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At least 1,711 records · Page 95

Ray-tracing image simulations of transparent objects with complex shape and inhomogeneous refractive index

Optical images of transparent three-dimensional objects can be different from a replica of the object’s cross section in the image plane, due to refraction at the surface or in the body of the object. Simulations of the object’s image are thus needed for the visualization and validation of physical models. We report ray tracing image simulations that achieved high physical fidelity, reproducing optical behaviors and image features not rendered in previous studies. We replicated brightfield microscopy images of drops with complex shapes, and images of pressure and shock waves traveling inside them. For high physical fidelity, the simulations must replicate the spatial and angular distribution of illumination rays, and both the experiment and the simulation must be designed for accurate optical modeling. The simulations are highly sensitive to the properties of the drops and can be used to diagnose and refine fluid dynamics models. The simulated images can also be optimized to extract multiple 3D properties from experimental images. Compared to specialized single-shot 3D imaging methods, this approach has the advantage that it preserves the experimental simplicity, the high resolution, and the visual interpretability characteristic to basic optical imaging. The techniques introduced here are directly applicable to optical microscopy, so they can be used in other fields, such as microfluidics and biology, to expand the type and the accuracy of three-dimensional information that can be extracted from basic optical images.

Cavitation↗

DeepGRN: prediction of transcription factor binding site across cell-types using attention-based deep neural networks

Abstract Background Due to the complexity of the biological systems, the prediction of the potential DNA binding sites for transcription factors remains a difficult problem in computational biology. Genomic DNA sequences and experimental results from parallel sequencing provide available information about the affinity and accessibility of genome and are commonly used features in binding sites prediction. The attention mechanism in deep learning has shown its capability to learn long-range dependencies from sequential data, such as sentences and voices. Until now, no study has applied this approach in binding site inference from massively parallel sequencing data. The successful applications of attention mechanism in similar input contexts motivate us to build and test new methods that can accurately determine the binding sites of transcription factors. Results In this study, we propose a novel tool (named DeepGRN) for transcription factors binding site prediction based on the combination of two components: single attention module and pairwise attention module. The performance of our methods is evaluated on the ENCODE-DREAM in vivo Transcription Factor Binding Site Prediction Challenge datasets. The results show that DeepGRN achieves higher unified scores in 6 of 13 targets than any of the top four methods in the DREAM challenge. We also demonstrate that the attention weights learned by the model are correlated with potential informative inputs, such as DNase-Seq coverage and motifs, which provide possible explanations for the predictive improvements in DeepGRN. Conclusions DeepGRN can automatically and effectively predict transcription factor binding sites from DNA sequences and DNase-Seq coverage. Furthermore, the visualization techniques we developed for the attention modules help to interpret how critical patterns from different types of input features are recognized by our model.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Augmented Monitoring and Condition Assessment Program (AMCAP) Material Test Reactor (MTR) (Fuel Inspection Program Report)

The AMCAP MTR Fuel Inspection Program, a special inspection program comprised of four inspection campaigns, examined a total of ten (10) pre-selected aluminum-clad, aluminum-based fuel core spent nuclear fuel assemblies (ASNF) stored in the L Area Disassembly Basin (L Basin) at the Savannah River Site. A full description of the inspections and the results are reported. The fuel had been stored in bundled-tube storage (Vertical Tube Storage) for periods of 18 to 21 years. The prior service experience of the individual 10 assemblies varies, but all included irradiation followed by wet storage at international research reactor sites prior to shipment to the US and storage in L Basin. The 10 assemblies were expected to be among the “worst"’ in terms of prior corrosion damage of the entire inventory of the direct-bundle-stored ASNF in L Basin. The inventory of MTR ASNF in L Basin will continue to be stored in the bundled-tube configuration or in slug-storage buckets with inserts pending retrieval for ultimate disposition. The MTR fuel inspections focused on collecting information for characterization of the material condition of the ASNF considering various types of aluminum fuel corrosion degradation of its assembled materials in water storage. A custom-designed Fuel Inspection Table was used to stage the fuel for remote, enhanced visual examination (close-up video imaging & recording) with controlled lighting and positioning that enables reproducibility of imaging conditions. The inspections were conducted by fuel subject matter expert staff from Spent Fuel Project Engineering (SFPE) and the Savannah River National Laboratory (SRNL). Stills captured from the video records were used to compare the corrosion evolution from previous records, as available. This evaluation of the inspection results including the comparison to the previous inspection results demonstrate that the water quality and the storage configuration of ASNF in L Basin do not cause aggressive corrosion degradation of the fuel; mitigation of the prior corrosion degradation of the fuel also appears to have been achieved with the good water quality conditions of L Basin. Recommendations are made for future inspection of the fuel to trend corrosion degradation and demonstrate continued safe wet storage of the ASNF in L Basin. The next fuel examination is recommended to be performed in 5 years.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

A study of a space-station-associated multiple spacecraft Michelson spatial interferometer

One approach to Michelson spatial interferometry at optical wavelengths involves use of an array of spacecraft in which two widely-separated telescopes collect light from a star and direct it to a third, centrally-located, device which combines the beams in order to detect and measure interference fringes. The original version of a spacecraft array for Michelson spatial interferometry (SAMSI) was modified so that the system uses the fuel resupply capability of a space station. The combination of this fuel resupply capability with a method of obtaining image Fourier transform phase information, necessary for full image reconstruction, permits SAMSI to be used to synthesize images equivalent to those produced by huge apertures in space. Synthesis of apertures in the 100 to 500 meter range is discussed. Reconstruction can be performed to a visual magnitude of at least 8 for a 100 A passband in 9 hours. Data are simultaneously collected for image generation from 0.1 micron to 18 microns. In the one-dimensional mode, measurements can be made every 90 minutes (including acquisition and repointing time) for objects as faint as 19th magnitude in the visible.

Stachnik, R. V.↗

Water tunnel flow visualization using a laser

Laser systems for flow visualization in water tunnels (similar to the vapor screen technique used in wind tunnels) can provide two-dimensional cross-sectional views of complex flow fields. This parametric study documents the practical application of the laser-enhanced visualization (LEV) technique to water tunnel testing. Aspects of the study include laser power levels, flow seeding (using flourescent dyes and embedded particulates), model preparation, and photographic techniques. The results of this study are discussed to provide potential users with basic information to aid in the design and setup of an LEV system.

Beckner, C.↗

Water tunnel flow visualization using a laser

Laser systems for flow visualization in water tunnels (similar to the vapor screen technique used in wind tunnels) can provide two-dimensional cross-sectional views of complex flow fields. This parametric study documents the practical application of the laser-enhanced visualization (LEV) technique to water tunnel testing. Aspects of the study include laser power levels, flow seeding (using fluorescent dyes and embedded particulates), model preparation, and photographic techniques. The results of this study are discussed to provide potential users with basic information to aid in the design and setup of an LEV system.

Curry, R. E.↗

The Topology of Symmetric Tensor Fields

Combinatorial topology, also known as "rubber sheet geometry", has extensive applications in geometry and analysis, many of which result from connections with the theory of differential equations. A link between topology and differential equations is vector fields. Recent developments in scientific visualization have shown that vector fields also play an important role in the analysis of second-order tensor fields. A second-order tensor field can be transformed into its eigensystem, namely, eigenvalues and their associated eigenvectors without loss of information content. Eigenvectors behave in a similar fashion to ordinary vectors with even simpler topological structures due to their sign indeterminacy. Incorporating information about eigenvectors and eigenvalues in a display technique known as hyperstreamlines reveals the structure of a tensor field. The simplify and often complex tensor field and to capture its important features, the tensor is decomposed into an isotopic tensor and a deviator. A tensor field and its deviator share the same set of eigenvectors, and therefore they have a similar topological structure. A a deviator determines the properties of a tensor field, while the isotopic part provides a uniform bias. Degenerate points are basic constituents of tensor fields. In 2-D tensor fields, there are only two types of degenerate points; while in 3-D, the degenerate points can be characterized in a Q'-R' plane. Compressible and incompressible flows share similar topological feature due to the similarity of their deviators. In the case of the deformation tensor, the singularities of its deviator represent the area of vortex core in the field. In turbulent flows, the similarities and differences of the topology of the deformation and the Reynolds stress tensors reveal that the basic addie-viscosity assuptions have their validity in turbulence modeling under certain conditions.

Levin, Yingmei↗

Nondestructive Analysis of Apollo Samples by Micro-CT and Micro-XRF Analysis: A PET Style Examination

An integral part of any sample return mission is the initial description and classification of returned samples by the preliminary examination team (PET). The goal of a PET is to characterize and classify the returned samples, making this information available to the general research community who can then conduct more in-depth studies on the samples. A PET strives to minimize the impact their work has on the sample suite, which often limits the PET work to largely visual measurements and observations like optical microscopy. More modern techniques can also be utilized by future PET to nondestructively characterize astromaterials in a more rigorous way. Here we present our recent analyses of Apollo samples 14321 and 14305 by micro-CT and micro-XRF (respectively), assess the potential for discovery of "new" Apollo samples for scientific study, and evaluate the usefulness of these techniques in future PET efforts.

Zeigler, Ryan A.↗

National Climate Assessment - Land Data Assimilation System (NCA-LDAS) Data and Services at NASA GES DISC

The National Climate Assessment-Land Data Assimilation System (NCA-LDAS) is an Integrated Terrestrial Water Analysis, and is one of NASAs contributions to the NCA of the United States. The NCA-LDAS has undergone extensive development, including multi-variate assimilation of remotely-sensed water states and anomalies as well as evaluation and verification studies, led by the Goddard Space Flight Centers Hydrological Sciences Laboratory (HSL). The resulting NCA-LDAS data have recently been released to the general public and include those from the Noah land-surface model (LSM) version 3.3 (Noah-3.3) and the Catchment LSM version Fortuna-2.5 (CLSM-F2.5). Standard LSM output variables including soil moistures temperatures, surface fluxes, snow cover depth, groundwater, and runoff are provided, as well as streamflow using a river routing system. The NCA-LDAS data are archived at and distributed by the NASA Goddard Earth Sciences Data and Information Services Center (GES DISC). The data can be accessed via HTTP, OPeNDAP, Mirador search and download, and NASA Earth data Search. To further facilitate access and use, the NCA-LDAS data are integrated into the NASA Giovanni, for quick visualization and analysis, and into the Data Rods system, for retrieval of time series of long time periods. The temporal and spatial resolutions of the NCA-LDAS data are, respectively, daily-averages and 0.125x0.125 degree, covering North America (25N 53N; 125W 67W) and the period January 1979 to December 2015. The data files are in self-describing, machine-independent, CF-compliant netCDF-4 format.

data assimiliation↗

System and Method for Providing Visualization Aids for Effective Interval Management Procedure Execution

Methods and apparatus are provided for simulating an interval management (IM) procedure for an ownship aircraft and a target aircraft before the start of the performance of the IM procedure. The method comprises receiving an IM clearance message from air traffic control (ATC), parsing the received IM clearance message into parsed information components identifying the complexity of the IM clearance message based on the number of elements in the information components, generating a flight chart depicting the area over which the proposed IM procedure is to traverse using the mapping information wherein the flight chart includes a vertical view and a plan view, and simulating the IM procedure on the generated flight chart before any steps of the IM procedure are performed.

Kashi, Rajanikanth Nagaraj↗

Advanced Information Systems Technology (AIST) Overview & Current and Recent Projects

"NASA's Advanced Information Systems Technology (AIST) Program identifies, develops, and supports adoption of software and information systems, as well as novel computer science technologies expected to be needed by the Earth Science Division in the 5-10-year timeframe. Overall, the AIST Program is focusing on advanced technologies and innovative concepts with three main objectives: O1. Enable new observation measurements and new observing systems design and operations through intelligent, timely, dynamic, and coordinated distributed sensing; O2. Enable agile science analyses that fully utilize the large amount of diverse observations using advanced analytic tools, visualizations, and computing environments, and that interact seamlessly with relevant observing systems; O3. Enable the development of integrated Earth Science frameworks that mirror the Earth with state-of-the-art models (Earth system models and others), timely and relevant observations, and analytic tools. This thrust will provide technology for enabling near- and long-term science and policy decisions (""""science decisions"""" including planning for the acquisition of new measurements; the development of new models or science analysis; the integration of Earth observations in novel ways; applications to inform choices, support decisions, and guide actions for societal benefit; etc.). AIST objectives aim at optimizing Earth Science mission return – NOS from an observation point of view and ACF/ESDT from an information analysis and utilization point of view. The assets and data accessed and utilized in these systems may come from NASA and non-NASA sources. "

Earth Science Remote Sensing; Information Systems↗

Flexible visualization of a 3rd party Intrusion Prevention (Security) tool: A use case with the ELK stack

A difficult aspect of cyber security is the ability to achieve automated real time intrusion prevention across various sets of systems. To this extent, several companies are offering comprehensive solutions that leverage an "accuracy of scale" and moving much of the intelligence and detection on the Cloud, relying on an ever-growing set of data and analytics to increase decision accuracy. Often, they provide tools to visualize the decision workflows in attack prevention (as well as tune the algorithm) but those solutions are not always practical as companies see the problem as "global" that is, from a unified Cyber-security standpoint. However, a key to a successful Cyber-security program is transparency and trust: from an experimental team viewpoint, this specifically means having the ability to immediately see what and from where, who has been blocked and being able to inform the community in case of a revoked access without the need for filing a "ticket" (that may eventually be answered) – in other words, rapid response to their user-base is essential but solutions targeting "sub-groups" in an organization are not often available. We have come up with a versatile solution leveraging the ELK stack (Elasticsearch, Logstash, & Kibana) and an IPS (Intrusion Prevention System) based WAF (Web Application Firewall) from Signal Sciences. Signal Science allows the streaming of detailed logs in a Logstash format suitable for custom solutions for visualization. By combining these two tools, we have strengthened our security posture and enabled individual experiments to monitor their own traffic. Specifically, the IPS WAF provides unique data such as country of origin, protocol, response code, source IP, and paths accessed. In this contribution, we will show how we engineered a visualization solution so experiment groups could access a dashboard with predefined graphs but also, where they can create individual customizable dashboards used to display blocked traffic and troubleshoot latency issues. We will discuss the details and procedures for developing and configuring these tools and how it benefits cyber security postures across our scientific based environment.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

The XtalOpt Evolutionary Algorithm for Crystal Structure Prediction

Significant progress has been made in the field of a priori crystal structure prediction, with a number of recent remarkable success stories. Herein, we briefly outline the methods that have been developed for finding the global minimum structure and interesting local minima without the need for experimental information. Focus is placed on describing the XTALOPT evolutionary algorithm (EA) developed in our group towards this end. XTALOPT is published under well-known open-source licenses, and the EA searches can be analyzed via the AVOGADRO chemical editor and visualizer. We describe new algorithmic developments that have made it possible to predict the structures of ever-more complex crystalline lattices. Benchmark tests, which clearly illustrate how the new developments improve the success rate and accelerate the discovery of the global minimum structure, are carried out. Lastly, we describe how XTALOPT has been employed to predict novel ternary hydrides that have the propensity for high-temperature superconductivity under pressure.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

RCSB Protein Data Bank (RCSB.org): delivery of experimentally-determined PDB structures alongside one million computed structure models of proteins from artificial intelligence/machine learning

Abstract The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB), founding member of the Worldwide Protein Data Bank (wwPDB), is the US data center for the open-access PDB archive. As wwPDB-designated Archive Keeper, RCSB PDB is also responsible for PDB data security. Annually, RCSB PDB serves >10 000 depositors of three-dimensional (3D) biostructures working on all permanently inhabited continents. RCSB PDB delivers data from its research-focused RCSB.org web portal to many millions of PDB data consumers based in virtually every United Nations-recognized country, territory, etc. This Database Issue contribution describes upgrades to the research-focused RCSB.org web portal that created a one-stop-shop for open access to ∼200 000 experimentally-determined PDB structures of biological macromolecules alongside >1 000 000 incorporated Computed Structure Models (CSMs) predicted using artificial intelligence/machine learning methods. RCSB.org is a ‘living data resource.’ Every PDB structure and CSM is integrated weekly with related functional annotations from external biodata resources, providing up-to-date information for the entire corpus of 3D biostructure data freely available from RCSB.org with no usage limitations. Within RCSB.org, PDB structures and the CSMs are clearly identified as to their provenance and reliability. Both are fully searchable, and can be analyzed and visualized using the full complement of RCSB.org web portal capabilities.

59 BASIC BIOLOGICAL SCIENCES↗

A Vision–based Robust $\mathcal{H}$ ∞ Gain Scheduling Longitudinal and Lateral Following Controller for Autonomous Vehicles on Urban Curved Roads

Implementing advanced driver assistance systems (ADAS) in congested and intricate urban traffic scenarios poses significant challenges. To address the frequent stop–and–go motions exhibited by autonomous vehicles (AVs) navigating urban roads with changes in curvature, we propose a vision–based robust $\mathcal{H}$ ∞ adaptive cruise control system (ACC) for longitudinal control, plus a lane keeping assist system (LKAS) for lateral control. For the vision-based ACC, a weighted probability objective function for the vehicle following behavior is formulated. We incorporate $\mathcal{H}$ ∞ performance and gain scheduling techniques to mitigate the impact of uncertainty in visual sensor measurements. Furthermore, the optimal time headway is scheduled based on the velocity to ensure traffic flow efficiency and safety during the vehicle following process. For the LKAS, we introduce a road curvature estimation method that integrates lane and vehicle dynamics information to obtain the lateral and heading offsets. Next, the design criterion of the observer–based robust gain scheduling lateral motion controller is established by linear matrix inequality (LMI). Here, a series of experiments conducted within a camera–in–loop platform validate the proposed method.

33 ADVANCED PROPULSION SYSTEMS↗

Data Visualization: Augmented Reality

In recent years, there has been an increasing interest in developing new technologies for automated characterization and visualization of condition monitoring data. Augmented Reality (AR) is a technology that is being developed to improve such data visualization. Augmented reality has been defined as a technology that merges virtual and physical components in real-time, and in three dimensions. Wearable, commercially-available AR devices allow onsite engineers and technicians to perform inspection tasks with significantly more available information such as comparisons of past and present sensor and imager data, onsite data analysis and result displays, and various forms of metadata including technical drawings, previous inspection reports and maintenance histories, operation manuals, codes and standards, and holograms representing data analysis results superimposed onto the in situ monitored system.

42 ENGINEERING↗

Overview of SMART Initiative

The objective of the SMART Initiative, i.e., Science-informed Machine Learning (ML) for Accelerating Real-Time Decisions in Subsurface Applications, is to show how the utilization of ML can significantly improve efficiency and effectiveness of field-scale commercial carbon storage operations in three main areas: real-time visualization, virtual learning, and real-time forecasting. This presentation reports the status of SMART initiative for demonstrating: (a) virtual learning during the pre-injection permitting phase, and (b) ML-assisted operational decision making and visualization.

Siriwardane, Hema↗

Leveraging AI and Spatial Data to Unlock Pipeline Integrity Insights: NETL’s Advanced Infrastructure Integrity Model (AIIM)

Maintaining the integrity of natural gas infrastructure plays a critical role in ensuring energy security. Robust, data-driven foundational AI models for pipeline integrity can help address risk management and mitigation issues. Trusted foundational models can help with industry adoption and accelerate innovation by enhancing integrity predictions, reduce costs, and informing infrastructure build-out. The AIIM dashboard was released in 2022 and utilizes multi-ML models for ensemble-type insights. It was expanded to include analytics on reported incidents. It was developed as an ESRI Dashboard to support data visualization & interrogation and contains pipeline data and model results.

Advanced Infrastructure Integrity Model (AIIM)↗