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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.
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Sorghum bicolor TX08001 Nodal root development Gene Expression Profiling
Genome-transcriptome
Sorghum bicolor TX08001 Field Water Gene Expression Profiling
Genome-transcriptome
Sorghum bicolor TX08001 Greenhouse Water Gene Expression Profiling
Genome-transcriptome
Sorghum bicolor TX08001 Nodal Root Bud Development Gene Expression Profiling
Genome-transcriptome
Sorghum bicolor TX08001 1.Stem V-phase tissues Gene Expression Profiling
Genome-transcriptome
Sorghum bicolor TX08001 Stem Density Gene Expression Profiling
Genome-transcriptome
Sorghum bicolor TX08001 Stem Density Gene Expression Profiling
Genome-transcriptome
Arabidopsis thaliana strain:Col-0 Raw sequence reads
To investigate transcriptome changes in pir1-1 mutants, we performed RNA sequencing (RNA-seq) analyses in Col-0 and pir1-1at 24 h of adaptive endoplasmic reticulum stress in three biological replicates. Mock controls, which were treated with DMSO, are included.
Natural variation in the consequences of gene overexpression during osmotic stress [RNA-Seq]
RNA-seq and transcriptome analysis of 4 strains (BY4743, BC187, NCYC3290, and YPS128) that were grown in YPD+ 0.7M NaCl. For each strain, 3 samples were collected: T0 (unstressed cells), T30 (30 mins after cells placed in 0.7M NaCl), and T3h (3 hours after cells placed in NaCl). These strains were collected in 3 biological replicates. The library for sample YPS128 Rep 3 T30 failed so this sample is missing and there are a total of 35 samples in the dataset.
PKA regulatory subunit Bcy1 couples growth, lipid metabolism, and fermentation during anaerobic xylose growth in Saccharomyces cerevisiae
Past work from our lab, focused on engineering the budding yeast Saccharomyces cerevisiae for fermentation of the non-native pentose sugar xylose, discovered that hyperactivation of the RAS/Protein Kinase A (PKA) pathway was needed for rapid anaerobic xylose fermentation. Interestingly, the mechanism of PKA hyperactivation has a dramatic impact on growth and metabolism on xylose; deletion of the RAS inhibitor IRA2 permits rapid growth and fermentation, while deletion of the PKA regulatory subunit BCY1 allows for fermentation without growth on xylose. To understand how a single deletion in the PKA pathway can decouple growth and metabolism, we performed transcriptomic analysis of these strains, predicting that altered PKA activity would impact global gene expression and identify pathways important for growth and metabolism coordination.
Dynamics of gene expression during devepolement and expansion of vegetative stem internodes of bioenergy sorghum
Bioenergy sorghum accumulates 75% of shoot biomass in stem internodes. Grass stem internodes are formed during vegetative growth and elongate in response to developmental and environmental signals. To identify genes and molecular mechanisms that modulate the extent of internode growth, we conducted microscopic and transcriptomic analysis of four successive sub-apical vegetative internodes representing different stages of internode development of the bioenergy sorghum genotype R.07020.
Sorghum bicolor BTx623 Gene Atlas Plate 8
JGI Flagship Plant Gene Atlas, plant transcriptome and annotation
Sorghum bicolor BTx623 Gene Atlas Plate9
JGI Flagship Plant Gene Atlas, transcriptome & annotation