An Experience Report : Porting the MG-RAST Metagenomic Data Analysis Pipeline to the Cloud
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ABSTRACT Application performance is a function of several unknowns stemming from the interactions between the application, runtime, OS, and underlying hardware, making it challenging to model performance using deep learning techniques, especially without a large labeled dataset. Collecting such labeled longitudinal datasets can take weeks. Intuitively, developers could save analysis time during code development by taking a comparative approach between multiple applications. However, the unknown dynamic interactions between applications and execution environments make it difficult for deep learning‐based models to predict the performance of new applications. In this paper, we address these problems by presenting a labeled dataset for the community and taking a comparative analysis approach to explore the source code differences between different correct implementations of the same problem. This paper assesses the feasibility of using purely static information, for example, Abstract Syntax Tree (AST), of applications to predict performance change based on code structure. We evaluate several deep learning‐based representation learning techniques for source code and propose an architecture for the tree‐based Long Short‐Term Memory (LSTM) models to discover latent representations for a source code's hierarchical structure. We demonstrate that our proposed architecture enables feed‐forward predictive models to predict change in performance using source code with up to 84% accuracy.
Abstract Although reactive additives have been employed in perovskite solar cells to enhance film morphology and significantly increase device performance, little is known about the effect of these additives on perovskite structural and optical properties. Here we report a systematic study of how the properties of methylammonium lead iodide perovskite (CH 3 NH 3 PbI 3 ) are influenced by hydrohalic acid additives (HX; X=I, Br, Cl) in the precursor solution. Detailed structural and optical spectroscopic analysis reveals that all three acids affect the optical properties and alter the unit cell lattice parameters. Depending on the identity and concentration of HX, optical bandgaps widen or compress: addition of HBr yields a wider bandgap, whereas HI compresses the gap at high concentrations; HCl, on the other hand, has no significant effect on the bandgap. These changes can be understood by correlating them with the types of defects present in polycrystalline perovskite thin films in combination with the structural strain induced in very small crystallites. The presence of extra halides from HX in the precursor solution enables filling of the lattice vacancies in the perovskite, thereby altering metal–halogen–metal bond connectivity and consequently cell volumes and optical bandgaps. Remarkably, a room temperature tetragonal→cubic phase transition is observed for CH 3 NH 3 PbI 3 films treated with high HX concentrations. Further insights into this anomalous phase transformation are obtained from in situ variable‐temperature X‐ray diffraction in the 25–55 °C (298–328 K) range, revealing a monotonic fall in transition temperature with increasing precursor solution HX concentration.
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Abstract A series of isomeric bis(alkylthiocarbamate) copper complexes have been synthesized, characterized, and evaluated for antiproliferation activity. The complexes were derived from ligand isomers with 3‐methylpentyl (H 2 L 2 ) and cyclohexyl (H 2 L 3 ) backbone substituents, which each yield a pair of linkage isomers. The thermodynamic products CuL 2a/3a have two imino N and two S donors resulting in three five‐member chelate rings (555 isomers). The kinetic isomers CuL 2b/3b have one imino and one hydrazino N donor and two S donors resulting in four‐, six‐, and five‐member rings (465 isomers). The 555 isomers have more accessible Cu II/I potentials (E 1/2 =−811/−768 mV vs. ferrocenium/ferrocene) and lower energy charge transfer bands than their 465 counterparts (E 1/2 =−923/‐854 mV). Antiproliferation activities were evaluated against the lung adenocarcinoma cell line (A549) and nonmalignant lung fibroblast cell line (IMR‐90) using the MTT assay. CuL 2a was potent ( A549 EC 50 =0.080 μM) and selective ( IMR‐90 EC 50 / A549 EC 50 =25) for A549. Its linkage isomer CuL 2b had equivalent A549 activity, but lower selectivity ( IMR‐90 EC 50 / A549 EC 50 =12.5). The isomers CuL 3a and CuL 3b were less potent with A549 EC 50 values of 1.9 and 0.19 M and less selective with IMR‐90 EC 50 / A549 EC 50 ratios of 2.3 and 2.65, respectively. There was no correlation between reduction potential and A549 antiproliferation activity/selectivity.
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Abstract Nanophotonic devices are optical platforms capable of unprecedented wavefront control. To push the limits of experimental device performance, scalable design methodologies that combine the simplicity and fabricability of conventional design paradigms with the extended capabilities of freeform optimization are required. A novel gradient‐based design framework for large‐area freeform metasurfaces is introduced in which nonlocal interactions between simply shaped nanostructures, placed on an irregular lattice, are tailored to produce high‐order hybridized modes that support customizable large‐angle scattering profiles. Utilizing this approach, multifunctional super‐dispersive metalenses are designed and experimentally demonstrated. The approach to high‐numerical‐aperture radial metalenses capable of diffraction limited focusing and the generation of donut‐shaped point spread functions is also extended. It is anticipated that these concepts will have utility in super‐resolution microscopy, particle trapping, additive manufacturing, and metrology applications that require ultra‐high numerical apertures.
Abstract Mixed‐integer optimal control problems governed by partial differential equations (MIPDECOs) are powerful modeling tools but also challenging in terms of theory and computation. We propose a highly efficient state elimination approach for MIPDECOs that are governed by partial differential equations that have the structure of an abstract ordinary differential equation in function space. This allows us to avoid repeated calculations of the states for all time steps, and our approach is applied only once before starting the optimization. The presentation of theoretical results is complemented by numerical experiments.
Abstract Fault detection and classification in photovoltaic (PV) systems through real‐time monitoring is a fundamental task that ensures quality of operation and significantly improves the performance and reliability of operating systems. Different statistical and comparative approaches have already been proposed in the literature for fault detection; however, accurate classification of fault and loss incidents based on PV performance time series remains a key challenge. Failure diagnosis and trend‐based performance loss routines were developed in this work for detecting PV underperformance and accurately identifying the different fault types and loss mechanisms. The proposed routines focus mainly on the differentiation of failures (e.g., inverter faults) from irreversible (e.g., degradation) and reversible (e.g., snow and soiling) performance loss factors based on statistical analysis. The proposed routines were benchmarked using historical inverter data obtained from a 1.8 MWp PV power plant. The results demonstrated the effectiveness of the routines for detecting failures and loss mechanisms and the capability of the pipeline for distinguishing underperformance issues using anomaly detection and change‐point (CP) models. Finally, a CP model was used to extract significant changes in time series data, to detect soiling and cleaning events and to estimate both the performance loss and degradation rates of fielded PV systems.
ABSTRACT The effects of incorporating metal‐binding ligands as chain extenders in polyurethane elastomers were investigated. Segmented polyurethanes based on 2 kDa poly(tetramethylene oxide) (PTMO) and 4,4‐methylenebis(cyclohexyl isocyanate) were polymerized using a two‐step process in which 2,6‐bis(1‐ethyl‐5‐(methoxymethyl)‐1H‐benzo[d]imidazol‐2‐yl)pyridine was added as a chain extender. The resulting polyurethanes were then metallated using stoichiometric amounts of Zn(II) metal salts with different counterions. The resulting metallopolymers have substantially improved Young's moduli, increased failure stress, and improved thermomechanical behavior. The materials were microphase‐separated into anisotropic hard domains within a PTMO matrix. Simultaneous small‐angle X‐ray scattering and tensile testing revealed the minority hard segment domains remain relatively intact during elongation, likely due to the strength of the metal–ligand complex. © 2019 Wiley Periodicals, Inc. J. Polym. Sci., Part B: Polym. Phys. 2019 , 57, 1744–1757
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