Engineering Papers⌕ Search

SEARCH · Engineering Papers

Results for “Sequence”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 1,711 records · Page 95

Breit and QED Effects in Spectra of the 4s{sup 2} {sup 1}S{sub 0}−4s4p{sup 3}P{sub 1},{sup 1}P{sub 1} Transitions in the Zn Sequence

The 4s{sup 2}–4s4p E{sub 1} transitions for Zn-like ions from Z in the range 30–92 are calculated using the multiconfi guration Dirac–Hartree–Fock (MCDHF) method. The results obtained are in good agreement with other theoretical and experimental data and demonstrate the applicability of this method to high-precision atomic structure calculations of both few-electron systems and large atomic systems, such as Zn-like ions, along the entire isoelectronic sequence. We also report herein the calculations of many-electron quantum electrodynamic (QED) and Breit effects for the {sup 3}P{sub 0}, {sup 3}P{sub 1}, {sup 3}P{sub 2}, and {sup 1}P{sub 1} states for all Zn-like ions in the range 30 ≤ Z ≤ 100.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Effect of NaOH Concentration and Adding Sequences on Structural and Magnetic Properties of Ni{sub 0.4}Co{sub 0.6}Fe{sub 2}O{sub 4} Nanopowders Prepared Via Co-precipitation Route

Ni{sub 0.4}Co{sub 0.6}Fe{sub 2}O{sub 4} nanopowders were prepared via the co-precipitation route followed by annealing treatment. The structural and magnetic properties of the as-synthesized samples were determined by XRD, FT-IR, TG-DSC, and PPMS measurements, respectively. The XRD patterns indicated a single-phase cubic spinel structure for all the Ni-Co ferrite samples, regardless of adding sequences of the reactants or NaOH concentration. The analysis of the XRD patterns revealed that the enhancement in lattice constant with increasing NaOH concentration is related to the prevention of oxidization of Co{sup 2+} ions in the Ni-Co ferrite lattice. The FT-IR spectra indicated that samples prepared in the B process have fewer impurities than those prepared in the A process. The enhancement in saturation magnetization with the increase in sodium hydroxide concentration could be attributed to the strengthening of super-exchange interaction between A and B sublattices, due to replacements of Co{sup 3+} ions (magnetic moment of 0 μ{sub B}) by Co{sup 2+} ions (magnetic moment of 3 μ{sub B}) at B sublattices. The obvious increase in the coercivity field with the increase in concentration of NaOH solutions can be interpreted in terms of enhancement of magneto-crystalline anisotropy that originated from gradual substitutions of Co{sup 3+} ions with Co{sup 2+} ions at the octahedral sites.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Persistence Probabilities of Two-Sided (Integrated) Sums of Correlated Stationary Gaussian Sequences

We study the persistence probability for some two-sided, discrete-time Gaussian sequences that are discrete-time analogues of fractional Brownian motion and integrated fractional Brownian motion, respectively. Our results extend the corresponding ones in continuous time in Molchan (Commun Math Phys 205(1):97–111, 1999) and Molchan (J Stat Phys 167(6):1546–1554, 2017) to a wide class of discrete-time processes.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Existence in the Sense of Sequences of Stationary Solutions for Some Non-Fredholm Integro-Differential Equations

We establish the existence in the sense of sequences of stationary solutions for some reaction-diffusion type equations in appropriate H{sup 2} spaces. It is shown that, under reasonable technical conditions, the convergence in L{sup 1} of the integral kernels implies the existence and convergence in H{sup 2} of solutions. The nonlocal elliptic equations involve second order differential operators with and without the Fredholm property. Bibliography: 21 titles.

97 MATHEMATICS AND COMPUTING↗

Time sequence determination of parent–daughter radionuclides using gamma-spectrometry

The acquisition of time-stamped list (TLIST) data provides additional information useful to gamma-spectrometry analysis. A novel technique is described that uses non-linear least-squares fitting and the Levenberg-Marquardt algorithm to simultaneously determine parent-daughter atoms from time sequence measurements of only the daughter radionuclide. This has been demonstrated for the radioactive decay of short-lived radon progeny (214Pb/214Bi, 212Pb/212Bi) described using the Bateman first-order differential equation. The calculated atoms are in excellent agreement with measured atoms, with a difference of 1.3 – 4.8% for parent atoms and 2.4% - 10.4% for daughter atoms. Measurements are also reported with reduced uncertainty. The technique has potential to redefine gamma-spectrometry analysis.

Burnett, J. L. (ORCID:0000000322586252)↗

Parallel iterative methods for a finite family of sequences of nearly nonexpansive mappings in Hilbert spaces

In this paper, we propose some new parallel iterative methods by the hybrid and shrinking projection to find a common fixed point of a finite family of sequences of nearly nonexpansive mappings in Hilbert spaces when the domain C satisfies diam(C) < ∞. We also give some applications of our main results for the problem of finding a common fixed point of nonexpansive mappings, nonexpansive semi-groups, the problem of finding a common zero point of monotone operators, the system of generalized mixed equilibrium problems and the system of variational inequalities without the condition diam(C) < ∞. Three numerical examples also are given to illustrate the effectiveness of the proposed algorithms.

97 MATHEMATICS AND COMPUTING↗

Large-scale calculations of atomic level and transition properties in the aluminum isoelectronic sequence from Ti X through Kr XXIV, Xe XLII, and W LXII

Large-scale self-consistent multiconfiguration Dirac–Hartree–Fock subsequent relativistic configuration interaction (RCI) calculations are reported for 360 states belonging to the 30 configurations 3s{sup 2}{3l,4l,5l}, 3p{sup 2}{3d,4l}, 3s{3p"2,3d"2}, 3s{3p3d,3p4l,3p5s,3d4l"′}, 3p3d{sup 2}, 3p{sup 3} and 3d{sup 3} with l=0,1,…,n−1 and l{sup ′}=0,1,2 in 17 systems of the aluminum-like isoelectronic sequence: Ti X through Kr XXIV, Xe XLII, and W LXII. Effects from electron correlation are taken into account by means of large expansions in terms of a basis of configuration state functions (CSF) and calculated energy levels are compared with existing theoretical calculations and the NIST Atomic Spectra database. Radiative E1, E2, M1 and M2 transition rates and associated lifetimes of energy levels are presented in online tables. The uncertainties of the calculated energies are very small, on average between 0.02% and 0.05%, which aid new line identifications in laboratory and astronomical spectra and also make it possible to find and rule out misidentifications. The uncertainties of the E1 transition probabilities, based on the agreement between values in the length and velocity gauges, are estimated to be of the order 0.5% for the strong transitions and 25% for the weaker intercombination transitions. The M1 transition values are not sensitive to electron correlation and are believed to be accurate to well within 1%.

74 ATOMIC AND MOLECULAR PHYSICS↗

Energy levels, lifetimes and radiative rates for transitions in the bromine isoelectronic sequence La XXIII-Dy XXXII, W XL

Using the multiconfiguration Dirac–Fock method, calculations for the lowest 62 levels of the ([Ar] 3d{sup 10})4s{sup 2}4p{sup 5}, ([Ar] 3d{sup 10})4s{sup 2}4p{sup 3}4d{sup 2}, ([Ar] 3d{sup 10})4s{sup 2}4p{sup 4}4d, ([Ar] 3d{sup 10})4s4p{sup 6}, and ([Ar] 3d{sup 10})4s4p{sup 5}4d configurations are performed for the bromine isoelectronic sequence La XXIII-Dy XXXII, W XL. Results of energy levels, lifetimes, wavelengths, and electric dipole, magnetic dipole, electric quadrupole, and magnetic quadrupole radiative rates are presented. In order to assess the accuracy of results, independent calculations for W XL have been carried out using the many-body perturbation theory (MBPT) method. Comparisons are made with available theoretical results from other calculations and the observed values of the Atomic Spectra Database of the National Institute of Standards and Technology. Energy levels are estimated to be accurate to better than 1%, and radiative rates (and lifetimes) are accurate to better than 20% for a majority of strong transitions. These results should be useful in many applications of lanthanide ions related to broad area of research such as applied physics, laser physics and fusion science.

74 ATOMIC AND MOLECULAR PHYSICS↗

Calculations of energies, transition rates, and lifetimes for the fluorine-like isoelectronic sequence with Z=31−35

Employing two state-of-the-art methods, multiconfiguration Dirac–Hartree–Fock and second-order many-body perturbation theory, highly accurate calculations are performed for the lowest 200 fine-structure levels arising from the 2l{sup 7},2l{sup 6}3l{sup ′} and 2l{sup 6}4l{sup ′} configurations of the fluorine-like isoelectronic sequence with Z=31−35. Complete and consistent atomic data, including excitation energies, lifetimes, wavelengths, and E1, E2, M1, M2 line strengths, oscillator strengths, and transition rates among these 200 levels are provided. Comparisons are made between the present two data sets, as well as with other available experimental and theoretical values. The present data are accurate enough for identification and deblending of emission lines involving the n=3,4 levels, and are also useful for modeling and diagnosing fusion plasmas.

74 ATOMIC AND MOLECULAR PHYSICS↗

Trajectory of Growth of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Variants in Houston, Texas, January through May 2021, Based on 12,476 Genome Sequences

Certain genetic variants of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) are of substantial concern because they may be more transmissible or detrimentally alter the pandemic course and disease features in individual patients. SARS-CoV-2 genome sequences from 12,476 patients in the Houston Methodist health care system diagnosed from January 1 through May 31, 2021 are reported here. Prevalence of the B.1.1.7 (Alpha) variant increased rapidly and caused 63% to 90% of new cases in the latter half of May. Eleven B.1.1.7 genomes had an E484K replacement in spike protein, a change also identified in other SARS-CoV-2 lineages. Compared with non–B.1.1.7-infected patients, individuals with B.1.1.7 had a significantly lower cycle threshold (a proxy for higher virus load) and significantly higher hospitalization rate. Other variants [eg, B.1.429 and B.1.427 (Epsilon), P.1 (Gamma), P.2 (Zeta), and R.1] also increased rapidly, although the magnitude was less than that in B.1.1.7. Twenty-two patients infected with B.1.617.1 (Kappa) or B.1.617.2 (Delta) variants had a high rate of hospitalization. Breakthrough cases (n = 207) in fully vaccinated patients were caused by a heterogeneous array of virus genotypes, including many not currently designated variants of interest or concern. Finally, in the aggregate, this study delineates the trajectory of SARS-CoV-2 variants circulating in a major metropolitan area, documents B.1.1.7 as the major cause of new cases in Houston, TX, and heralds the arrival of B.1.617 variants in the metroplex.

60 APPLIED LIFE SCIENCES↗

Convolutional neural networks for intra-hour solar forecasting based on sky image sequences

Accurate and timely solar forecasts play an increasingly critical role in power systems. Compared to longer forecasting timescales, very short-term solar forecasting has lagged behind in both research and practice. In this paper, we propose deep convolutional neural networks (CNNs) to provide operational intra-hour (10-minute-ahead to 60-minute-ahead) solar forecasts. We develop two CNN structures inspired by a widely-used CNN architecture. The CNNs are tailored to our solar forecasting regression tasks and rely solely on sky image sequences. Case studies based on six years of data (over 150,000 data points) demonstrate that the best CNN model has forecast skill scores of 20%-39% over the naive persistence of cloudiness benchmark, even at these very short timescales. The CNNs also have consistently superior performance when compared to shallow machine learning models with meteorological predictors, where the improvement averages around 7%. The sensitivity analyses show that the sky image length, resolution, and weather conditions have impacts on the deep learning model accuracy. In our intra-hour problem with specific setups, two sky images with a 10-minute 128 x 128 resolution yield the most accurate forecasts. Current limitations, future work, and deployment challenges and solutions are also discussed.

14 SOLAR ENERGY↗

The sequence d(CGGCGGCCGC) self-assembles into a two dimensional rhombic DNA lattice

Highlights: {yields} This is the first crystal structure of a four-way junction with sticky ends. {yields} Four junction structures bind to each other and form a rhombic cavity. {yields} Each rhombus binds to others to form 'infinite' 2D tiles. {yields} This is an example of bottom-up fabrication of a DNA nano-lattice. -- Abstract: We report here the crystal structure of the partially self-complementary decameric sequence d(CGGCGGCCGC), which self assembles to form a four-way junction with sticky ends. Each junction binds to four others through Watson-Crick base pairing at the sticky ends to form a rhombic structure. The rhombuses bind to each other and form two dimensional tiles. The tiles stack to form the crystal. The crystal diffracted in the space group P1 to a resolution of 2.5 A. The junction has the anti-parallel stacked-X conformation like other junction structures, though the formation of the rhombic net noticeably alters the details of the junction geometry.

60 APPLIED LIFE SCIENCES↗

Mice carrying a complete deletion of the talin2 coding sequence are viable and fertile

Highlights: Black-Right-Pointing-Pointer Mice lacking talin2 are viable and fertile with only a mildly dystrophic phenotype. Black-Right-Pointing-Pointer Talin2 null fibroblasts show no major defects in proliferation, adhesion or migration. Black-Right-Pointing-Pointer Maintaining a colony of talin2 null mice is difficult indicating an underlying defect. -- Abstract: Mice homozygous for several Tln2 gene targeted alleles are viable and fertile. Here we show that although the expression of talin2 protein is drastically reduced in muscle from these mice, other tissues continue to express talin2 albeit at reduced levels. We therefore generated a Tln2 allele lacking the entire coding sequence (Tln2{sup cd}). Tln2{sup cd/cd} mice were viable and fertile, and the genotypes of Tln2{sup cd/+} intercrosses were at the expected Mendelian ratio. Tln2{sup cd/cd} mice showed no major difference in body mass or the weight of the major organs compared to wild-type, although they displayed a mildly dystrophic phenotype. Moreover, Tln2{sup cd/cd} mouse embryo fibroblasts showed no obvious defects in cell adhesion, migration or proliferation. However, the number of Tln2{sup cd/cd} pups surviving to adulthood was variable suggesting that such mice have an underlying defect.

60 APPLIED LIFE SCIENCES↗

Complete genome sequencing and evolutionary analysis of Indian isolates of Dengue virus type 2

Highlights: •Complete genome of Indian DENV-2 was deciphered for the first time in this study. •The recent Indian DENV-2 revealed presence of many unique amino acid residues. •Genotype shift (American to Cosmopolitan) characterizes evolution of DENV-2 in India. •Circulation of a unique clade of DENV-2 in South Asia was identified. -- Abstract: Dengue is the most important arboviral infection of global public health significance. It is now endemic in most parts of the South East Asia including India. Though Dengue virus type 2 (DENV-2) is predominantly associated with major outbreaks in India, complete genome information of Indian DENV-2 is not available. In this study, the full-length genome of five DENV-2 isolates (four from 2001 to 2011 and one from 1960), from different parts of India was determined. The complete genome of the Indian DENV-2 was found to be 10,670 bases long with an open reading frame coding for 3391 amino acids. The recent Indian DENV-2 (2001–2011) revealed a nucleotide sequence identity of around 90% and 97% with an older Indian DENV-2 (1960) and closely related Sri Lankan and Chinese DENV-2 respectively. Presence of unique amino acid residues and non-conservative substitutions in critical amino acid residues of major structural and non-structural proteins was observed in recent Indian DENV-2. Selection pressure analysis revealed positive selection in few amino acid sites of the genes encoding for structural and non-structural proteins. The molecular phylogenetic analysis based on comparison of both complete coding region and envelope protein gene with globally diverse DENV-2 viruses classified the recent Indian isolates into a unique South Asian clade within Cosmopolitan genotype. A shift of genotype from American to Cosmopolitan in 1970s characterized the evolution of DENV-2 in India. Present study is the first report on complete genome characterization of emerging DENV-2 isolates from India and highlights the circulation of a unique clade in South Asia.

60 APPLIED LIFE SCIENCES↗

Identification and molecular cloning of novel transcripts of the human kallikrein-related peptidase 10 (KLK10) gene using next-generation sequencing

Tissue kallikrein and kallikrein-related peptidases (KLKs) form the largest group of serine proteases in the human genome, sharing many structural and functional characteristics. Multiple alternative transcripts have been reported for the most human KLK genes, while many of them are aberrantly expressed in various malignancies, thus possessing significant prognostic and/or diagnostic value. Alternative splicing of cancer-related genes is a common cellular mechanism accounting for cancer cell transcriptome complexity, as it affects cell cycle control, proliferation, apoptosis, invasion, and metastasis. In this study, we describe the identification and molecular cloning of eight novel transcripts of the human KLK10 gene using 3′ rapid amplification of cDNA ends (3′ RACE) and next-generation sequencing (NGS), as well as their expression analysis in a wide panel of cell lines, originating from several distinct cancerous and normal tissues. Bioinformatic analysis revealed that the novel KLK10 transcripts contain new alternative splicing events between already annotated exons as well as novel exons. In addition, investigation of their expression profile in a wide panel of cell lines was performed with nested RT-PCR using variant-specific pairs of primers. Since many KLK mRNA transcripts possess clinical value, these newly discovered alternatively spliced KLK10 transcripts appear as new potential biomarkers for diagnostic and/or prognostic purposes or as targets for therapeutic strategies. - Highlights: • NGS was used to identify novel transcripts of the human KLK10 gene. • 8 novel KLK10 transcripts were identified. • A novel 3′UTR was detected and characterized. • The expression profiles of all 8 novel KLK10 transcripts were identified.

60 APPLIED LIFE SCIENCES↗