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At least 1,711 records · Page 95

Computational Framework for Machine-Learning-Enabled 13 C Fluxomics

13 C metabolic flux analysis (MFA) has emerged as a powerful tool for synthetic biology. This optimization-based approach suffers long computation time and unstable solutions depending on the initial guess. Here, we develop a machine-learning-based framework for 13 C fluxomics. Specifically, training and test data sets are generated by metabolic network decomposition and flux sampling, in which flux ratios at metabolic nodes and simulated labeling patterns of metabolites are used as training targets and features, respectively. To improve prediction accuracy and simplify the model, automated processes are developed for flux ratio selection based on solvability and feature screening based on importance. We found that predictive performance can be significantly improved using both amino acids and central carbon metabolites in comparison with amino acids alone. Together with measured external fluxes, the predicted flux ratios determine the mass balance system, yielding global flux distributions. This approach is validated by flux estimation using both simulated and experimental data in comparison with canonical 13 C MFA. The approach represents a reliable fluxomics method readily applicable to high-throughput metabolic phenotyping, which highlights the advances of intelligent learning algorithms in synthetic biology, specifically in the Test and Learn stage of the Design-Build-Test-Learn cycle.

13C metabolic flux analysis↗

Tropical Cyclone Super Resolution using conditional diffusion denoising probabilistic model from mesoscale simulation to LES

Accurate modeling of tropical cyclone wind fields is essential for the design, risk assessment, and operational planning of offshore energy infrastructure. While mesoscale simulations are widely used thanks to their computational efficiency, they lack the necessary resolution to capture key features such as wind shear and veer profiles as well as the distribution turbulent kinetic energy (TKE). High-fidelity large-eddy simulation (LES) models on the other hand, can resolve turbulent structures and provide a more accurate representation of the complex wind field, albeit at a higher computational cost. To address this modeling gap, we introduce a two-part generative framework to enhance the resolution and physics-capturing ability of mesoscale simulations. First, a reduced-order model based on Karhunen–Loève (KL) decomposition is used to extract dominant spatial modes from one-dimensional mean wind profiles. A multilayer perceptron (MLP) is trained to map mesoscale mode weights to their LES counterparts, enabling accurate reconstruction of vertical velocity profiles. Second, a conditional Diffusion Denoising Probabilistic Model (DDPM) is developed to super-resolve coarse and low-fidelity mesoscale velocity fields, recovering fine-scale turbulence structures and stress distributions. The framework is evaluated across different tropical cyclone intensity categories defined by the Saffir–Simpson scale and demonstrates strong performance in both interpolation and extrapolation tasks. The generated fields accurately reproduce spatial coherence, stress distributions, and spectral energy characteristics observed in LES data. By bridging the fidelity gap between mesoscale and LES outputs, this approach offers a scalable, data-driven solution for enhancing the representation of tropical cyclone wind fields, enabling more robust offshore energy infrastructure systems design in tropical-cyclone-prone areas.

17 WIND ENERGY↗

Application of new electro-optic technology to Space Station Freedom data management system

A low risk design methodology to permit the local bus structures to support increased data carrying capacities and to speed messages and data flow between nodes or stations on the Space Station Freedom Data Management System in anticipation of growing requirements was evaluated and recommended. The recommended design employs a collateral fiber optic technique that follows a NATO avionic standard that is developed, tested, and available. Application of this process will permit a potential 25 fold increase in data transfer performance on the local wire bus network with a fiber optic network, maintaining the functionality of the low-speed bus and supporting all of the redundant transmission and fault detection capabilities designed into the existing system. The application of wavelength division multiplexing (WDM) technology to both the local data bus and global data bus segments of the Data Management System to support anticipated additional highspeed data transmission requirements was also examined. Techniques were examined to provide a dual wavelength implementation of the fiber optic collateral networks. This dual wavelength implementation would permit each local bus to support two simultaneous high-speed transfers on the same fiber optic bus structure and operate within the limits of the existing protocol standard. A second WDM study examined the use of spectral sliced technology to provide a fourfold increase in the Fiber Distributed Data Interface (FDDI) global bus networks without requiring modifications to the existing installed cable plant. Computer simulations presented indicated that this data rate improvement can be achieved with commercially available optical components.

Husbands, C. R.↗

Opus: A Coordination Language for Multidisciplinary Applications

Data parallel languages, such as High Performance fortran, can be successfully applied to a wide range of numerical applications. However, many advanced scientific and engineering applications are multidisciplinary and heterogeneous in nature, and thus do not fit well into the data parallel paradigm. In this paper we present Opus, a language designed to fill this gap. The central concept of Opus is a mechanism called ShareD Abstractions (SDA). An SDA can be used as a computation server, i.e., a locus of computational activity, or as a data repository for sharing data between asynchronous tasks. SDAs can be internally data parallel, providing support for the integration of data and task parallelism as well as nested task parallelism. They can thus be used to express multidisciplinary applications in a natural and efficient way. In this paper we describe the features of the language through a series of examples and give an overview of the runtime support required to implement these concepts in parallel and distributed environments.

Chapman, Barbara↗

Polar Dunes Resolved by the Mars Orbiter Laser Altimeter Gridded Topography and Pulse Widths

The Mars Orbiter Laser Altimeter (MOLA) polar data have been refined to the extent that many features poorly imaged by Viking Orbiters are now resolved in densely gridded altimetry. Individual linear polar dunes with spacings of 0.5 km or more can be seen as well as sparsely distributed and partially mantled dunes. The refined altimetry will enable measurements of the extent and possibly volume of the north polar ergs. MOLA pulse widths have been recalibrated using inflight data, and a robust algorithm applied to solve for the surface optical impulse response. It shows the surface root-mean-square (RMS) roughness at the 75-m-diameter MOLA footprint scale, together with a geological map. While the roughness is of vital interest for landing site safety studies, a variety of geomorphological studies may also be performed. Pulse widths corrected for regional slope clearly delineate the extent of the polar dunes. The MOLA PEDR profile data have now been re-released in their entirety (Version L). The final Mission Experiment Gridded Data Records (MEGDR's) are now provided at up to 128 pixels per degree globally. Densities as high as 512 pixels per degree are available in a polar stereographic projection. A large computational effort has been expended in improving the accuracy of the MOLA altimetry themselves, both in improved orbital modeling and in after-the-fact adjustment of tracks to improve their registration at crossovers. The current release adopts the IAU2000 rotation model and cartographic frame recommended by the Mars Cartography Working Group. Adoption of the current standard will allow registration of images and profiles globally with an uncertainty of less than 100 m. The MOLA detector is still operational and is currently collecting radiometric data at 1064 nm. Seasonal images of the reflectivity of the polar caps can be generated with a resolution of about 300 m per pixel.

Gregory A Neumann↗

A Low-Enriched Uranium (LEU) option for the conversion of FRM II

The Forschungs-Neutronenquelle Heinz Maier-Leibnitz (FRM II) is Germany’s most powerful research reactor and uses Highly Enriched Uranium (HEU) fuel enriched at 93 %. The Technical University of Munich (TUM) operates the reactor and has been mandated to convert the FRM II to a lower-enrichment fuel. In preparation for the lower-enrichment fuel downselection, planned for 2023, TUM is evaluating multiple conversion scenarios. In this paper, it is demonstrated that a conversion of FRM II to Low-Enriched Uranium (LEU) is scientifically possible when using the novel monolithic U-10Mo fuel system, which is currently in the qualification process. As a research reactor, safety criteria, neutron flux distribution and cycle length are key metrics. To begin, neutronic and thermal-hydraulic models were created based on current technical drawings and relevant material properties. Specifically tailored computational methods and coupling schemes have also been developed to properly evaluate all relevant characteristics for the conversion of the FRM II reactor. Using these models and methods, a systematic parameter study was performed to explore the defined design space. The results of that study indicate that many LEU designs using monolithic U-10Mo appear to be viable to convert FRM II to LEU. One example of an LEU solution for the FRM II reactor that fulfills the stated safety, compatibility and scientific performance requirements is discussed in more detail.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Mutual capacitance of liquid conductors in deformable tactile sensing arrays

Advances in highly deformable electronics are needed in order to enable emerging categories of soft computing devices ranging from wearable electronics, to medical devices, and soft robotic components. The combination of highly elastic substrates with intrinsically stretchable conductors holds the promise of enabling electronic sensors that can conform to curved objects, reconfigurable displays, or soft biological tissues, including the skin. Here, we contribute sensing principles for tactile (mechanical image) sensors based on very low modulus polymer substrates with embedded liquid metal microfluidic arrays. The sensors are fabricated using a single-step casting method that utilizes fine nylon filaments to produce arrays of cylindrical channels on two layers. The liquid metal (gallium indium alloy) conductors that fill these channels readily adopt the shape of the embedding membrane, yielding levels of deformability greater than 400%, due to the use of soft polymer substrates. We modeled the sensor performance using electrostatic theory and continuum mechanics, yielding excellent agreement with experiments. Using a matrix-addressed capacitance measurement technique, we are able to resolve strain distributions with millimeter resolution over areas of several square centimeters.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Molecular hydrodynamics: Vortex formation and sound wave propagation

In the present study, quantitative feasibility tests of the hydrodynamic description of a two-dimensional fluid at the molecular level are performed, both with respect to length and time scales. Using high-resolution fluid velocity data obtained from extensive molecular dynamics simulations, we computed the transverse and longitudinal components of the velocity field by the Helmholtz decomposition and compared them with those obtained from the linearized Navier-Stokes (LNS) equations with time-dependent transport coefficients. By investigating the vortex dynamics and the sound wave propagation in terms of these field components, we confirm the validity of the LNS description for times comparable to or larger than several mean collision times. The LNS description still reproduces the transverse velocity field accurately at smaller times, but it fails to predict characteristic patterns of molecular origin visible in the longitudinal velocity field. Based on these observations, we validate the main assumptions of the mode-coupling approach. The assumption that the velocity autocorrelation function can be expressed in terms of the fluid velocity field and the tagged particle distribution is found to be remarkably accurate even for times comparable to or smaller than the mean collision time. This suggests that the hydrodynamic-mode description remains valid down to the molecular scale.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Optimal net-load balancing in smart grids with high PV penetration

Mitigating mismatches in supply demand curve is critical for smooth power grid operation. Traditionally, load curtailment techniques such as Demand Response (DR) have been used for this purpose. However, smart grids with high PV penetration sometimes exhibit supply surplus causing over-voltages. Thus, load curtailment techniques cannot be the only component of a net-load balancing framework. Supply curtailment techniques such as Volt-Var Optimizations are complex and computationally expensive. This increases the complexity of net-load balancing systems used by the grid operator and limits their scalability. Recently, new technologies have been developed that enable the rapid and selective connection of PV modules of an installation to the grid. Taking advantage of these advancements, we develop a unified optimal net-load balancing framework which performs both load and solar curtailment. We show that when the available curtailment values are discrete, this problem is NP-hard and develop bounded approximation algorithms for minimizing the curtailment cost. Our algorithms produce fast solutions, given the tight timing constraints required for grid operation. We also incorporate the notion of fairness to ensure that curtailment is evenly distributed among all the nodes. Finally, we develop an online algorithm which performs net-load balancing using only data available for the current interval. Using both theoretical analysis and practical evaluations, we show that our net-load balancing algorithms provide solutions which are close to optimal in a small amount of time.

14 SOLAR ENERGY↗

Integrating Cache Performance Modeling and Tuning Support in Parallelization Tools

With the resurgence of distributed shared memory (DSM) systems based on cache-coherent Non Uniform Memory Access (ccNUMA) architectures and increasing disparity between memory and processors speeds, data locality overheads are becoming the greatest bottlenecks in the way of realizing potential high performance of these systems. While parallelization tools and compilers facilitate the users in porting their sequential applications to a DSM system, a lot of time and effort is needed to tune the memory performance of these applications to achieve reasonable speedup. In this paper, we show that integrating cache performance modeling and tuning support within a parallelization environment can alleviate this problem. The Cache Performance Modeling and Prediction Tool (CPMP), employs trace-driven simulation techniques without the overhead of generating and managing detailed address traces. CPMP predicts the cache performance impact of source code level "what-if" modifications in a program to assist a user in the tuning process. CPMP is built on top of a customized version of the Computer Aided Parallelization Tools (CAPTools) environment. Finally, we demonstrate how CPMP can be applied to tune a real Computational Fluid Dynamics (CFD) application.

Waheed, Abdul↗

Complex Dynamics of Air Traffic Flow

Air traffic in the United States has continued to grow at a steady pace since 1980, except for a dip immediately after the tragic events of September 11, 2001. There are different growth scenarios associated both with the magnitude and the composition of the future air traffic. The Terminal Area Forecast (TAF), prepared every year by the FAA, projects the growth of traffic in the United States. Both Boeing and Airbus publish market outlooks for air travel annually. Although predicting the future growth of traffic is difficult, there are two significant trends: heavily congested major airports continue to see an increase in traffic, and the emergence of regional jets and other smaller aircraft with fewer passengers operating directly between non-major airports. The interaction between air traffic demand and the ability of the system to provide the necessary airport and airspace resources can be modeled as a network. The size of the resulting network varies depending on the choice of its nodes. It would be useful to understand the properties of this network to guide future design and development. Many questions, such as the growth of delay with increasing traffic demand and impact of the en route weather on future air traffic, require a systematic understanding of the properties of the air traffic network. There has been a major advance in the understanding of the behavior of networks with a large number of components. Several theories have been advanced about the evolution of large biological and engineering networks by authors in diversified disciplines like physics, mathematics, biology and computer science. Several networks exhibit a scale-free property in the sense that the probabilistic distribution of their nodes as a function of connections decreases slower than an exponential. These networks are characterized by the fact that a small number of components have a disproportionate influence on the performance of the network. Scale-free networks are tolerant to random failure of components, but are vulnerable to selective attack on components. This paper examines two network representations for the baseline air traffic system. A network defined with the 40 major airports as nodes and with standard flight routes as links has a characteristic scale: all nodes have 60 or more links and no node has more than 460 links. Another network is defined with baseline aircraft routing structure exhibits an exponentially truncated scale-free behavior. Its degree ranges from 2 connections to 2900 connections, and 225 nodes have more than 250 connections. Furthermore, those high-degree nodes are homogeneously distributed in the airspace. A consequence of this scale-free behavior is that the random loss of a single node has little impact, but the loss of multiple high-degree nodes (such as occurs during major storms in busy airspace) can adversely impact the system. Two future scenarios of air traffic growth are used to predict the growth of air traffic in the United States. It is shown that a three-times growth in the overall traffic may result in a ten-times impact on the density of traffic in certain parts of the United States.

Scale-free Networks↗

The Influence of Grain Boundaries on Radiation-Induced Point Defect Production in Materials: A Review of Atomistic Studies

Radiation-induced defects cause severe degradation of materials properties during irradiation that can ultimately cause the material to fail. Consequences of these defects include swelling, embrittlement, and undesirable phase transformations. Nanocrystalline materials, which contain a high density of grain boundaries, have demonstrated enhanced radiation tolerance compared to large grain counterparts under certain conditions. This is because, as has long been recognized, grain boundaries can serve as defect sinks for absorbing and annihilating radiation-induced defects. Increasingly, researchers have examined how grain boundaries influence the direct production of defects during collision cascade, the origin of the radiation-induced defects. In this review article, we analyze the computational studies in this area that have been performed during the past two decades. These studies examine defect production near grain boundaries in metallic, ionic, and covalent systems. It is found that, in most systems, grain boundaries absorb more interstitials than vacancies during the defect production stage. While this is generically true of most boundaries, the detailed interaction between defects and grain boundaries does depend on boundary atomic structure, the stress state near the boundary, cascade-boundary separation, and materials properties. Furthermore, the defect distribution near boundaries is qualitatively different from that in single crystals, with the former often exhibiting larger vacancy clusters and smaller interstitial clusters than the latter. Finally, grain boundaries that are damaged after cascades have occurred exhibit different interaction behavior with defects than their pristine counterparts. Together, these atomistic simulation results provide useful insight for both developing higher-level modeling of defect evolution at long timescales and how interfaces influence radiation damage evolution.

36 MATERIALS SCIENCE↗

A Simulation Study of Quantum Clock Synchronization Using Teleportation

An important requirement in implementing distributed computing and sensing application is the synchronization of clocks at various locations. The Internet relies on the Network Time Protocol (NTP), which synchronizes clocks with accuracy in the order of milliseconds. More recently an ensemble of atomic clocks is used for navigation based on GPS. These clocks are highly accurate and provide time with very low uncertainty. Even so, many physics experiments such as distributed LIGO-based systems may require more accurate clock synchronization that is achievable using quantum entanglement. This requires the deployment of a network of quantum clocks synchronized by exploiting entangled atomic clock qubits. In this paper, we carry out a simulation study of synchronizing a network of quantum clocks interconnected by a fiber plant that supports the ESnet; the latter is used to support the classical communication needed for teleportation. We consider an existing protocol for synchro-nizing the atomic clock qubits that relies on the GHZ states. To assess the performance of the protocol we developed a discrete-event simulation of the network using IBM Qiskit framework for underlying quantum gate operations and measurements. The simulation results shed light on the resources required in terms of the number entangled qubits and the time needed to achieve the synchronization of different number of nodes in ESnet.

Kiran, Mariam↗

Highly scalable distributed-memory sparse triangular solution algorithms.

This paper presents a highly efficient distributed-memory parallel sparse triangular solver. The triangular solution phase is often performed following factorization phase in the sparse linear solvers and has become increasingly computa­tionally expensive for direct solvers with many right hand sides (RHSs) or preconditioned iterative solvers. However, the low arithmetic intensity and sequential nature of the triangular solve algorithm pose performance challenges for its large-scale distributed-memory parallelization. In this work, we propose several strategies to enhance scalability of an algorithm with 2D block cyclic process layout. First, an asynchronous binary-tree-based communication scheme implemented via non-blocking MPI functions is leveraged to broadcast partial solutions and reduce partial updates among a subset of processes for each block column and row of the triangular matrix, respectively. This scheme reduces message latency, improves communication load balance and significantly accelerates asynchronous execution of the triangular solve. In addition, efficient BLAS operations and threading implementations are exploited to accelerate local computations and further reduce process idle time. The proposed strategies are implemented in SuperLU_DIST and numerical experiments show up to 4.4x improvement with one right-hand side and up to 6.1x improvement with 50 right- hand sides on 4096 processes, compared to the current release. This is the first time that sparse triangular solution is demonstrated strong scaling on more than 4000 cores.

Liu, Yang↗

Influence of turbulence and thermophysical fluid properties on cavitation erosion predictions in channel flow geometries

Cavitation and cavitation-induced erosion have been observed in fuel injectors in regions of high acceleration and low pressure. Although these phenomena can have a large influence on the performance and lifetime of injector hardware, questions still remain on how these physics should be accurately and efficiently represented within a computational fluid dynamics model. While several studies have focused on the validation of cavitation predictions within canonical and realistic injector geometries, it is not well documented what influence the numerical and physical parameters selected to represent turbulence and phase change will have on the predictions for cavitation erosion propensity and severity. In this work, a range of numerical and physical parameters are evaluated within the mixture modeling approach in CONVERGE to understand their influence on predictions of cavitation, condensation and erosion. Particular attention is paid to grid resolution, turbulence model and near-wall treatment, fuel surrogate properties, and non-condensable gas content. Assessment of cavitation predictions are conducted through comparison of measured and predicted mass flow rates and cavitation probability distributions for flow through a channel with a sharp inlet. Predictions for hydrodynamic impact loading and cavitation erosion are compared with the experimentally measured incubation period and critical site for erosion. Based on these findings, recommendations are provided for modeling turbulent cavitating flows, using the single fluid mixture modeling approach, to improve predictions for cavitation-induced erosion. In particular, to capture the fluid dynamic phenomena characterizing cavitation cloud formation, development and shedding, a Large Eddy simulation with grid resolution as fine as 2.50 μm is recommended. The assumed concentration of non-condensable gas content is observed to have a strong influence on the predicted cavitation erosion severity, which motivates the need for dissolved gas concentration measurements for future cavitation erosion experimental studies. Using the best practices established in this work, good agreement is achieved between the measured and predicted cavitation parameters, as well as the critical site for cavitation-induced erosion.

Magnotti, Gina Maureen↗

Synapse: Synthetic application profiler and emulator

Abstract Motivated by the need to emulate workload execution characteristics on high- performance and distributed heterogeneous resources, we introduce Synapse. Synapse is used as a proxy application (or "representative application") for real workloads, with the advantage that it can be tuned in different ways and dimensions, and also at levels of granularity that are not possible with real applications. Synapse has a platform-independent application profiler, and has the ability to emulate profiled workloads on a variety of resources. Experiments show that the automated profiling performed using Synapse captures an application's characteristics with high fidelity. The emulation of an application using Synapse can reproduce the application's execution behavior in the original run- time environment, and can also reproduce those behaviors on different run-time environments.

97 MATHEMATICS AND COMPUTING↗

Systematic Validation of Ensemble Cloud-Process Simulations using Polarimetric Radar Observations and Simulator over the NASA Wallops Flight Facility

The BiLateral Operational Storm-Scale Observation and Modeling (BLOSSOM) project was initiated to establish a long-term supersite to improve understanding of cloud physical states and processes as well as to support satellite and climate model programs over the WFF site via a bilateral approach of storm-scale observations and process modeling. This study highlights a noble systematic validation framework of the BLOSSOM ensemble cloud-process simulations through mixed-phase, light-rain, and deep-convective precipitation cases. The framework consists of creating a domain-shifted ensemble of large-scale forcing datasets, and configuring and performing cloud-process simulations with three different bulk microphysics schemes. Validation uses NASA S-band dual-POLarimetric radar (NPOL) observations in the form of statistical composites and skill scores via a polarimetric radar simulator and newly developed CfRad Data tool (CfRAD). While the simulations capture the overall structures of the reflectivity composites, polarimetric signals are still poorly simulated, mainly due to a lack of representation of ice microphysics diversity in shapes, orientation distributions, and their complex mixtures. Despite the limitation, this new ensemble-based validation framework demonstrates that 1) no particular forcing or microphysics scheme outperforms the rest and 2) the skill scores of coarse- and fine-resolution ensemble simulations with different domain-shifted forcing and microphysics schemes are highly correlated with each other with no clear improvement. On the other hand, this suggests that coarse-resolution ensemble simulations are relevant for selecting the best meteorological forcing and microphysics scheme before conducting computationally demanding large eddy simulations (LESs) in support of aircraft and satellite instrument development as well as cloud-precipitation-convection parameterizations.

54 ENVIRONMENTAL SCIENCES↗

Multidimensional Distributional Neural Network Output Demonstrated in Super‐Resolution of Surface Wind Speed

Accurate quantification of uncertainty in neural network predictions remains a central challenge for scientific applications involving high-dimensional, correlated data. While existing methods capture either aleatoric or epistemic uncertainty, few offer closed-form, multidimensional distributions that preserve spatial correlation while remaining computationally tractable. In this work, we present a framework for training neural networks with a multidimensional Gaussian loss, generating a closed-form predictive distribution over outputs informed by non-identically distributed training data. Our approach captures aleatoric uncertainty by iteratively estimating the means and covariance matrices, and is demonstrated on a super-resolution example out-of-training-sample. We leverage a Fourier representation of the covariance matrix to stabilize network training and preserve spatial correlation. We introduce a novel regularization strategy—referred to as information sharing—that interpolates between image-specific and global covariance estimates, enabling convergence of the super-resolution downscaling network trained on image-specific distributional loss functions. This framework allows for efficient sampling, explicit correlation modeling, and extensions to more complex distribution families all without disrupting prediction performance. We demonstrate the method on a surface wind speed downscaling task and discuss its broader applicability to uncertainty-aware prediction in scientific models.

17 WIND ENERGY↗