualify for routine treatment plan verification. Funding Support, Disclosures, and Conflict of Interest: COIs: Frank Lohr: Elekta: research grant, travel grants, teaching honoraria IBA: research grant, travel grants, teaching honoraria, advisory board C-Rad: board honoraria, travel grants Frederik Wenz: Elekta: research grant, teaching honoraria, consultant, advisory board Zeiss: research grant, teaching honoraria, patent Hansjoerg Wertz: Elekta: research grant, teaching honoraria IBA: research grant.

61 RADIATION PROTECTION AND DOSIMETRY↗
DOE OSTI2018

Highly Efficient Compensation-Based Parallelism for Wavefront Loops on GPUs

Wavefront loops are widely used in many scientific applications, e.g., partial differential equation (PDE) solvers and sequence alignment tools. However, due to the data dependencies in wavefront loops, it is challenging to fully utilize the abundant compute units of GPUs and to reuse data through their memory hierarchy. Existing solutions can only optimize for these factors to a limited extent. For example, tiling-based methods optimize memory access but may result in load imbalance; while compensation-based methods, which change the original order of computation to expose more parallelism and then compensate for it, suffer from both global synchronization overhead and limited generality. In this paper, we first prove under which circumstances that breaking data dependencies and properly changing the sequence of computation operators in our compensation-based method does not affect the correctness of results. Based on this analysis, we design a highly efficient compensation-based parallelism on GPUs. Our method provides weighted scan-based GPU kernels to optimize the computation and combines with the tiling method to optimize memory access and synchronization. The performance results on the NVIDIA K80 and P100 GPU platforms demonstrate that our method can achieve significant improvements for four types of real-world application kernels over the state-of-the-art research.

Hou, Kaixi↗
DOE OSTI2020

Standardized phylogenetic and molecular evolutionary analysis applied to species across the microbial tree of life

There is growing interest in reconstructing phylogenies from the copious amounts of genome sequencing projects that target related viral, bacterial or eukaryotic organisms. To facilitate the construction of standardized and robust phylogenies for disparate types of projects, we have developed a complete bioinformatic workflow, with a web-based component to perform phylogenetic and molecular evolutionary (PhaME) analysis from sequencing reads, draft assemblies or completed genomes of closely related organisms. Furthermore, the ability to incorporate raw data, including some metagenomic samples containing a target organism (e.g. from clinical samples with suspected infectious agents), shows promise for the rapid phylogenetic characterization of organisms within complex samples without the need for prior assembly.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2015

The distances to open clusters from main-sequence fitting. V. Extension of color calibration and test using cool and metal-rich stars in NGC 6791

We extend our effort to calibrate stellar isochrones in the Johnson–Cousins (BVI{sub C}) and the 2MASS (JHK{sub s}) filter systems based on observations of well-studied open clusters. Using cool main-sequence (MS) stars in Praesepe, we define empirical corrections to the Lejeune et al. color–effective temperature (T{sub eff}) relations down to T{sub eff}∼3600 K, complementing our previous work based on the Hyades and the Pleiades. We apply empirically corrected isochrones to existing optical and near-infrared photometry of cool (T{sub eff}≲5500 K) and metal-rich ([Fe/H]= +0.37) MS stars in NGC 6791. The current methodology relies on an assumption that color–T{sub eff} corrections are independent of metallicity, but we find that estimates of color excess and distance from color–magnitude diagrams with different color indices converge on each other at the precisely known metallicity of the cluster. Along with a satisfactory agreement with eclipsing binary data in the cluster, we view the improved internal consistency as a validation of our calibrated isochrones at super-solar metallicities. For very cool stars (T{sub eff}≲4800 K), however, we find that B − V colors of our models are systematically redder than the cluster photometry by ∼0.02 mag. We use color–T{sub eff} transformations from the infrared flux method and alternative photometry to examine a potential color-scale error in the input cluster photometry. After excluding B − V photometry of these cool MS stars, we derive E(B − V)=0.105±0.014, [M/H] = +0.42±0.07, (m − M){sub 0}=13.04±0.08, and the age of 9.5 ± 0.3 Gyr for NGC 6791.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2016

Advanced SAPHIRE 8 Modeling Methods for Probabilistic Risk Assessment via the Systems Analysis Program for Hands-On Integrated Reliability Evaluations (SAPHIRE) Software P-202

1.1. Overview of the Advanced SAPHIRE Material The Advanced SAPHIRE course material is intended to both (1) provide guidance for learning advanced SAPHIRE features during the class and (2) become a stand-alone reference document after finishing the class. Thus, the format for the class material is a combination of the traditional “overhead-type” of presentation information with a structured, reference-type document. Major topics that are covered in the Advanced SAPHIRE class include: Advanced data base concepts such as Model Type (e.g., random, seismic, fire, flood). Definition of house events and how they are used on a sequence-by-sequence basis to manipulate individual fault tree logic using sequence flag sets or fault tree flag sets. ? Basic event templates, compound basic event equation editors, and human error worksheets. A rule-based event tree top event substitution feature (called the Link Event Tree Rule Editor) which allows for top event substitutions. A rule-based cut set post-processing feature (called the Recovery Rules) which allows cut set manipulation. Cut set analysis based upon rule-based end state categories (called End State Analysis). Cut set generation options for both fault trees and event tree sequences. The large event tree methodology and how SAPHIRE can be used to generate sequence cut sets for this method. The transfer of data between SAPHIRE data bases and between other PRA codes (MAR-D).

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2021

CFM-ID 4.0: More Accurate ESI MS/MS Spectral Prediction and Compound Identification

In the field of metabolomics, mass spectrometry (MS) is the method most commonly used for identifying and annotating metabolites. As this typically involves matching a given MS spectrum against an experimentally acquired reference spectral library, this approach is limited by the coverage and size of such libraries (which typically number in the thousands). These experimental libraries can be greatly extended by predicting the MS spectra of known chemical structures (which number in the millions) to create computational reference spectral libraries. To facilitate the generation of predicted spectral reference libraries we developed CFM-ID, a computer program that can accurately predict ESI-MS/MS spectrum for a given compound structure. CFM-ID is one of the best-performing methods for compound-to-mass-spectrum prediction, and also one of the top tools for in silico mass-spectrum-to-compound identification. This work improves CFM-ID’s ability to predict ESI-MS/MS spectra from compounds by: (1) learning parameters from features based on the molecular topology, (2) adding a new approach to ring cleavage that models such cleavage as a sequence of simple chemical bond dissociations and (3) expanding its hand-written rule-based predictor to cover more chemical classes, including acylcarnitines, acylcholines, flavonols, flavones, flavanones, and flavonoid glycosides. We demonstrate that this new version of CFM-ID (version 4.0) is significantly more accurate than previous CFM-ID versions, in terms of both EI-MS/MS spectral prediction and compound identification. CFM-ID 4.0 is available at http://cfmid4.wishartlab.com/ as a webservice and docker images can be downloaded at https://hub.docker.com/r/wishartlab/cfmid

Wang, Fei↗
DOE OSTI2021

Evolution of Metastable Phases During Mg Metal Corrosion: An In Situ Cryogenic X-ray Photoelectron Spectroscopy Study

Magnesium and its alloys are potential structural materials candidates for a wide variety of applications due to their high strength-to-weight ratio. However, ductility and poor corrosion resistance under ambient environmental conditions are the bottleneck for industrial deployment. Designing passivation layers and/or corrosion resistant alloys requires fundamental understanding of the corrosion process. The traditional ex-situ spectroscopic measurements of polycrystalline metal surface with ubiquitous surface impurities and grain boundaries only provided an indistinct view of the corrosion process. To clearly distinguish the mechanism and sequence of corrosion process, we employed in-situ cryo-based x-ray photoelectron spectroscopy (XPS) measurements on Mg single crystal surface exposed to aqueous salt solution. Clean Mg (0001) surfaces were exposed to pure D2O and NaCl aqueous solution (5 wt% NaCl+95 wt% D2O). The interfacial reactions were studied using multimodal analysis including XPS, x-ray diffraction (XRD) and scanning electron microscopy (SEM). In contrast to previous studies, our experiments demonstrated the formation of magnesium chloride hydroxide hydrate during aqueous salt corrosion processes. Evidence of metastable ClO* radicals were also found during the initial aqueous salt solution exposure.

Shutthanandan, Vaithiyalingam↗
DOE OSTI2020

Enabling Catalog Simulations of Transient and Variable Sources Based on LSST Cadence Strategies

The American Astronomical Society. All rights reserved.. The Large Synoptic Survey Telescope (LSST) project will conduct a 10 year multi-band survey starting in 2022. Observing strategies for this survey are being actively investigated, and the science capabilities can be best forecasted on the basis of simulated strategies from the LSST Operations Simulator (OpSim). This paper describes the way in which OpSim simulates a stochastic realization of the sequence of LSST pointings over the survey duration, and is based on a model of the observatory (including telescope) and historical data of observational conditions. OpSim outputs contain a record of each simulated pointing of the survey along with a complete characterization of the pointing in terms of observing conditions, and some useful quantities derived from the characteristics of the pointing. Thus, each record can be efficiently used to derive the properties of observations of all astrophysical sources found in that pointing. However, in order to obtain the time series of observations (light curves) of a set of sources, it is often more convenient to compute all observations of an astrophysical source, and iterate over sources. In this document, we describe the open source python package OpSimSummary, which allows for a convenient reordering. The objectives of this package are to provide users with an Application Programming Interface for accessing all such observations and summarizing this information in the form of intermediate data products usable by third party software such as SNANA, thereby also bridging the gap between official LSST products and preexisting simulation codes.

79 ASTRONOMY AND ASTROPHYSICS↗
NASA NTRS1990

An evolutionary sequence of low frequency radio astronomy missions

Many concepts for space-based low frequency radio astronomy missions are being developed, ranging from simple single-satellite experiments to large arrays on the far side of the moon. Each concept involves a different tradeoff between the range of scientific questions it can answer and the technical complexity of the experiment. Since complexity largely determines the development time, risk, launch vehicle requirements, cost, and probability of approval, it is important to see where the ability to expand the scientific return justifies a major increase in complexity. An evolutionary series of increasingly capable missions, similar to the series of missions for infrared or X-ray astronomy, is advocated. These would range from inexpensive 'piggy-back' experiments on near-future missions to a dedicated low frequency array in earth orbit (or possibly on the lunar nearside) and eventually to an array on the lunar farside.

Jones, Dayton L.↗
NASA NTRS2000

Back to the Future: Consistency-Based Trajectory Tracking

Given a model of a physical process and a sequence of commands and observations received over time, the task of an autonomous controller is to determine the likely states of the process and the actions required to move the process to a desired configuration. We introduce a representation and algorithms for incrementally generating approximate belief states for a restricted but relevant class of partially observable Markov decision processes with very large state spaces. The algorithm presented incrementally generates, rather than revises, an approximate belief state at any point by abstracting and summarizing segments of the likely trajectories of the process. This enables applications to efficiently maintain a partial belief state when it remains consistent with observations and revisit past assumptions about the process' evolution when the belief state is ruled out. The system presented has been implemented and results on examples from the domain of spacecraft control are presented.

Kurien, James↗
NASA NTRS2017

Beyond Nanopore Sequencing in Space: Identifying the Unknown

Astronaut Kate Rubins sequenced DNA on the International Space Station (ISS) for the first time in August 2016 (Figure 1A). A 2D sequencing library containing an equal mixture of lambda bacteriophage, Escherichia coli, and Mus musculus was prepared on the ground with a SQK_MAP006 kit and sent to the ISS frozen and loaded into R7.3 flow cells. After a total of 9 on-orbit sequencing runs over 6 months, it was determined that there was no decrease in sequencing performance on-orbit compared to ground controls (1). A total of ~280,000 and ~130,000 reads generated on-orbit and on the ground, respectively, identified 90% of reads that were attributed to 30% lambda bacteriophage, 30% Escherichia coli, and 30% M. musculus (Figure 1B). Extensive bioinformatics analysis determined comparable 2D and 1D read accuracies between flight and ground runs (Figure 1C), and data collected from the ISS were able to construct directed assemblies of E.coli and lambda genomes at 100% and M. musculus mitochondrial genome at 96.7%. These findings validate sequencing as a viable option for potential on-orbit applications such as environmental microbial monitoring and disease diagnosis. Current microbial monitoring of the ISS applies culture-based techniques that provide colony forming unit (CFU) data for air, water, and surface samples. The identity of the cultured microorganisms in unknown until sample return and ground-based analysis, a process that can take up to 60 days. For sequencing to benefit ISS applications, spaceflight-compatible sample preparation techniques are required. Subsequent to the testing of the MinION on-orbit, a sample-to-sequence method was developed using miniPCR™ and basic pipetting, which was only recently proven to be effective in microgravity. The work presented here details the in- flight sample preparation process and the first application of DNA sequencing on the ISS to identify unknown ISS-derived microorganisms.

Stahl, Sarah E.↗
DOE OSTI2024

Transcriptome analysis and immune gene expression of channel catfish ( Ictalurus punctatus ) fed diets with inclusion of frass from black soldier fly larvae

The larval waste, exoskeleton shedding, and leftover feed components of the black soldier fly and its larvae make up the by-product known as frass. In this study, we subjected channel catfish (Ictalurus punctatus) to a 10-week feeding trial to assess how different dietary amounts of frass inclusion would affect both systemic and mucosal tissue gene expression, especially in regard to growth and immune-related genes. Fish were divided in quadruplicate aquaria, and five experimental diets comprising 0, 50, 100, 200, and 300 g of frass per kilogram of feed were fed twice daily. At the end of the trial, liver, head kidney, gill, and intestine samples were collected for gene expression analyses. First, liver and intestine samples from fish fed with a no frass inclusion diet (control), low-frass (50 g/kg) inclusion diet, or a high-frass (300 g/kg) inclusion diet were subjected to Illumina RNA sequencing to determine global differential gene expression among diet groups. Differentially expressed genes (DEGs) included the upregulation of growth-related genes such as glucose-6-phosphatase and myostatin, as well as innate immune receptors and effector molecules such as toll-like receptor 5, apolipoprotein A1, C-type lectin, and lysozyme. Based on the initial screenings of low/high frass using RNA sequencing, a more thorough evaluation of immune gene expression of all tissues sampled, and all levels of frass inclusion, was further conducted. Using targeted quantitative PCR panels for both innate and adaptive immune genes from channel catfish, differential expression of genes was identified, which included innate receptors (TLR1, TLR5, TLR9, and TLR20A), proinflammatory cytokines (IL-1β type a, IL-1β type b, IL-17, IFN-γ, and TNFα), chemokines (CFC3 and CFD), and hepcidin in both systemic (liver and head kidney) and mucosal (gill and intestine) tissues. Overall, frass from black soldier fly larvae inclusion in formulated diets was found to alter global gene expression and activate innate and adaptive immunity in channel catfish, which has the potential to support disease resistance in this species in addition to demonstrated growth benefits.

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRS2004

Modeling Forest Understory Fires in an Eastern Amazonian Landscape

Forest understory fires are an increasingly important cause of forest impoverishment in Ammonia, but little is known of the landscape characteristics and climatic phenomena that determine their occurrence. We developed empirical functions relating the occurrence of understory fires to landscape features near Paragominas, a 35- yr-old ranching and logging center in eastern Ammonia. An historical sequence of maps of forest understory fire was created based on field interviews With local farmers and Landsat TM images. Several landscape features that might explain spatial variations in the occurrence of understory fires were also mapped and co-registered for each of the sample dates, including: forest fragment size and shape, forest impoverishment through logging and understory fires, source of ignition (settlements and charcoal pits), roads, forest edges, and others. The spatial relationship between forest understory fire and each landscape characteristic was tested by regression analyses. Fire probability models were then developed for various combinations of landscape characteristics. The analyses were conducted separately for years of the El Nino Southern Oscillation (ENSO), which are associated with severe drought in eastern Amazonia, and non-ENS0 years. Most (91 %) of the forest area that burned during the 10-yr sequence caught fire during ENSO years, when severe drought may have increased both forest flammability and the escape of agricultural management fires. Forest understory fires were associated with forest edges, as reported in previous studies from Ammonia. But the strongest predictor of forest fire was the percentage of the forest fragment that had been previously logged or burned. Forest fragment size, distance to charcoal pits, distance to agricultural settlement, proximity to forest edge, and distance to roads were also correlated with forest understory fire. Logistic regression models using information on fragment degradation and distance to ignition sources accurately predicted the location of lss than 80% of the forest fires observed during the ENSO event of 1997- 1998. In this Amazon landscape, forest understory fire is a complex function of several variables that influence both the flammability and ignition exposure of the forest.

Alencar, A. A. C.↗
DOE OSTI2021

Regulatory Treatment of Low Frequency External Events under a Risk-Informed Performance-Based Licensing Pathway

Significant efforts are underway to develop and implement a risk-informed performance-based licensing framework for advanced reactors built on the establishment of an affirmative safety case. Such approaches offer the benefits of increased flexibility regarding key design and licensing decisions based on a detailed assessment and understanding of plant risk. These methods include the comprehensive analysis of scenarios that have historically been addressed through conservative and deterministic licensing analysis approaches, such as the evaluation of event sequences at frequencies of occurrence beyond the design basis. While the detailed analysis of low frequency events provides insights that can help justify alternative treatments to past conservatism, the findings are dependent on the quality and confidence associated with the analyses. The assessment of external hazards presents a unique challenge, as their potential frequency of occurrence, especially of large magnitude events, is inherently uncertain given the long return periods in question. The current project seeks to further explore the regulatory treatment of low frequency external events as part of a risk-informed performance-based framework. The goals are to identify the benefits and challenges of such approaches for advanced reactor vendors and to aid in the development of consistent and appropriate methodologies. As part of this effort, the current report summarizes initial project findings, with a focus on the evaluation of the seismic hazard. This includes an exploration of the implementation of a risk-informed performance-based approach through an example analysis. Based on the identified challenges associated with the probabilistic treatment of low frequency event sequences, additional performance-based methods were explored as complementary tools for demonstrating regulatory compliance. The report highlights key challenges and opportunities associated with the methods and outlines recommendations and future activities to assist with their implementation.

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗
DOE OSTI2022

Supplemental Material: Cretaceous sequence stratigraphy of the northern Baltimore Canyon Trough: Implications for basin evolution and carbon storage

We focus on potential reservoirs in the Logan Canyon Formation. Based on lithostratigraphy, Libby-French originally divided the Logan Canyon sandstones into lower and upper Logan Canyon sandstone units separated by the Sable Shale equivalent. Miller et al. reinterpreted the well-log correlations with biostratigraphy using a sequence stratigraphic approach and found three distinct Logan Canyon highstand sandstones associated with three Aptian to lower Cenomanian stratigraphic sequences, the LC3, LC2, and LC1, respectively. In addition, Miller et al. found that the Sable Shale Formation identified by Libby-French was placed above and below the LC1 basal sequence boundary in some wells, highlighting issues with correlating units based only on lithology. The Upper Cretaceous strata in the BCT are termed the Dawson Canyon Equivalent Formation, correlate to the DCx composite sequence, and cap the Logan Canyon sequences below made up of a very thick, calcareous Cretaceous sequence stratigraphy mudstone, divided by a single, thick, laterally continuous Coniacian to Campanian sandstone called the Middle Sandstone.

58 GEOSCIENCES↗
DOE OSTI2023

A Modified Sequence-to-point HVAC Load Disaggregation Algorithm

This paper presents a modified sequence-to-point (S2P) algorithm for disaggregating the heat, ventilation, and air conditioning (HVAC) load from the total building electricity consumption. The original S2P model is convolutional neural network (CNN) based, which uses load profiles as inputs. We propose three modifications. First, the input convolution layer is changed from 1D to 2D so that normalized temperature profiles are also used inputs to the S2P model. Second, a drop-out layer is added to improve adaptability and generalizability so that the model trained in one area can be transferred to other geographical areas without labelled HVAC data. Third, a fine-tuning process is proposed for areas with a small amount of labelled HVAC data so that the pre-trained S2P model can be fine-tuned to achieve higher disaggregation accuracy (i.e., better transferability) in other areas. The model is first trained and tested using smart meter and sub-metered HVAC data collected in Austin, Texas. Then, the trained model is tested on two other areas: Boulder, Colorado and San Diego, California. Simulation results show that the proposed modified S2P algorithm outperforms the original S2P model and the support-vector machine based approach in accuracy, adaptability, and transferability.

Ye, Kai↗
NASA NTRS1991

Systolic array IC for genetic computation

Measuring similarities between large sequences of genetic information is a formidable task requiring enormous amounts of computer time. Geneticists claim that nearly two months of CRAY-2 time are required to run a single comparison of the known database against the new bases that will be found this year, and more than a CRAY-2 year for next year's genetic discoveries, and so on. The DNA IC, designed at HP-ICBD in cooperation with the California Institute of Technology and the Jet Propulsion Laboratory, is being implemented in order to move the task of genetic comparison onto workstations and personal computers, while vastly improving performance. The chip is a systolic (pumped) array comprised of 16 processors, control logic, and global RAM, totaling 400,000 FETS. At 12 MHz, each chip performs 2.7 billion 16 bit operations per second. Using 35 of these chips in series on one PC board (performing nearly 100 billion operations per second), a sequence of 560 bases can be compared against the eventual total genome of 3 billion bases, in minutes--on a personal computer. While the designed purpose of the DNA chip is for genetic research, other disciplines requiring similarity measurements between strings of 7 bit encoded data could make use of this chip as well. Cryptography and speech recognition are two examples. A mix of full custom design and standard cells, in CMOS34, were used to achieve these goals. Innovative test methods were developed to enhance controllability and observability in the array. This paper describes these techniques as well as the chip's functionality. This chip was designed in the 1989-90 timeframe.

Anderson, D.↗
DOE OSTI2016

DNA microstructure influences selective binding of small molecules designed to target mixed-site DNA sequences

Specific targeting of protein–nucleic acid interactions is an area of current interest, for example, in the regulation of gene-expression. Most transcription factor proteins bind in the DNA major groove; however, we are interested in an approach using small molecules to target the minor groove to control expression by an allosteric mechanism. In an effort to broaden sequence recognition of DNA-targeted-small-molecules to include both A·T and G·C base pairs, we recently discovered that the heterocyclic diamidine, DB2277, forms a strong monomer complex with a DNA sequence containing 5'-AAAGTTT-3'. Competition mass spectrometry and surface plasmon resonance identified new monomer complexes, as well as unexpected binding of two DB2277 with certain sequences. Inherent microstructural differences within the experimental DNAs were identified through computational analyses to understand the molecular basis for recognition. These findings emphasize the critical nature of the DNA minor groove microstructure for sequence-specific recognition and offer new avenues to design synthetic small molecules for effective regulation of gene-expression.

59 BASIC BIOLOGICAL SCIENCES↗