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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 1,711 records · Page 95
All sourcesNASA NTRSDOE OSTI
DOE OSTI2013

Needle segmentation using 3D Hough transform in 3D TRUS guided prostate transperineal therapy

Purpose: Prostate adenocarcinoma is the most common noncutaneous malignancy in American men with over 200 000 new cases diagnosed each year. Prostate interventional therapy, such as cryotherapy and brachytherapy, is an effective treatment for prostate cancer. Its success relies on the correct needle implant position. This paper proposes a robust and efficient needle segmentation method, which acts as an aid to localize the needle in three-dimensional (3D) transrectal ultrasound (TRUS) guided prostate therapy. Methods: The procedure of locating the needle in a 3D TRUS image is a three-step process. First, the original 3D ultrasound image containing a needle is cropped; the cropped image is then converted to a binary format based on its histogram. Second, a 3D Hough transform based needle segmentation method is applied to the 3D binary image in order to locate the needle axis. The position of the needle endpoint is finally determined by an optimal threshold based analysis of the intensity probability distribution. The overall efficiency is improved through implementing a coarse-fine searching strategy. The proposed method was validated in tissue-mimicking agar phantoms, chicken breast phantoms, and 3D TRUS patient images from prostate brachytherapy and cryotherapy procedures by comparison to the manual segmentation. The robustness of the proposed approach was tested by means of varying parameters such as needle insertion angle, needle insertion length, binarization threshold level, and cropping size. Results: The validation results indicate that the proposed Hough transform based method is accurate and robust, with an achieved endpoint localization accuracy of 0.5 mm for agar phantom images, 0.7 mm for chicken breast phantom images, and 1 mm for in vivo patient cryotherapy and brachytherapy images. The mean execution time of needle segmentation algorithm was 2 s for a 3D TRUS image with size of 264 Multiplication-Sign 376 Multiplication-Sign 630 voxels. Conclusions: The proposed needle segmentation algorithm is accurate, robust, and suitable for 3D TRUS guided prostate transperineal therapy.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2014

SU-E-I-30: Image Analysis in Ultrasonography for Diagnosis of Sjoegren's Syndrome Using Dual-Tree Complex Wavelet Transform

Purpose: Sjoegren's syndrome (SS) is an autoimmune disease invading mainly salivary and lacrimal glands. Ultrasonography is used for an initial and non-invasive examination of this disease. However, the ultrasonography diagnosis tends to lack in objectivity and depends on the operator's skills. The purpose of this study is to propose a computer-aided diagnosis (CAD) system for SS based on a dual-tree complex wavelet transform (DT-CWT) and machine learning. Methods: The subjects of this study were 174 patients suspected of having SS at Nagasaki University Hospital and examined with ultrasonography of the parotid glands. Out of these patients, 77 patients were diagnosed with SS by sialography. A region of interest (ROI) of 128 × 128 pixels was set within the parotid gland that was indicated by a dental radiologist. The DT-CWT was applied to the images in the ROI and every image was decomposed into 72 sub-images of the real and imaginary components in six different resolution levels and six orientations. The statistical features of the sub-image were calculated and used as data input for the support vector machine (SVM) classifier for the detection of SS. A ten-fold cross-validation was employed to verify the Resultof SVM. The accuracy of diagnosis was compared by a CAD system with a human observer performance. Results: The sensitivity, specificity, and accuracy in the detection of SS were 95%, 86%, and 91% through our CAD system respectively, while those by a human observer were 84%, 81%, and 83% respectively. Conclusion: The proposed computer-aided diagnosis system for Sjoegren's syndrome in ultrasonography based on dual-tree complex wavelet transform had a better performance than a human observer.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2014

WE-D-9A-04: Improving Multi-Modality Image Registration Using Edge-Based Transformations

Purpose: Multi-modality deformable image registration (DIR) for head and neck (HN) radiotherapy is difficult, particularly when matching computed tomography (CT) scans with magnetic resonance imaging (MRI) scans. We hypothesized that the ‘shared information’ between images of different modalities was to be found in some form of edge-based transformation, and that novel edge-based DIR methods might outperform standard DIR methods. Methods: We propose a novel method that combines gray-scale edge-based morphology and mutual information (MI) in two stages. In the first step, we applied a modification of a previously published mathematical morphology method as an efficient gray scale edge estimator, with denoising function. The results were fed into a MI-based solver (plastimatch). The method was tested on 5 HN patients with pretreatment CT and MR datasets and associated follow-up weekly MR scans. The followup MRs showed significant regression in tumor and normal structure volumes as compared to the pretreatment MRs. The MR images used in this study were obtained using fast spin echo based T2w images with a 1 mm isotropic resolution and FOV matching the CT scan. Results: In all cases, the novel edge-based registration method provided better registration quality than MI-based DIR using the original CT and MRI images. For example, the mismatch in carotid arteries was reduced from 3–5 mm to within 2 mm. The novel edge-based method with different registration regulation parameters did not show any distorted deformations as compared to the non-realistic deformations resulting from MI on the original images. Processing time was 1.3 to 2 times shorter (edge vs. non-edge). In general, we observed quality improvement and significant calculation time reduction with the new method. Conclusion: Transforming images to an ‘edge-space,’ if designed appropriately, greatly increases the speed and accuracy of DIR.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2016

SU-G-IeP1-01: A Novel MRI Post-Processing Algorithm for Visualization of the Prostate LDR Brachytherapy Seeds and Calcifications Based On B0 Field Inhomogeneity Correction and Hough Transform

Purpose: This study aims at developing an MRI-only workflow for post-implant dosimetry of the prostate LDR brachytherapy seeds. The specific goal here is to develop a post-processing algorithm to produce positive contrast for the seeds and prostatic calcifications and differentiate between them on MR images. Methods: An agar-based phantom incorporating four dummy seeds (I-125) and five calcifications of different sizes (from sheep cortical bone) was constructed. Seeds were placed arbitrarily in the coronal plane. The phantom was scanned with 3T Philips Achieva MR scanner using an 8-channel head coil array. Multi-echo turbo spin echo (ME-TSE) and multi-echo gradient recalled echo (ME-GRE) sequences were acquired. Due to minimal susceptibility artifacts around seeds, ME-GRE sequence (flip angle=15; TR/TE=20/2.3/2.3; resolution=0.7×0.7×2mm3) was further processed.The induced field inhomogeneity due to the presence of titaniumencapsulated seeds was corrected using a B0 field map. B0 map was calculated using the ME-GRE sequence by calculating the phase difference at two different echo times. Initially, the product of the first echo and B0 map was calculated. The features corresponding to the seeds were then extracted in three steps: 1) the edge pixels were isolated using “Prewitt” operator; 2) the Hough transform was employed to detect ellipses approximately matching the dimensions of the seeds and 3) at the position and orientation of the detected ellipses an ellipse was drawn on the B0-corrected image. Results: The proposed B0-correction process produced positive contrast for the seeds and calcifications. The Hough transform based on Prewitt edge operator successfully identified all the seeds according to their ellipsoidal shape and dimensions in the edge image. Conclusion: The proposed post-processing algorithm successfully visualized the seeds and calcifications with positive contrast and differentiates between them according to their shapes. Further assessments on more realistic phantoms and patient study are required to validate the outcome.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2021

Transformation between elastic dipoles, quadrupoles, octupoles, and hexadecapoles driven by surfactant self-assembly in nematic emulsion

Emulsions comprising isotropic fluid drops within a nematic host are of interest for applications ranging from biodetection to smart windows, which rely on changes of molecular alignment structures around the drops in response to chemical, thermal, electric, and other stimuli. We show that absorption or desorption of trace amounts of common surfactants can drive continuous transformations of elastic multipoles induced by the droplets within the uniformly aligned nematic host. Out-of-equilibrium dynamics of director structures emerge from a controlled self-assembly or desorption of different surfactants at the drop-nematic interfaces, with ensuing forward and reverse transformations between elastic dipoles, quadrupoles, octupoles, and hexadecapoles. We characterize intertransformations of droplet-induced surface and bulk defects, probe elastic pair interactions, and discuss emergent prospects for fundamental science and applications of the reconfigurable nematic emulsions.

36 MATERIALS SCIENCE↗
DOE OSTI2013

Symmetry transformation in the problem of the conductivity of anisotropic composites

A transformation of the coordinates, current density, and electric field strength has been proposed such that holds the direct-current equations. One of the components of a composite can be made isotropic by choosing the coefficients of the transformation. This allows the generalization of the standard theory of the effective medium to the case of an anisotropic composite with inclusions of an arbitrary shape.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2019

Transformation of Radiation-Induced Molecular Point Defects and Color Centers in LiF Crystals under Influence of Light

The influences of UV light and integral light pulses from lamps on γ-irradiated LiF crystals with impurities of hydroxyl and magnesium ions have been investigated. The optical absorption and luminescence of color centers in different bleaching stages are studied depending on the crystal exposure time under UV light or on the number of light pulses. IR spectra of molecular hydrogen-bonded complexes and hydroxyl ions in different bleaching stages are presented. The transformation of strong hydrogen-bonded complexes under illumination into complexes with weak hydrogen bond (and vice versa) is studied. It is shown how molecular hydrogen-bonded complexes involving hydroxyl affect the transformation of color centers during the crystal bleaching.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗
DOE OSTI2024

Direct comparison of using a Z -transformation instead of the traditional $Q^2$ for extraction of the proton radius from $e-p$ scattering data

A discrepancy in the determination of the proton’s charge radius, r p , between muonic hydrogen spectroscopy versus classic atomic spectroscopy and electron scattering data has become known as the proton radius puzzle. Extractions of r p from electron scattering data require determination of the slope of the proton’s charge form factor, $G$$^{p}_{E}$, in the limit of Q 2 → 0 through fitting and extrapolation. Some works have presented the Z-transformation fitting technique as the best choice for this type of extraction due to the true functional form of $G$$^{p}_{E}$ being mathematically guaranteed to exist within the parameter-space of the fit function. In this work, we test this claim by examining the mathematical bias and variances introduced by this technique as compared to the more traditional Q 2 fits using statistically sampled $G$$^{p}_{E}$ parameterizations with known input radii. Furthermore, our tests conclude that the quality of the Z-transformation technique depends on the range of data used. In the case of new experiments, the fit function and technique should be selected in advance by generating realistic pseudodata and assessing the power of different techniques.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2024

A Compound Data Poisoning Technique with Significant Adversarial Effects on Transformer-based Sentiment Classification Tasks

Transformer-based models have demonstrated much success in various natural language processing tasks. However, they are often vulnerable to adversarial attacks, such as data poisoning, which can intentionally fool the model into generating incorrect results. In this article, we present a novel, compound variant of a data poisoning attack on a transformer-based model that maximizes the poisoning effect while minimizing the scope of poisoning. Here we do so by combining the established data poisoning technique (label flipping) with a novel adversarial artifact selection and insertion technique aimed at minimizing detectability and the scope of the poisoning footprint. We find that by using a combination of these two techniques, we achieve a state-of-the-art attack success rate of approximately 90% while poisoning only 0.5% of the original training set, thus minimizing the scope and detectability of the poisoning action. These findings have the potential to advance the development of better data poisoning detection methods.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2014

Dynamic mechanical analysis of phase transformations and anelastic relaxation in stabilized Zirconias

Elastic properties of polycrystalline stabilized zirconias, namely Yttria Stabilized Zirconia (YSZ) and Scandia, Ceria Stabilized Zirconia (SCSZ), were studied by Dynamic Mechanical Analyzer (DMA) in air. Changes of storage modulus E', loss modulus E" and mechanical damping (tanδ) with temperature were simultaneously monitored at various frequencies. In 8 mol% (8YSZ) and 10 mol% (10YSZ) Yttria Stabilized Zirconia, a drop in storage modulus of ~37% was observed in the 30°C to 400°C temperature range, together with two frequency dependent damping peaks. While the first tanδ peak can be attributed to the anelastic relaxation of (Y'ZrVO••)• elastic (and dielectric) dipoles, the second one is probably the result of local ordering of oxygen vacancies and/or relaxation of (2Y'ZrVO••)x dipoles. For cubic SCSZ, four damping peaks were observed in the similar temperature regime accompanied by significant nonlinear drop of the storage modulus. The first tanδ is attributed to anealstic relaxation of (Sc'ZrVO••)•. Furthermore, it was also found that stress induced phase transformation from cubic to rhombohedral structure is the reason for the frequency dependent third peak in the tanδ spectra while the fourth frequency independent peak was found to be the result of the phase transformation from rhombohedral to cubic structure.

36 MATERIALS SCIENCE↗
DOE OSTI2016

Dual Active Bridge based DC Transformer LabVIEW FPGA Control Code [SWR-16-25]

In the area of power electronics control, Field Programmable Gate Arrays (FPGAs) have the capability to outperform their Digital Signal Processor (DSP) counterparts due to the FPGA’s ability to implement true parallel processing and therefore facilitate higher switching frequencies, higher control bandwidth, and/or enhanced functionality. National Instruments (NI) has developed two platforms, Compact RIO (cRIO) and Single Board RIO (sbRIO), which combine a real-time processor with an FPGA. The FPGA can be programmed with a subset of the well-known LabVIEW graphical programming language. The candidate software implements complete control algorithms in LabVIEW FPGA for a DC Transformer (DCX) based on a dual active bridge (DAB). A DCX is an isolated bi-directional DC-DC converter designed to operate at unity conversion ratio, M, defined by where Vin is the primary-side DC bus voltage, Vout is the secondary-side DC bus voltage, and n is the turns ratio of the embedded high frequency transformer (HFX). The DCX based on a DAB incorporates two H-bridges, a resonant inductor, and an HFX to provide this functionality. The candidate software employs phase-shift modulation of the two H-bridges and a feedback loop to regulate the conversion ratio at unity. The software also includes alarm-handling capabilities as well as debugging and tuning tools. The software fits on the Xilinx Virtex V LX110 FPGA embedded in the NI cRIO-9118 FPGA chassis, and with a 40 MHz base clock, supports a modulation update rate of 40 MHz, and user-settable switching frequencies and synchronized control loop update rates of tens of kHz.

Source record↗
DOE OSTI2025

SOHIP Abel Transform and Onion Peeling Model Module

This software provides tools for analyzing and modeling physical systems using mathematical transforms and layered models. It includes (1) functions for performing the Abel transform, which is used to relate measurements of bending angles to properties such as refractive index and radius in a medium. The code can compute bending angles from input profiles and also reconstruct these profiles from observed data; (2) the functions for modeling systems with multiple layers using an onion-peeling approach, allowing users to simulate and analyze the behavior of layered materials or structures. These capabilities are useful for researchers and engineers working in fields such as optics, atmospheric science, and materials analysis, enabling them to interpret and model data from experiments or simulations relates to refraction in spherical symmetric medium.

Xu, Shuang [Lawrence Livermore National Laboratory↗
DOE OSTI2020

Impacts of Ice-Shelf Melting on Water-Mass Transformation in the Southern Ocean from E3SM Simulations

Abstract The Southern Ocean overturning circulation is driven by winds, heat fluxes, and freshwater sources. Among these sources of freshwater, Antarctic sea ice formation and melting play the dominant role. Even though ice-shelf melt is relatively small in magnitude, it is located close to regions of convection, where it may influence dense water formation. Here, we explore the impacts of ice-shelf melting on Southern Ocean water-mass transformation (WMT) using simulations from the Energy Exascale Earth System Model (E3SM) both with and without the explicit representation of melt fluxes from beneath Antarctic ice shelves. We find that ice-shelf melting enhances transformation of Upper Circumpolar Deep Water, converting it to lower density values. While the overall differences in Southern Ocean WMT between the two simulations are moderate, freshwater fluxes produced by ice-shelf melting have a further, indirect impact on the Southern Ocean overturning circulation through their interaction with sea ice formation and melting, which also cause considerable upwelling. We further find that surface freshening and cooling by ice-shelf melting cause increased Antarctic sea ice production and stronger density stratification near the Antarctic coast. In addition, ice-shelf melting causes decreasing air temperature, which may be directly related to sea ice expansion. The increased stratification reduces vertical heat transport from the deeper ocean. Although the addition of ice-shelf melting processes leads to no significant changes in Southern Ocean WMT, the simulations and analysis conducted here point to a relationship between increased Antarctic ice-shelf melting and the increased role of sea ice in Southern Ocean overturning.

Jeong, Hyein↗
DOE OSTI2019

Managing code transformations for better performance portability

Code optimization is an intricate task that is getting more complex as computing systems evolve. Managing the program optimization process, including the implementation and evaluation of code variants, is tedious, inefficient, and errors are likely to be introduced in the process. Moreover, because each platform typically requires a different sequence of transformations to fully harness its computing power, the optimization process complexity grows as new platforms are adopted. To address these issues, systems and frameworks have been proposed to automate the code optimization process. They, however, have not been widely adopted and are primarily used by experts with deep knowledge about underlying architecture and compiler intricacies. This article describes the requirements that we believe necessary for making automatic performance tuning more broadly used, especially in complex, long-lived high-performance computing applications. Besides discussing limitations of current systems and strategies to overcome these, we describe the design of a system that is able to semi-automatically generate efficient platform-specific code. In the proposed system, the code optimization is programmer-guided, separately from application code, on an external file in what we call optimization programming. The language to program the optimization process is able to represent complex collections of transformations and, as a result, generate efficient platform-specific code. A database manages different optimized versions of code regions, providing a pragmatic approach to performance portability, and the framework itself has separate components, allowing the optimized code to be used on systems without installing all of the modules required for the code generation. We present experiments on two different platforms to illustrate the generation of efficient platform-specific code that performs comparable to hand-optimized, vendor-provided code.

Computer Science↗
DOE OSTI2024

Broadband rapid-scanning phase-modulated Fourier transform electronic spectroscopy

We present a phase-modulated approach for ultrabroadband Fourier transform electronic spectroscopy. To overcome the bandwidth limitations and spatial chirp introduced by acousto-optic modulators (AOMs), pulses from a 1 µm laser are modulated using AOMs prior to continuum generation. This phase modulation is transferred to the continuum generated in a yttrium aluminum garnet crystal. Separately generated phase-modulated continua in two arms of a Mach-Zehnder interferometer interfere with the difference of their modulation frequencies, enabling physical under-sampling of the signal and the suppression of low-frequency noise. By interferometrically tracking the relative time delay of the continua, we perform continuous, rapid-scanning Fourier transform electronic spectroscopy with a high signal-to-noise ratio and spectral resolution. As proof of principle, we measure the linear absorption and fluorescence excitation spectra of a laser dye and various biological samples.

Javed, Ariba↗
DOE OSTI2013

Constitutive CCND1/CDK2 Activity Substitutes for p53 Loss, or MYC or Oncogenic RAS Expression in the Transformation of Human Mammary Epithelial Cells

Cancer develops following the accumulation of genetic and epigenetic alterations that inactivate tumor suppressor genes and activate proto-oncogenes. Dysregulated cyclin-dependent kinase (CDK) activity has oncogenic potential in breast cancer due to its ability to inactivate key tumor suppressor networks and drive aberrant proliferation. Accumulation or overexpression of cyclin D1 (CCND1) occurs in a majority of breast cancers and over-expression of CCND1 leads to accumulation of activated CCND1/CDK2 complexes in breast cancer cells. We describe here the role of constitutively active CCND1/CDK2 complexes in human mammary epithelial cell (HMEC) transformation. A genetically-defined, stepwise HMEC transformation model was generated by inhibiting p16 and p53 with shRNA, and expressing exogenous MYC and mutant RAS. By replacing components of this model, we demonstrate that constitutive CCND1/CDK2 activity effectively confers anchorage independent growth by inhibiting p53 or replacing MYC or oncogenic RAS expression. These findings are consistent with several clinical observations of luminal breast cancer sub-types that show elevated CCND1 typically occurs in specimens that retain wild-type p53, do not amplify MYC, and contain no RAS mutations. Taken together, these data suggest that targeted inhibition of constitutive CCND1/CDK2 activity may enhance the effectiveness of current treatments for luminal breast cancer.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

Aligned FTICR-MS, Respiration, and Biochemical Transformation Data from Columbia River Sediment Incubations Associated with: “Carbon Limitation Leads to Thermodynamic Regulation of Aerobic Metabolism”

Columbia River hyporheic zone sediments from the Hanford Site 300 Area in eastern Washington were incubated in a full factorial design with different organic matter (OM) amendments. The aim of the experiment was to test the influence of OM thermodynamics on aerobic respiration across different organic carbon pools and concentrations. This dataset is comprised of (1) a csv with high resolution characterization of dissolved organic matter via 12 Tesla Fourier transform ion cyclotron resonance mass spectrometry (FTICR-MS) analyzed through the Environmental Molecular Sciences Laboratory (EMSL; https://www.pnnl.gov/environmental-molecular-sciences-laboratory), (2) a csv with sample IDs, replicates, amendments, dissolved oxygen (DO) measurements, and sampling time points, (3) a csv with sample IDs, replicates, respiration rates, FTICR summary metrics, and relative abundance of chemical classes; and (4) a csv with the number of chemical transformations in each sample replicate (microcosm). The data are associated with the publication “Carbon Limitation Leads to Thermodynamic Regulation of Aerobic Metabolism” published in ES&T Letters (Garayburu-Caruso et al., 2020). Please use the data package’s DOI to cite the data package. We ask that you acknowledge the U.S. Department of Energy (DOE) Biological and Environmental Research (BER) Subsurface Biogeochemical Research (SBR) program when using the data. All data are free to be used for any purpose, such as for manuscripts, presentations, and grant proposals. There is no obligation to include data package authors as co-authors.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2016

The influence of fine ferrite formation on the γ/α interface, fine bainite and retained austenite in a thermomechanically-processed transformation induced plasticity steel

We subjected a Fe–0.26C–1.96Si–2Mn with 0.31Mo (wt%) steel to a novel thermomechanical processing route to produce fine ferrite with different volume fractions, bainite, and retained austenite. In two types of fine ferrites were found to be: (i) formed along prior austenite grain boundaries, and (ii) formed intragranularly in the interior of austenite grains. An increase in the volume fraction of fine ferrite led to the preferential formation of blocky retained austenite with low stability, and to a decrease in the volume fraction of bainite with stable layers of retained austenite. Moreover, the difference in the morphology of the bainitic ferrite and the retained austenite after different isothermal ferrite times was found to be responsible for the deterioration of the mechanical properties. The segregation of Mn, Mo, and C at distances of 2–2.5 nm from the ferrite and retained austenite/martensite interface on the retained austenite/martensite site was observed after 2700 s of isothermal hold. Finally, it was suggested that the segregation occurred during the austenite-to-ferrite transformation, and that this would decrease the interface mobility, which affects the austenite-to-ferrite transformation and ferrite grain size.

36 MATERIALS SCIENCE↗