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At least 1,693 records · Page 94

Sci-Fri PM: Radiation Therapy, Planning, Imaging, and Special Techniques - 10: Results from Canada Wide Survey on Total Body Irradiation Practice

Purpose: Total Body Irradiation (TBI) is delivered to a relatively small number of patients with a variety of techniques; it has been a challenge to develop consensus studies for best practice. This survey was created to assess the current state of TBI in Canada. Methods: The survey was created with questions focusing on the radiation prescription, delivery technique and resources involved. The survey was circulated electronically to the heads of every clinical medical physics department in Canada. Responses were gathered and collated, and centres that were known to deliver TBI were urged to respond. Results: Responses from 20 centres were received, including 12 from centres that perform TBI. Although a variety of TBI dose prescriptions were reported, 12 Gy in 6 fractions was used in 11 centres while 5 centres use unique prescriptions. For dose rate, a range of 9 to 51 cGy/min was reported. Most centres use an extended SSD technique, with the patient standing or lying down against a wall. The rest use either a “sweeping” technique or a more complicated multi-field technique. All centres but one indicated that they shield the lungs, and only a minority shield other organs. The survey also showed that considerable resources are used for TBI including extra staffing, extended planning and treatment times and the use of locally developed hardware or software. Conclusions: This survey highlights that both similarities and important discrepancies exist between TBI techniques across the country, and is an opportunity to prompt more collaboration between centres.

60 APPLIED LIFE SCIENCES↗

Coherent diffraction imaging in the undergraduate laboratory

We present an undergraduate optics instructional laboratory designed to teach skills relevant to a broad range of modern scientific and technical careers. In this laboratory project, students image a custom aperture using coherent diffraction imaging, while learning principles and skills related to digital image processing and computational imaging, including multidimensional Fourier analysis, iterative phase retrieval, noise reduction, finite dynamic range, and sampling considerations. After briefly reviewing these imaging principles, we describe the required experimental materials and setup for this project. Our experimental apparatus is both inexpensive and portable, and a software application we developed for interactive data analysis is freely available.

Porter, J. Nicholas↗

Rotation of a 1-GeV particle beam by a fan system of thin crystals

The deflection of a 1-GeV charged particle beam by a system formed by fan-oriented thin silicon wafers has been studied theoretically and experimentally. Software has been developed for numerical simulation of a particle beam transmission through a fan crystal system. In the U-70 experiment on a proton beam, the particles were deflected by such a system through an angle exceeding 1 mrad. Thus, a new method has been demonstrated for rotating a particle beam, which can be used for creating accelerator beams for medical purposes.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Landscape Environmental Assessment Framework

LEAF Version 2.0 is a framework comprising of three models RUSLE2, WEPS, and AGNPS. The framework can predict row crop, crop residue, and energy crop yields at a sub-field resolutions for various combinations of soil, climate and crop management and residue harvesting practices. It estimates the loss of soil, carbon, and nutrients to the atmosphere, to the groundwater, and to runoff. It also models the overland flow of water and washed-off sediments, nutrients and other chemicals to provide estimates of sediment, nutrient, and chemical loadings to water bodies within a watershed. AGNPS model and wash-off calculations are the new additions to this version of LEAF. Development of LEAF software is supported by DOE's BETO program.

Nair, Shyam↗

Center for Efficient Exascale Discretizations Software Suite

The CEED Software suite is a collection of generally applicable software tools focusing on the following computational motives: PDE discretizations on unstructured meshes, high-order finite element and spectral element methods and unstructured adaptive mesh refinement. All of this software is being developed as part of CEED, a co-design Center for Efficient Exascale Discretizations, within DOE's Exascale Computing Project (ECP) program.

Kolev, Tzanio↗

Proactive Data Containers (PDC) v0.1

As extreme-scale era software, we are developing novel object- based data abstractions and storage mechanisms that take advantage of the deep storage hierarchy and enable proactive automated performance tuning. In order to achieve these goals, we have developed a fundamental new data abstraction, called Proactive Data Containers (PDC). A PDC is a container within a locus of storage (memory, NVRAM, disk, etc.) that stores science data in an object-oriented manner.

Byna, Suren↗

IBSL (Interface between source and load) [SWR-21-81]

Interfacing voltage source with a load and a current source with a sink are challenging. The model developed under this software is used to interface voltage source with a sink and a current source with the sink.

Prabakar, Kumaraguru↗

Load Disaggregation (Modeling Individual Appliance Power Generation & Consumption in Real-Time)

We developed a machine learning-based load disaggregation method to estimate the real-time output of individual appliances from the whole-house measurements. We first learn the important features associated with each type of appliances using the ground truth consumption data of individual appliances potentially available for a small set of houses equipped with submeters. The learned features are then be used to estimate the power generation/consumption of the appliances from the whole-house consumption. This developed load disaggregation software includes two steps. The first step is to identify the on/off status of different appliances using a classification method, and the second step is to estimate the appliance output using a regression method.

Hao, Jun↗

pnnl/FermionicSwap

The software allows rapid development of simulations using the fermionic swap method on Microsoft's Quantum Development Kit (QDK) framework. Gate, circuit, etc. costs can be estimated using Microsoft's resource estimator

Hagge, Tobias↗

Real Vector Framework

SAND2025-11463O The Real Vector Framework (RVF) is a modern and flexible C++ vector math library for developing scientific computing software that involves vector computations. RVF allows an opt-in approach to functionality that parallels the familiar base-class and override structures of object-oriented programming. Users can reuse and customize the code without inheritance entanglements and dynamic dispatch, while enabling seamless interoperability between diverse container types. Sandia National Laboratories is a multimission laboratory managed and operated by National Technology & Engineering Solutions of Sandia, LLC, a wholly owned subsidiary of Honeywell International Inc., for the U.S. Department of Energy’s National Nuclear Security Administration under contract DE-NA0003525.

von Winckel, Gregory [Sandia National Lab. (SNL-CA↗

POWER DATA ANOMALY DETECTION PACKAGE

SF-25-150 Software package for developing anomaly detection models for electric power operational data

PLATHOTTAM, SIBY JOSE [Argonne National Laboratory↗

Fluorescent amplification for next generation sequencing (FA-NGS) library preparation

BACKGROUND: Next generation sequencing (NGS) has become a universal practice in modern molecular biology. As the throughput of sequencing experiments increases, the preparation of conventional multiplexed libraries becomes more labor intensive. Conventional library preparation typically requires quality control (QC) testing for individual libraries such as amplification success evaluation and quantification, none of which occur until the end of the library preparation process. RESULTS: In this study, we address the need for a more streamlined high-throughput NGS workflow by tethering real-time quantitative PCR (qPCR) to conventional workflows to save time and implement single tube and single reagent QC. We modified two distinct library preparation workflows by replacing PCR and quantification with qPCR using SYBR Green I. qPCR enabled individual library quantification for pooling in a single tube without the need for additional reagents. Additionally, a melting curve analysis was implemented as an intermediate QC test to confirm successful amplification. Sequencing analysis showed comparable percent reads for each indexed library, demonstrating that pooling calculations based on qPCR allow for an even representation of sequencing reads. To aid the modified workflow, a software toolkit was developed and used to generate pooling instructions and analyze qPCR and melting curve data. CONCLUSIONS: We successfully applied fluorescent amplification for next generation sequencing (FA-NGS) library preparation to both plasmids and bacterial genomes. As a result of using qPCR for quantification and proceeding directly to library pooling, the modified library preparation workflow has fewer overall steps. Therefore, we speculate that the FA-NGS workflow has less risk of user error. The melting curve analysis provides the necessary QC test to identify and troubleshoot library failures prior to sequencing. While this study demonstrates the value of FA-NGS for plasmid or gDNA libraries, we speculate that its versatility could lead to successful application across other library types.

59 BASIC BIOLOGICAL SCIENCES↗

Diffraction properties of cylindrically bent KAP crystals in energy range of 2.3–7.5 keV using synchrotron radiation

Verification of physics models and computer simulations are heavily reliant upon the accuracy of experimental measurements. Calibration of instrument responses becomes an important step to achieve this goal. This paper presents systematic studies of bent potassium acid phthalate (KAP) crystals using Lawrence Berkeley National Laboratories, Advanced Light Source, beamline 9.3.1 in the energy range of 2.3 to 7.5 keV. A set of KAP crystals, gradually bent from flat up to a 50.8 mm cylindrical curvature. The measured integrated reflectivity for this set of KAP crystals shows good agreement with the X-ray Oriented Program (XOP) calculations when adjusting the Debye–Waller temperature factor and using the multilamellar model in the calculations. Significant differences in rocking curve profiles were observed between experimental measurements and theory. A forward convolution model and software code were developed to include experimental parameters, allowing the investigation of the difference between measurements and calculations. After considering the experimental parameters, good agreements were obtained for the rocking curve profiles for all bending radii with a unique set of parameters. Our results show that XOP can be a useful and reliable tool to predict performance of cylindrically bent KAP crystals in this energy range.

Wu, Ming↗

Deep learning for accelerated all-dielectric metasurface design

Deep learning has risen to the forefront of many fields in recent years, overcoming challenges previously considered intractable with conventional means. Materials discovery and optimization is one such field, but significant challenges remain, including the requirement of large labeled datasets and one-to-many mapping that arises in solving the inverse problem. Here we demonstrate modeling of complex all-dielectric metasurface systems with deep neural networks, using both the metasurface geometry and knowledge of the underlying physics as inputs. Our deep learning network is highly accurate, achieving an average mean square error of only 1.16 × 10 -3 and is over five orders of magnitude faster than conventional electromagnetic simulation software. We further develop a novel method to solve the inverse modeling problem, termed fast forward dictionary search (FFDS), which offers tremendous controls to the designer and only requires an accurate forward neural network model. These techniques significantly increase the viability of more complex all-dielectric metasurface designs and provide opportunities for the future of tailored light matter interactions.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Cabana: A Performance Portable Library for Particle-Based Simulations

Particle-based simulations are ubiquitous throughout many fields of computational science and engineering, spanning the atomistic level with molecular dynamics (MD), to mesoscale particle-in-cell (PIC) simulations for solid mechanics, device-scale modeling with PIC methods for plasma physics, and massive N-body cosmology simulations of galaxy structures, with many other methods in between (Hockney & Eastwood, 1989). While these methods use particles to represent significantly different entities with completely different physical models, many low-level details are shared including performant algorithms for short- and/or long-range particle interactions, multi-node particle communication patterns, and other data management tasks such as particle sorting and neighbor list construction. Cabana is a performance portable library for particle-based simulations, developed as part of the Co-Design Center for Particle Applications (CoPA) within the Exascale Computing Project (ECP) (Alexander et al., 2020). The CoPA project and its full development scope, including ECP partner applications, algorithm development, and similar software libraries for quantum MD, is described in (Mniszewski et al., 2021). Cabana uses the Kokkos library for on-node parallelism (Edwards et al., 2014; Trott et al., 2022), enabling simulation on multi-core CPU and GPU architectures, and MPI for GPU-aware, multi-node communication. Cabana provides particle simulation capabilities on almost all current Kokkos backends, including serial execution, OpenMP (including OpenMP-Target for GPUs), CUDA (NVIDIA GPUs), HIP (AMD GPUs), and SYCL (Intel GPUs), providing a clear path for the coming generation of accelerator-based exascale hardware. Cabana builds on Kokkos by providing new particle data structures and particle algorithms resulting in a similar execution policy-based, node-level programming model that is intended to be used in addition to the core Kokkos library within an application. Cabana is designed as an application and physics agnostic, but particle-specific toolkit which can either be used to generate a new application, or to be used as needed in existing applications at various levels of invasiveness including through interfaces that wrap user memory in existing data structures.

97 MATHEMATICS AND COMPUTING↗

ERF: Energy Research and Forecasting

The Energy Research and Forecasting (ERF) code is a new model that simulates the mesoscale and microscale dynamics of the atmosphere using the latest high-performance computing architectures. It employs hierarchical parallelism using an MPI+X model, where X may be OpenMP on multicore CPU-only systems, or CUDA, HIP, or SYCL on GPU-accelerated systems. ERF is built on AMReX (Zhang et al., 2019, 2021), a block-structured adaptive mesh refinement (AMR) software framework that provides the underlying performance-portable software infrastructure for block-structured mesh operations. The "energy" aspect of ERF indicates that the software has been developed with renewable energy applications in mind. In addition to being a numerical weather prediction model, ERF is designed to provide a flexible computational framework for the exploration and investigation of different physics parameterizations and numerical strategies, and to characterize the flow field that impacts the ability of wind turbines to extract wind energy. The ERF development is part of a broader effort led by the US Department of Energy's Wind Energy Technologies Office.

17 WIND ENERGY↗

Collaborative Research: Regional climate-change projections through next-generation empirical and dynamical models (Final Technical Report)

This is the final report for a DOE-funded research project describing the outcome of research on non-homogeneous hidden Markov models (NHMMs) and coupled ocean-atmosphere (O-A) intermediate-complexity models (ICMs) to identify the potentially predictable modes of climate variability, and to investigate their impacts on the regional-scale. The main results consist of extensive development of the hidden Markov models for rainfall simulation and downscaling specifically within the non-stationary climate change context together with the development of parallelized software; application of NHMMs to downscaling of rainfall projections over India; identification and analysis of decadal climate signals in data and models; and, studies of climate variability in terms of the dynamics of atmospheric flow regimes.

58 GEOSCIENCES↗

Experimental High Energy Physics Brandeis University Final Report

During the past three years, the Brandeis experimental particle physics group was comprised of four faculty (Bensinger, Blocker, Sciolla, and Wellenstein), one research scientist, one post doc, and ten graduate students. The group focused on the ATLAS experiment at LHC. In 2011, the LHC delivered 5/fb -1 of pp colliding beam data at a center-of-mass energy of 7 TeV. In 2012, the center-of-mass energy was increased to 8 TeV, and 20/fb -1 were delivered. The Brandeis group focused on two aspects of the ATLAS experiment $-$ the muon detection system and physics analysis. Since data taking began at the LHC in 2009, our group actively worked on ATLAS physics analysis, with an emphasis on exploiting the new energy regime of the LHC to search for indications of physics beyond the Standard Model. The topics investigated were Z' → ll, Higgs → ZZ* -. 4l, lepton flavor violation, muon compositeness, left-right symmetric theories, and a search for Higgs → ee. The Brandeis group has for many years been a leader in the endcap muon system, making important contributions to every aspect of its design and production. During the past three years, the group continued to work on commissioning the muon detector and alignment system, development of alignment software, and installation of remaining chambers.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗