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At least 1,711 records · Page 95

Simple Statistical Models for Predicting Overpressure Due to CO2 and Low-Salinity Waste-Fluid Injection into Deep Saline Formations

Deep saline aquifers have been used for waste-fluid disposal for decades and are the proposed targets for large-scale CO2 storage to mitigate CO2 concentration in the atmosphere. Due to relatively limited experience with CO2 injection in deep saline formations and given that the injection targets for CO2 sometimes are the same as waste-fluid disposal formations, it could be beneficial to model and compare both practices and learn from the waste-fluid disposal industry. In this paper, we model CO2 injection in the Patterson Field, which has been proposed as a site for storage of 50 Mt of industrial CO2 over 25 years. We propose general models that quickly screen the reservoir properties and calculate pressure changes near and far from the injection wellbore, accounting for variable reservoir properties. The reservoir properties we investigated were rock compressibility, injection rate, vertical-to-horizontal permeability ratio, average reservoir permeability and porosity, reservoir temperature and pressure, and the injectant total dissolved solids (TDS) in cases of waste-fluid injection. We used experimental design to select and perform simulation runs, performed a sensitivity analysis to identify the important variables on pressure build-up, and then fit a regression model to the simulation runs to obtain simple proxy models for changes in average reservoir pressure and bottomhole pressure. The CO2 injection created more pressure compared to saline waste-fluids, when similar mass was injected. However, we found a more significant pressure buildup at the caprock-reservoir interface and lower pressure buildup at the bottom of the reservoir when injecting CO2 compared with waste-fluid injection.

Ansari, Esmail↗

Simulated directional radiances of vegetation from satellite platforms

A computer modeling and simulation investigated the effects of off-nadir viewing, canopy geometry and density, solar zenith angle, and atmospheric conditions on the radiance of several vegetated targets. Effects on the normalized difference (ND) index were also investigated, and two wavelengths of 0.68 and 0.80 micron were simulated at nine sensor zenith angles, five sensor azimuths, and nine solar zenith angles. Seven canopies of low, medium, and high densities were observed, and bidirectional reflectance functions of other canopies were discussed. A modified Turner's (1974) atmospheric radiative transfer model was used for 2300 simulation runs. Off-nadir viewing effects were more pronounced in the red than the infrared, and the variability was found to be a function of canopy geometry. The ND index eliminated much of the variability seen in the individual bands, while the overall variability decreased with increasing biomass, and increased with increasing solar zenith angles.

Kirchner, J. A.↗

ALMA Spectral Imaging of Titan Contemporaneous with Cassini's Grand Finale

The Cassini mission performed 127 targeted ybys of Titan during its 13 yr mission to Saturn, culminating in the Grand Finale between 2017 April and September. Here we demonstrate the use of the Atacama Large Millimeter/ submillimeter Array (ALMA) to continue Cassini's legacy for chemical and climatological studies of Titan's atmosphere. Whole-hemisphere, interferometric spectral maps of HCN, HNC, HC3N, CH3CN, C2H3CN, C2H5CN,and C3H8 were obtained using ALMA in 2017 May at moderate (0 2, or 1300 km) spatial resolution, revealing the effects of seasonally variable chemistry and dynamics on the distribution of each species. The ALMA submillimeter observations of HCN and HC3N are consistent with Cassini infrared data on these species, obtained in the same month. Chemical/dynamical lifetimes of a few years are inferred for C2H3CN and C2H5CN, in reasonably close agreement with the latest chemical models incorporating the sticking of C2H5CN to stratospheric aerosol particles. ALMA radial limb ux proles provide column density information as a function of altitude, revealing maximum abundances in the thermosphere (above 600 km) for HCN, HNC, HC3N, and C2H5CN. This constitutes the rst detailed measurement of the spatial distribution of HNC, which is found to be conned predominantly to altitudes above 730 ± 60 km. The HNC emission map shows an east-west hemisphericasymmetry of 13% ± 3%. These results are consistent with very rapid production (and loss) of HNC in Titan's uppermost atmosphere, making this molecule an effective probe of short-timescale (diurnal) ionospheric processes.

Cordiner, M. A.↗

Diagnostic assessment of reservoir response to fracturing: a case study from Hydraulic Fracturing Test Site (HFTS) in Midland Basin

Abstract This paper outlines a data collection and diagnostics case study involving multiple horizontal shale wells. We look at well production profiles using rate transient analysis, differences in near wellbore complexity, geologic variations within the area of interest, as well as compositional differences in the rocks based on cores obtained from within the stimulated reservoir. The Hydraulic Fracturing Test Site is a multi-well experiment involving stimulation of unconventional shale wells in the southeastern Midland portion of the Permian Basin. The targeted formations include both the upper as well as the middle Wolfcamp formations, also referred alternatively as Wolfcamp A and Wolfcamp B. Data integration and analysis shared in this paper help us understand the various geologic controls impacting well productivity, particularly the wide variance observed between the Wolfcamp A and Wolfcamp B formations. Rate transient analysis indicates similar system permeabilities for stimulated wells. However, we observe higher effective fracture half-lengths for upper Wolfcamp wells. Using observations from 3D seismic interpretations (such as pad scale faults) as well as petrophysical and image log data, we highlight the substantial differences in stimulation as we move along the well laterals from the heel toward the toe sections. These differences are further reconciled with observations from zones with high data density at the core locations through stimulated rock, as well as independent data such as microseismic emissions. At the test site, Wolfcamp A was found to be relatively quartz rich with significant heterogeneity whereas Wolfcamp B is richer in clay and organic content. This impacts the geomechanical characteristics of the rock mass with much higher natural fracture density in the shallower interval. Thus, the fracture growth is more uniform in the deeper interval and more heterogeneous with branching likely in upper interval. Increased complexity also leads to consistently better productivity from the wells in the shallower interval as demonstrated from RTA results. This case study is unique because it provides valuable insights from actual sampling of the stimulated zones in hydraulically fractured wells and helps understand impact of various factors that contribute toward variability in well production. The findings from this study provides insights into need for optimization of completion designs in the various Wolfcamp landing zones, such as optimization of cluster or fracture spacing in various Wolfcamp intervals. In addition, it provides a useful template for data collection and research direction in future field test sites of similar nature in unconventional reservoirs.

Energy & Fuels↗

Proton radiography measurements and models of ejecta structure in shocked Sn

We present the experimental validation of ejecta source, mass and velocity models using proton radiography. Ejecta mass and velocity measurements were performed under 7 atm of He gas on Sn targets with 4 concentric sinusoidal features with radial wavelength of λ=2 mm and amplitude η 0 = 0.159 mm. 42 images at 275 and 400 ns intervals were obtained between 0 and 14 µs from the time of shock breakout. Volume density profiles for the spikes were determined through Abel inversion and spike, bubble and surface velocities were determined using proton radiography and also verified through Photon Doppler Velocimetry (PDV). Ejecta sheets evolve to a self-similar density distribution that depends on a scaling variable z/η s t where η˙s is the spike tip velocity, z is the distance from the free surface and t is the time after shock breakout. Both the density profiles and the time dependence of the mass per unit area in the evolving spikes are in good agreement with a Richtmyer-Meshkov instability based model for ejecta production and evolution.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Immunogenicity and structures of a rationally designed prefusion MERS-CoV spike antigen

Middle East respiratory syndrome coronavirus (MERS-CoV) is a lineage C betacoronavirus that since its emergence in 2012 has caused outbreaks in human populations with case-fatality rates of ~36%. As in other coronaviruses, the spike (S) glycoprotein of MERS-CoV mediates receptor recognition and membrane fusion and is the primary target of the humoral immune response during infection. Here we use structure-based design to develop a generalizable strategy for retaining coronavirus S proteins in the antigenically optimal prefusion conformation and demonstrate that our engineered immunogen is able to elicit high neutralizing antibody titers against MERS-CoV. We also determined high-resolution structures of the trimeric MERS-CoV S ectodomain in complex with G4, a stem-directed neutralizing antibody. The structures reveal that G4 recognizes a glycosylated loop that is variable among coronaviruses and they define four conformational states of the trimer wherein each receptor-binding domain is either tightly packed at the membrane-distal apex or rotated into a receptor-accessible conformation. As a result, our studies suggest a potential mechanism for fusion initiation through sequential receptor-binding events and provide a foundation for the structure-based design of coronavirus vaccines.

59 BASIC BIOLOGICAL SCIENCES↗

Mechanism of B-box 2 domain-mediated higher-order assembly of the retroviral restriction factor TRIM5α

Restriction factors and pattern recognition receptors are important components of intrinsic cellular defenses against viral infection. Mammalian TRIM5α proteins are restriction factors and receptors that target the capsid cores of retroviruses and activate ubiquitin-dependent antiviral responses upon capsid recognition. Here, we report crystallographic and functional studies of the TRIM5α B-box 2 domain, which mediates higher-order assembly of TRIM5 proteins. The B-box can form both dimers and trimers, and the trimers can link multiple TRIM5α proteins into a hexagonal net that matches the lattice arrangement of capsid subunits and enables avid capsid binding. Two modes of conformational flexibility allow TRIM5α to accommodate the variable curvature of retroviral capsids. B-box mediated interactions also modulate TRIM5α’s E3 ubiquitin ligase activity, by stereochemically restricting how the N-terminal RING domain can dimerize. Overall, these studies define important molecular details of cellular recognition of retroviruses, and how recognition links to downstream processes to disable the virus.

59 BASIC BIOLOGICAL SCIENCES↗

Multifunction Imaging and Spectroscopic Instrument

A proposed optoelectronic instrument would perform several different spectroscopic and imaging functions that, heretofore, have been performed by separate instruments. The functions would be reflectance, fluorescence, and Raman spectroscopies; variable-color confocal imaging at two different resolutions; and wide-field color imaging. The instrument was conceived for use in examination of minerals on remote planets. It could also be used on Earth to characterize material specimens. The conceptual design of the instrument emphasizes compactness and economy, to be achieved largely through sharing of components among subsystems that perform different imaging and spectrometric functions. The input optics for the various functions would be mounted in a single optical head. With the exception of a targeting lens, the input optics would all be aimed at the same spot on a specimen, thereby both (1) eliminating the need to reposition the specimen to perform different imaging and/or spectroscopic observations and (2) ensuring that data from such observations can be correlated with respect to known positions on the specimen. The figure schematically depicts the principal components and subsystems of the instrument. The targeting lens would collect light into a multimode optical fiber, which would guide the light through a fiber-selection switch to a reflection/ fluorescence spectrometer. The switch would have four positions, enabling selection of spectrometer input from the targeting lens, from either of one or two multimode optical fibers coming from a reflectance/fluorescence- microspectrometer optical head, or from a dark calibration position (no fiber). The switch would be the only moving part within the instrument.

Mouroulis, Pantazis↗

CFD Modeling of Bi-Directional PMD inside Cryogenic Propellant Tanks Onboard Parabolic Flights

Future cryogenic propulsion systems will require efficient methods with which to transfer cryogenic propellants from a depot storage tank to a customer receiver tank to minimize cost and maximize reusability. The Reduced Gravity Cryogenic Transfer project is currently developing advanced cryogenic fluid management technology and developing and validating new numerical models for three phases of transfer: line chilldown, tank chilldown, and tank fill. Additionally, multiple liquid nitrogen (LN 2 ) parabolic flight transfer rigs are being designed by universities and NASA to investigate the gravitational sensitivities that exist in these three technologies. In order to maximize the collection of low-g data during flights, it is required to extract as much (LN 2 as possible from the supply tank, despite variable gravity levels. The purpose of this paper is to present computational fluid dynamics (CFD) volume of fluid simulations of (LN 2 behavior in the supply tank onboard parabolic flights to validate the optimal design of a bi-directional propellant management device (PMD) using the commercial software FLOW-3D. A parametric study is conducted on the effects of gravity level, fill level, pore size, open area, thickness, and type of baffle on PMD performance. Based on results, the PMD as designed exceeds the targeted expulsion efficiency.

Jason Hartwig↗

Efficient Aho-Corasick String Matching on Emerging Multicore Architectures

String matching algorithms are critical to several scientific fields. Beside text processing and databases, emerging applications such as DNA protein sequence analysis, data mining, information security software, antivirus, ma- chine learning, all exploit string matching algorithms [3]. All these applica- tions usually process large quantity of textual data, require high performance and/or predictable execution times. Among all the string matching algorithms, one of the most studied, especially for text processing and security applica- tions, is the Aho-Corasick algorithm. 1 2 Book title goes here Aho-Corasick is an exact, multi-pattern string matching algorithm which performs the search in a time linearly proportional to the length of the input text independently from pattern set size. However, depending on the imple- mentation, when the number of patterns increase, the memory occupation may raise drastically. In turn, this can lead to significant variability in the performance, due to the memory access times and the caching effects. This is a significant concern for many mission critical applications and modern high performance architectures. For example, security applications such as Network Intrusion Detection Systems (NIDS), must be able to scan network traffic against very large dictionaries in real time. Modern Ethernet links reach up to 10 Gbps, and malicious threats are already well over 1 million, and expo- nentially growing [28]. When performing the search, a NIDS should not slow down the network, or let network packets pass unchecked. Nevertheless, on the current state-of-the-art cache based processors, there may be a large per- formance variability when dealing with big dictionaries and inputs that have different frequencies of matching patterns. In particular, when few patterns are matched and they are all in the cache, the procedure is fast. Instead, when they are not in the cache, often because many patterns are matched and the caches are continuously thrashed, they should be retrieved from the system memory and the procedure is slowed down by the increased latency. Efficient implementations of string matching algorithms have been the fo- cus of several works, targeting Field Programmable Gate Arrays [4, 25, 15, 5], highly multi-threaded solutions like the Cray XMT [34], multicore proces- sors [19] or heterogeneous processors like the Cell Broadband Engine [35, 22]. Recently, several researchers have also started to investigate the use Graphic Processing Units (GPUs) for string matching algorithms in security applica- tions [20, 10, 32, 33]. Most of these approaches mainly focus on reaching high peak performance, or try to optimize the memory occupation, rather than looking at performance stability. However, hardware solutions supports only small dictionary sizes due to lack of memory and are difficult to customize, while platforms such as the Cell/B.E. are very complex to program.

Tumeo, Antonino↗

The minor pilin PilV provides a conserved adhesion site throughout the antigenically variable meningococcal type IV pilus

Type IV pili (T4P) are among the most widespread adhesive factors in prokaryotes. In pathogenic Neisseria, the major pilin, which provides the structural framework for the filamentous T4P, undergoes antigenic variation allowing the bacteria to evade the humoral immune response without impacting host-cell adhesion. Here, we show that a minor pilin, PilV, is distributed throughout the pilus and contributes to Neisseria meningitidis adhesion and that antibodies to PilV block meningococcal adhesion in vivo. Our results provide a mechanism whereby N. meningitidis varies its immunodominant major pilin to escape antibody recognition while maintaining conserved sites throughout the pilus for host receptor binding. They further suggest a strategy to prevent or block deadly N. meningitidis infections by targeting this minor pilin.

59 BASIC BIOLOGICAL SCIENCES↗

Disparities in the air quality monitoring stations and PM₂.₅ in Chicago’s air quality landscape

Fine particulate matter (PM₂.₅) poses significant public and environmental health risks in urban areas. Chicago’s dense industry and traffic create variable air quality, yet monitoring is unevenly distributed, resulting in undersampling of air quality data in some city areas. This study applied a hybrid approach using GIS-based kernel density mapping, interpolation modeling (IDW, Spline, Kriging) of USEPA monitoring data, multi-scale temporal trend analyses (hourly to annual), and ESDA. Accordingly, the density surface showed that monitors are concentrated in the affluent north, northwest, and southwest sides of Chicago (up to ~ 0.07 stations per sq mile), while the south and southeast regions, with predominantly minority communities, have virtually no coverage. Overall, citywide coverage is minimal (~ 4–5 monitors total; ~0.02 per sq mile; ≈1 per 600,000 residents). Temporal analyses showed that the city’s mean annual PM₂.₅ (~ 10.8 µg/m³) exceeds USEPA/WHO standards (9 µg/m³), with summer means (~ 17.1 µg/m³) significantly higher than other seasons. Diurnally, a clear pattern was observed, with PM₂.₅ concentrations peaking overnight (00:00–03:00) and during the morning rush hours, and dipping during midday to late afternoon. Spatial distribution of PM₂.₅ identified hotspots near O’Hare Airport, the downtown Loop area, and south-side neighborhoods, contrasting with lower concentrations on the north side, revealing Chicago’s socioeconomic divides and resulting environmental inequities. The findings underscore the need for expanded monitoring and targeted interventions in under-monitored, high-pollution communities to advance equitable community health.

54 ENVIRONMENTAL SCIENCES↗

Structure of adeno-associated virus-2 in complex with neutralizing monoclonal antibody A20

The use of adeno-associated virus (AAV) as a gene therapy vector is limited by the host neutralizing immune response. The cryo-electron microscopy (EM) structure at 8.5 A resolution is determined for a complex of AAV-2 with the Fab' fragment of monoclonal antibody (MAb) A20, the most extensively characterized AAV MAb. The binding footprint is determined through fitting the cryo-EM reconstruction with a homology model following sequencing of the variable domain, and provides a structural basis for integrating diverse prior epitope mappings. The footprint extends from the previously implicated plateau to the side of the spike, and into the conserved canyon, covering a larger area than anticipated. Comparison with structures of binding and non-binding serotypes indicates that recognition depends on a combination of subtle serotype-specific features. Separation of the neutralizing epitope from the heparan sulfate cell attachment site encourages attempts to develop immune-resistant vectors that can still bind to target cells.

60 APPLIED LIFE SCIENCES↗

YOUNG STELLAR OBJECTS IN LYNDS 1641: DISKS, ACCRETION, AND STAR FORMATION HISTORY

We investigate the young stellar objects (YSOs) in the Lynds 1641 (L1641) cloud using multi-wavelength data including Spitzer, WISE, the Two Micron All Sky Survey, and XMM covering {approx}1390 YSOs across a range of evolutionary stages. In addition, we targeted a sub-sample of YSOs for optical spectroscopy with the MMT/Hectospec and the MMT/Hectochelle. We use these data, along with archival photometric data, to derive spectral types, extinction values, masses, ages, and accretion rates. We obtain a disk fraction of {approx}50% in L1641. The disk frequency is almost constant as a function of stellar mass with a slight peak at log (M{sub *}/M{sub Sun }) Almost-Equal-To -0.25. The analysis of multi-epoch spectroscopic data indicates that the accretion variability of YSOs cannot explain the two orders of magnitude of scatter for YSOs with similar masses. Forty-six new transition disk (TD) objects are confirmed in this work, and we find that the fraction of accreting TDs is lower than for optically thick disks (40%-45% versus 77%-79%, respectively). We confirm our previous result that the accreting TDs have a median accretion rate similar to normal optically thick disks. We confirm that two star formation modes (isolated versus clustered) exist in L1641. We find that the diskless YSOs are statistically older than the YSOs with optically thick disks and the TD objects have a median age that is intermediate between those of the other two populations. We tentatively study the star formation history in L1641 based on the age distribution and find that star formation started to be active 2-3 Myr ago.

79 ASTRONOMY AND ASTROPHYSICS↗

High-precision vapor pressure measurement apparatus with facile and inexpensive construction

This study describes an apparatus for high-precision variable temperature measurement of liquid vapor pressure. The apparatus can be used to measure the vapor pressure using only 0.5 ml of the liquid sample. To evaluate the accuracy of the device measurement, water and 2-propanol are utilized as standard liquids, and their vapor pressure is measured with a maximum uncertainty of ~1%. This apparatus can be replicated using inexpensive and commonly used laboratory fittings and fixtures, making it an indispensable tool for synthetic chemists and chemical engineers involved in the iterative synthesis of compounds, targeting different vapor–liquid equilibrium regimes.

Engineering↗

A conserved viral RNA fold enables nuclease resistance across kingdoms of life

Abstract Viral exoribonuclease-resistant RNA (xrRNA) structures block cellular nucleases to produce subgenomic viral RNAs during infection. High sequence variability among xrRNAs from distantly related viruses raises questions about the shared molecular features that enable these RNAs to withstand the strong unwinding forces of exoribonucleases. Here, we present the first structure of a plant-virus xrRNA in its active conformation and uncover universal principles of xrRNA folding. Comparison with the structure of a human-pathogenic flavivirus xrRNA reveals that both share a core structural motif—a protective ring encircling the RNA’s 5′ end—despite lacking sequence similarity. Disrupting this core motif through targeted mutagenesis eliminates exoribonuclease-resistance and attenuates viral infection. We identify hundreds of related structures across multiple virus families, supporting the conservation of this mechanism. Our study demonstrates how distantly related RNA viruses have converged on a common structural strategy to inhibit cellular nucleases, with a universal ring topology as the defining feature of viral xrRNAs.

Biochemistry & Molecular Biology↗

Fully differential single-photon double photoionization of atomic magnesium

The valence-shell double ionization of atomic magnesium is calculated using a grid-based representation of the 3s 2 electron configuration in the presence of a fully occupied frozen-core configuration of the remaining ten electrons. Atomic orbitals are constructed from an underlying finite-element discrete variable representation that facilitates accurate representation of the interaction between the inner-shell electrons with those entering the continuum. Length and velocity gauge results are compared with recent theoretical calculations and experimental measurements for the total double-, single-, and triple-differential cross sections, particularly at the photon energy of 55.49 eV for the last one. Comparison between the similar processes of double ionization of the ns 2 atoms helium, beryllium, and magnesium further illuminates the role of valence-shell electron correlation in atomic targets with heliumlike electronic configurations and symmetry.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Design, testing and emplacement of sand-bentonite for the construction of a gas-permeable seal test (gast)

The main aim of a gas-permeable seal is to increase the gas transport capacity of the backfilled underground structures without compromising the radionuclide retention capacity of the engineered barrier system or the host rock. Such a seal, proposed by NAGRA as part of the 'Engineered Gas Transport System' in a L/ILW repository, considers specially designed backfill and sealing materials such as sand/bentonite (S/B) mixtures with a bentonite content of 20- 30%. NAGRA's RD and D plan foresees demonstrating the construction and performance of repository seals and improving the understanding and the database for reliably predicting water and gas transport through these systems. The fluid flow and gas transport properties of these backfills have been determined at the laboratory scale and through modelling the maximum gas pressures in the near field of a repository system and the gas flow rates have been evaluated. Within this context, the Gas-permeable Seal Test (GAST) was constructed at Grimsel Test Site (GTS) to validate the effective functioning of gas-permeable seals at realistic scale. The intrinsic permeability of such seals should be in the order of 10-18 m2. Because the construction of S/B seals is not common practice for construction companies, a stepwise approach was followed to evaluate different construction and quality assurance methods. As a first step, an investigation campaign with simple tests in the laboratory and in the field followed by 1:1 scale pre-tests at GTS was performed. Through this gradual increase of the degree of complexity, practical experience was gained and confidence in the methods and procedures to be used was built, which allowed reliably producing and working with S/B mixtures at a realistic scale. During the whole pre-testing phase, a quality assurance (QA) programme for S/B mixtures was developed and different methods were assessed. They helped to evaluate and choose appropriate emplacement techniques and methodologies to achieve the target S/B dry density of 1.70 g/cm{sup 3}, which results in the desired intrinsic permeability throughout the experiment. The final QA methodology was targeted at engineering measures to decide if the work can proceed, and at producing high resolution material properties database for future water and gas transport modelling activities. The different applied QA techniques included standard core cutter tests, the application of neutron-gamma (Troxler) probes and two mass balance methods (2D and 3D). The methods, looking at different representative scales, have provided only slightly different results and showed that the average density of the emplaced S/B plug was between 1.65 and 1.73 g/cm{sup 3}. Spatial variability of dry densities was observed at decimeter scale. Overall, the pre-testing and QA programme performed for the GAST project demonstrated how the given design criteria and requirements can be met by appropriately planning and designing the material emplacement. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗